Similarities in restriction fragment patterns of mitochondrial DNAs of Phytophthora species strongly depend on the restriction enzyme used due to heterogeneous base distribution and sequence conservation

Fungal Genetics and Biology

Volumn 20, Issue 1, 1996, Pages 36-42

  De Cock, Arthur W A M ^a   Karlovsky, Petr ^b   Jahnke, Klaus Dieter ^c   Bahnweg, Günther ^d  

^a Yeast Division   (Netherlands)

^b UNIVERSITY OF HOHENHEIM   (Germany)

^c LEIBNIZ INSTITUTE DSMZ GERMAN COLLECTION OF MICROORGANISMS AND CELL CULTURES   (Germany)

^d Inst Biochemische P   (Germany)

Author keywords

Base distribution; Mitochondrial DNA; Phytophthora; Restriction enzyme; RFLP; Sequence conservation

Indexed keywords

PHYTOPHTHORA;

MITOCHONDRIAL DNA; RESTRICTION ENDONUCLEASE;

ARTICLE; CONTROLLED STUDY; DNA SEQUENCE; NONHUMAN; OOMYCETES; PRIORITY JOURNAL; RESTRICTION FRAGMENT LENGTH POLYMORPHISM; TAXONOMY;

EID: 0030008568     PISSN: 10871845     EISSN: None     Source Type: Journal    
DOI: 10.1006/fgbi.1996.0007     Document Type: Article

References (30)

