Mapping genomic library clones using oligonucleotide arrays

Genomics

Volumn 33, Issue 3, 1996, Pages 445-456

  Sapolsky, Ronald J ^a   Lipshutz, Robert J ^a  

^a Thermo Fisher Scientific   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

DNA; OLIGONUCLEOTIDE;

ARTICLE; DNA PROBE; GENE LIBRARY; GENE MAPPING; GENETIC MARKER; MOLECULAR CLONING; NONHUMAN; PRIORITY JOURNAL; TECHNIQUE;

EID: 0030008842     PISSN: 08887543     EISSN: None     Source Type: Journal    
DOI: 10.1006/geno.1996.0219     Document Type: Article

References (28)

1. Alizadeh, F., Karp, R. M., Newberg, L. A., and Weisser, D. K. (1992). "Physical Mapping of Chromosomes: A Combinatorial Problem in Molecular Biology," International Computer Science Institute Report, Berkeley, CA.
2. Barillot, E., Dausset, J., and Cohen, D. (1991). Theoretical analysis of a physical mapping strategy using random single-copy landmarks. Proc. Natl. Acad. Sci. USA 88(9): 3917-3921.
3. Brenner, S., and Livak, K. J. (1989). DNA fingerprinting by sampled sequencing. Proc. Natl. Acad. Sci. USA 86(22): 8902-8906.
4. Carrano, A. V., et al. (1989). A high-resolution, fluorescence-based, semiautomated method for DNA fingerprinting. Genomics 4(2): 129-136.
5. Coulson, A., Sulston, J., Brenner, S., and Karn, J. (1986). Towards a physical map of the genome of the nematode Caenorhabditis elegans. Proc. Natl. Acad. Sci. USA 83: 7821-7825.
6. Craig, A. G., Nizetic, D., Hoheisel, J. D., Zehetner, G., and Lehrach, H. (1990). Ordering of cosmid clones covering the Herpes simplex virus type I (HSV-I) genome: A test case for fingerprinting by hybridisation. Nucleic Acids Res. 18(9): 2653-2660.
7. Cuticchia, A. J., Arnold, J., and Timberlake, W. E. (1992a). The use of simulated annealing in chromosome reconstruction experiments based on binary scoring. Genetics 132: 591-601.
8. Cuticchia, A. J., Ivarie, R., and Arnold, J. (1992b). The application of Markov chain analysis to oligonucleotide frequency prediction and physical mapping of Drosophila melanogaster. Nucleic Acids Res. 20(14): 3651-3657.
9. Evans, G. A., and Lewis, K. A. (1989). Physical mapping of complex genomes by cosmid multiplex analysis. Proc. Natl. Acad. Sci. USA 86(13): 5030-5034.
10. Fodor, S. P., Read, J. L., Pirrung, M. C., Stryer, L., Lu, A. T., and Solas, D. (1991). Light-directed, spatially addressable parallel chemical synthesis. Science 251(4995): 767-773.
11. Fodor, S. P., Rava, R. P., Huang, X. C., Pease, A. C., Holmes, C. P., and Adams, C. L. (1993). Multiplexed biochemical assays with biological chips. Nature 364: 555-556.
12. Fu, Y. X., Timberlake, W. E., and Arnold, J. (1992). On the design of genome mapping experiments using short synthetic oligonucleotides. Biometrics 48(2): 337-359.
13. Green, E. D., and Olson, M. V. (1990a). Chromosomal region of the cystic fibrosis gene in yeast artificial chromosomes: A model for human genome mapping. Science 250: 94-98.
14. Green, E. D., and Olson, M. V. (1990b). Systematic screening of yeast artificial-chromosome libraries by use of the polymerase chain reaction. Proc. Natl. Acad. Sci. USA 87(3): 1213-1217.
15. Green, E. D., Mohr, R. M., Idol, J. R., Jones, M., Buckingham, J. M., Deaven, L. L., Moyzis, R. K., and Olson, M. V. (1991). Systematic generation of sequence-tagged sites for physical mapping of human chromosomes: Application to the mapping of human chromosome 7 using yeast artificial chromosomes. Genomics 11(3): 548-564.
16. Imai, T., and Olson, M. V. (1990). Second-generation approach to the construction of yeast artificial-chromosome libraries. Genomics 8(2): 297-303.
17. Lander, E. S., and Waterman, M. S. (1988). Genomic mapping by fingerprinting random clones: A mathematical analysis. Genomics 2(3): 231-239.
18. Lipshutz, R., and Fodor, S. P. A. (1994). Advanced DNA sequencing technologies. Curr. Opin. Struct. Biol. 4: 376-380.
19. Lipshutz, R. J., Morris, D., Chee, M., Hubbell, E., Kozal, M. J., Shah, N., Shen, N., Yang, R., and Fodor, S. P. A. (1995). Using oligonucleotide probe arrays to access genetic diversity. BioTechniques 19: 442-447.
20. Olson, M. V., Dutchik, J. E., Graham, M. Y., Brodeur, G. M., Helms, C., Frank, M., MacCollin, M., Scheinman, R., and Frank, T. (1986). Random-clone strategy for genomic restriction mapping in yeast. Proc. Natl. Acad. Sci. USA 83: 7826-7830.
21. Olson, M., Hood, L., Cantor, C., and Botstein, D. (1989). A common language for physical mapping of the human genome. Science 245(4925): 1434-1435.
22. Pease, A. C., Solas, D., Sullivan, E. J., Cronin, M. T., Holmes, C. P., and Fodor, S. P. (1994). Light-generated oligonucleotide arrays for rapid DNA sequence analysis. Proc. Natl. Acad. Sci. USA 91: 5022-5026.
23. Poustka, A., Pohl, T. M., Barlow, D. P., Zehetner, G., Craig, A. G., Michiels, F., Ehrich, E., Frischauf, A. M., and Lehrach, H. (1986). Molecular approaches to mammalian genetics. Cold Spring Harbor Symp. Quant. Biol. 51: 131-139.
24. Riles, L., et al. (1993). Physical maps of six smallest yeast chromosomes. Genetics 134: 81-150.
25. Stallings, R. L., Torney, D. C., Hildebrand, C. E., Longmire, J. L., Deaven, L. L., Jett, J. H., Doggett, N. A., and Moyzis, R. K. (1990). Physical mapping of human chromosomes by repetitive sequence fingerprinting. Proc. Natl. Acad. Sci. USA 87(16): 6218-6222.
26. n repetitive sequences in mammalian genomes. Genomics 10(3): 807-815.
27. Unrau, P., and Deugau, K. V. (1994). Non-cloning amplification of specific DNA fragments from whole genomic DNA digests using DNA 'indexers'. Gene 145: 163-169.
28. Vollrath, D., Foote, S., Hilton, A., Brown, L. G., Beer-Romero, P., Bogan, J. S., and Page, D. C. (1992). The human Y chromosome: A 43-interval map based on naturally occurring deletions. Science 258: 52-59.