Subtelomeric duplications in Saccharomyces cerevisiae chromosomes III and XI: Topology, arrangements, corrections of sequence and strain-specific polymorphism

Yeast

Volumn 12, Issue 6, 1996, Pages 583-591

  Gromadka, R ^a   Gora, M ^a   Zielenkiewicz, U ^a   Slonimski, P P ^b   Rytka, J ^a  

^a INSTITUTE OF BIOCHEMISTRY AND BIOPHYSICS   (Poland)

^b CNRS   (France)

Author keywords

chromosome III; chromosome XI; duplicatrion; Saccharomyces cerevisiae; sequence; translocation

Indexed keywords

ANIMAL EXPERIMENT; ARTICLE; CHROMOSOME 3; CHROMOSOME 9; CONTROLLED STUDY; DNA SEQUENCE; GENE TRANSLOCATION; GENETIC POLYMORPHISM; NONHUMAN; OPEN READING FRAME; PRIORITY JOURNAL; SACCHAROMYCES CEREVISIAE; STRAIN DIFFERENCE;

AMINO ACID SEQUENCE; HYBRIDIZATION, GENETIC; MEMBRANE PROTEINS; MOLECULAR SEQUENCE DATA; POLYMORPHISM, GENETIC; READING FRAMES; RESTRICTION MAPPING; SACCHAROMYCES CEREVISIAE; SEQUENCE HOMOLOGY, AMINO ACID;

ANIMALIA; SACCHAROMYCES CEREVISIAE; SACCHAROMYCES DOUGLASII;

EID: 0030005459     PISSN: 0749503X     EISSN: None     Source Type: Journal    
DOI: 10.1002/(SICI)1097-0061(199605)12:6<583::AID-YEA936>3.0.CO;2-Y     Document Type: Article

References (42)