1. Bates, M. R., Buck, K. W., and Brasier, C. M. 1993. Molecular relationships of the mitochondrial DNA of Ophiostoma ulmi and the NAN and EAN races of O. novo-ulmi determined by restriction fragment length polymorphisms. Mycol. Res. 97: 1093-1100.
2. Carter, D. A., Archer, S. A., Buck, K. W., Shaw, D. S., and Shattock, R. C. 1990. Restriction fragment length polymorphisms of mitochondrial DNA of Phytophthora infestans. Mycol. Res. 94: 1123-1128.
3. De Cock, A. W. A. M. 1992. Molecular taxonomy of Phytophthora and related genera (Oomycetes) (Abstract). Belg. J. Bot. 125: 240.
4. De Cock, A. W. A. M., Neuvel, A., Bahnweg, G., De Cock, J. C. J. M., and Prell, H. H. 1992. A comparison of morphology, pathogenicity and restriction fragment patterns of mitochondrial DNA among isolates of Phytophthora porri Foister. Neth. J. Plant Pathol. 98: 277-289.
5. Deley, J., Cattoir, H., and Reynaerts, A. 1970. The quantitative measurement of DNA hybridization from renaturation rates. Eur. J. Biochem. 12: 133-142.
6. Förster, H., and Coffey, M. D. 1993. Molecular taxonomy of Phytophthora megasperma based on mitochondrial and nuclear DNA polymorphisms. Mycol. Res. 97: 1101-1112.
7. Förster, H., Kinscherf, T. G., Leong, S. A., and Maxwell, D. P. 1987. Molecular analysis of the mitochondrial genome of Phytophthora. Curr. Genet. 12: 215-218.
8. Förster, H., Kinscherf, T. G., Leong, S. A., and Maxwell, D. P. 1988. Estimation of relatedness between Phytophthora species by analysis of mitochondrial DNA. Mycologia 80: 466-478.
9. Förster, H., Kinscherf, T. G., Leong, S. A., and Maxwell, D. P. 1989. Restriction fragment length polymorphisms of the mitochondrial DNA of Phytophthora megasperma, isolated from soybean, alfalfa, and fruit trees. Can. J. Bot. 67: 529-537.
10. Förster, H., Oudemans, P., and Coffey, M. D. 1990. Mitochondrial and nuclear DNA diversity within six species of Phytophthora. Exp. Mycol. 14: 18-31.
11. Fukuda, M., Nakai, Y. F., Hibbett, D. S., Matsumoto, T., and Hayashi, Y. 1994. Mitochondrial DNA restriction fragment length polymorphisms in natural populations of Lentinula edodes. Mycol. Res. 98: 169-175.
12. Gillis, M., DeLey, J., and De Cleene, M. 1970. The determination of molecular weight of bacterial genome DNA from renaturation rates. Eur. J. Biochem. 12: 143-153.
13. Guillamón, J. M., Barrio, E., Huerta, T., and Querol, A. 1994. Rapid characterization of four species of the Saccharomyces sensu stricto complex according to mitochondrial DNA patterns. Int. J. Syst. Bacteriol. 44: 708-714.
14. Hwang, B. K., De Cock, A. W. A. M., Bahnweg, G., Prell, H. H., and Heitefuss, R. 1991. Restriction fragment length polymorphisms of mitochondrial DNA among Phytophthora capsici isolates form pepper (Capsicum annuum). Syst. Appl. Microbiol. 14: 111-116.
15. Josse, J., Kaiser, A., and Kornberg, J. 1961. Enzymatic synthesis of deoxyribonucleic acid. J. Biol. Chem. 236: 864-875.
16. Karlovsky, P., and De Cock, A. W. A. M. 1991. Buoyant density of DNA-Hoechst 33258 (bisbenzimide) complexes in CsCl gradients: Hoechst 33258 binds to single AT base pairs. Anal. Biochem. 194: 192-197.
17. Karlovsky, P., and Fartmann, B. 1992. Genetic code and phylogenetic origin of oomycetous mitochondria. J. Mol. Evol. 34: 254-258.
18. Klimczak, L. J., and Prell, H. H. 1984. Isolation and characterization of mitochondrial DNA of the oomycetous fungus Phytophthora infestons. Curr. Genet. 8: 323-326.
19. Lacourt, I., Panabieres, F., Marias, A., Vennard, P., and Ricci, P. 1994. Intraspecific polymorphism of Phytophthora parasitica revealed by analysis of mitochondrial DNA restriction fragment length polymorphism. Mycol Res. 98: 562-568.
20. Mesbah, M., Premachandran, U., and Whitman, W. B. 1989. Precise measurement of the G+C content of deoxyribonucleic acid by high-performance liquid chromatography. Int. J. Syst. Bacteriol. 39: 159-167.
21. Möller, E. M., De Cock, A. W. A. M., and Prell, H. H. 1993. Mitochondrial and nuclear DNA restriction enzyme analysis of the closely related Phytophthora species, P. infestans, P. mirabilis, and P. phaseoli. J. Phytopathol. 139: 309-321.
22. Nussinov, R. 1981. Nearest neighbour nucleotide patterns: Structural and biological implications. J. Biol. Chem. 256: 8458-8462.
23. Prunell, A., and Bernardi, G. 1974. The mitochondrial genome of wild-type yeast cells IV. Genes and spacers. J. Mol. Biol. 86: 825-841.
24. Sambrook, J., Fritsch, E. F., and Maniatis, T. 1989. Molecular Cloning. A Laboratory Manual. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.
25. Sanger, F., Coulson, A. R., Hong, G. F., Hill, D. F., and Petersen, G. B. 1982. Nucleotide sequence of bacteriophage lambda DNA. J. Mol. Biol 162: 729-773.
26. Stamps, D. J., Waterhouse, G. M., Newhook, F. J., and Hall, G. S. 1990. Revised tabular key to the species of Phytophthora. Mycol. Pap. 162: 28.
27. Tamaoka, J., and Komagata, K. 1984. Determination of DNA base composition by reverse-phase high-performance liquid chromatography. FEMS Microbiol. Lett. 25: 125-128.
28. Terpstra, P., Holtrop, M., and Kroon, A. 1977. Heterogeneous base distribution in mitochondrial DNA of Neurospora crassa. Nucleic Acids Res. 4: 129-139.
29. Varga, J., Kevei, F., Vriesema, A., Debets, F., Kozakiewicz, Z., and Croft, J. H. 1994. Mitochondrial DNA restriction fragment length polymorphisms in field isolates of the Aspergillus niger aggregate. Can. J. Microbiol. 40: 612-621.
30. Waterhouse, G. M. 1963. Key to the species of Phytophthora de Bary. Mycol. Pap. 92: 22.