1. Adams, J., Puskas-Rozsa, S., Simlar, J. and Wilke, C. M. (1992). Adaptation and major chromosomal changes in population of Saccharomyces cerevisiae. Curr. Genet. 22, 13-19.
2. Adjiri, A., Chanet, R., Mezard, C. and Fabre, F. (1994). Sequence comparison of the ARG4 chromosomal regions from the two related yeasts, Saccharomyces cerevisiae and Saccharomvces douglasii. Yeast 10, 309-317.
3. Alexandraki, D. and Tzermia, M. (1994). Sequencing of a 13·2 kb segment next to the left telomere of yeast chromosome XI revealed five open reading frames and recent recombination events with the right arms of chromosomes III and V. Yeast 10, 581-591.
4. Balzi, E. and Goffeau, A. (1994). Genetics and biochemistry of yeast multidrug resistance. Biochim. Biophys. Acta 1187, 152-162.
5. Biliński, T., Litwinska, J., Sledziewski, A. and Rytka, J. (1980). Hemoprotein formation in yeast. VII. Genetic analysis of pleiotropic mutants affected in the response to glucose repression and anoxia. Acta Microbiol. Pol. 29, 199-212.
6. Charron, M. J., Read, E., Haut, S. R. and Michels, C. A. (1989). Molecular evolution of the telomere associated MAL loci of Saccharomyces. Genetics 122, 307-331.
7. Conde, J. and Fink, G. R. (1976). A mutant of S. cerevisiae defective for nuclear fusion. Proc. Natl. Acad. Sci. USA 73, 3651-3655.
8. Corcoran, L M., Thompson, J. K., Walliker, D. and Kemp, D. J. (1988). Homologous recombination within subtelomeric repeat sequences generates chromosome size polymorphism in P. falciparum. Cell 53, 807-813.
9. Dujon, B., et al. (1994). Complete DNA sequence of yeast chromosome XI. Nature 369, 371-378.
10. Feldman, H., et al. (1994). Complete DNA sequence of yeast chromosome II. EMBO J. 13, 5795-5809.
11. Feuermann, M., Braun, V., de Montigny, J., Jeanmougin, F., Potire, S. and Souciet, J.-L. (1995). Organization of the yeast chromosomes: Systematic sequencing reveals the presence of long stretches of identical sequences on chromosome I and chromosome VII. Yeast 11 (Spec. Iss.), S628.
12. Fogel, S. and Welch, J. (1982). Tandem gene amplification mediates copper resistance in yeast. Proc. Natl. Acad. Sci. USA 79, 5342-5346.
13. Gerring, S. L., Conelly, C. and Hieter, P. (1991). Positional mapping of genes by chromosome blotting and chromosome fragmentation. Methods Enzymol. 194, 57-77.
14. Goffeau, A., Nakai, K., Slonimski, P. P. and Risler, J.-L. (1993). The membrane proteins encoded by yeast chromosome III genes. FEBS Lett. 325, 112-117.
15. Gottschiling, D. E., Aparacio, O. M., Billington, B L. and Zakian, V. A. (1990). Position affect at S. cerevisiae telomeres: reversible repression of Pol II transcription. Cell 63, 751-762.
16. Groudinsky, O., Dujardin, G. and Slonimski, P P. (1981). Long range control circuits within mitochondria and between nucleus and mitochondria. II. Genetic and biochemical analyses of suppressors which selectively alleviate the mitochondrial intron mutations. Mol Gen. Genet. 184, 493-503.
17. Herbert, C. J., Dujardin, G., Labousse, M. and Slonimski, P. P. (1988). Divergence of the mitochondrial leucyl tRNA synthetase genes in two closely related yeast Saccharomyces cerevisiae and Saccharomyces douglasii: a paradigm of incipient evolution. Mol. Gen. Genet. 213, 297-309.
18. Herbert, C. J., Macadre, C., Becam, A. M., Lazowska, J. and Slonimski, P. P. (1992). The MRS1 gene of S. douglasii: co-evolution of mitochondrial introns and specific splicing proteins encoded by nuclear genes. Gene Expr. 2, 203-214.
19. Kanazawa, S., Driscoll, M. and Struhl, K. (1988). ATR1, a Saccharomyces cerevisiae gene encoding a trans membrane protein required for aminotriazole resistance. Mol. Cell. Biol. 8, 664-673.
20. Krawiec, S. and Riley, M. (1990). Organization of the bacterial chromosome. Microbiol. Rev. 54, 502-539.
21. Kyte, J. and Doolittle, R. F. (1982). A simple method for displaying the hydropathic character of a protein. J. Mol. Biol. 157, 105-132.
22. Lalo, D., Stettler, S., Mariotte, S. and Slonimski, P. P. (1993). Two yeast chromosomes are related by fossil duplication of their centromeric region. C. R. Acad. Sci. Paris, Science de la vie/Life Sciences 316, 367-373.
23. Link, A. J. and Olson, M. V. (1991). Physical map of the Saccharomyces cerevisiae genome at 110-kilobase resolution. Genetics 127, 681-698.
24. Louis, E. J. and Haber, J. E. (1990). Mitotic recombination among subtelomeric Y' repeats in Saccharomyces cerevisiae. Genetics 124, 547-559.
25. Marger, M. D. and Saier, M. H. (1993). A major superfamily of transmembrane facilitators that catalyse uniport, symport and antiport. TIBS 18, 13-20.
26. Melnick, L. and Sherman, F. (1993). The gene clusters ARC and COR on chromosome 5 and 10, respectively, of Saccharomyces cerevisiae share a common ancestry. J. Mol. Biol. 233, 372-388.
27. Michels, C. A., Read, E., Nat, K. and Charron, M. J. (1992). The telomere-associated MAL3 locus of Saccharomyces cerevisiae is a tandem array of repeated genes. Yeast 8, 655-665.
28. Naumov, G., Naumov, E. S., Lantto, R. A., Louis, E. J. and Korhola, M. (1992). Genetic homology between Saccharomyces cerevisiae and its sibling species S. paradoxus and S. bayanus: electrophoretic karyotypes. Yeast 8, 599-612.
29. Oliver, S. G., et al. (1992). The complete DNA sequence of yeast chromosome III. Nature 357, 38-46.
30. Perler, F., Efstratiadis, A., Lomedico, P., Gilbert, W., Kolodner, R. and Dodgson, J. (1980). The evolution of genes: the chicken preproinsulin gene. Cell 20, 555-556.
31. Paquin, C. E., Dorsey, M., Crable, S., Sprinkel, K., Sondej, M. and Williamson, V. M. (1992). A spontaneous chromosomal amplification of the ADH2 gene in Saccharomyces cerevisiae. Genetics 130, 263-271.
32. Sambrook, J., Fritsch, E. F. and Maniatis, T. (1989). Molecular Cloning: A Laboratory Manual, 2nd edn. Cold Spring Harbor Press, Cold Spring Harbor, New York.
33. Schmitt, M. E., Brown, T. A. and Trumpower, B. L. (1990). A rapid and simple method for preparation of RNA from Saccharomyces cerevisiae. Nucl. Acids Res. 18, 3091-3092.
34. Sherman, F., Fink, G. R. and Hicks, J. B. (1986). Laboratory Course Manual for Methods in Yeast Genetics. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, New York.
35. Slonimski, P. P. and Brouillet, S. (1993). A data-base of chromosome III of Saccharomyces cerevisiae. Yeast 9, 941-1029.
36. Sonti, R. V. and Roth, J. R. (1989). Role of gene duplications in the adaptation of Salmonella typhimurium to growth on limiting carbon sources. Genetics 123, 19-28.
37. Stark, G. R. (1993). Regulation and mechanisms of mammalian gene amplification. Adv. Cancer Res. 61, 87-113.
38. de Steensma, H. Y., de Jonge, P., Kaptein, A. and Kaback, D. B. (1989). Molecular cloning of chromosome I DNA from Saccharomyces cerevisiae: localization of a repeated sequence containing an acid phosphatase gene near a telomere of chromosome I and chromosome VIII. Curr. Genet. 16, 131-137.
39. Thrash-Bingham, C. and Gorman, J. A. (1992). DNA translocations contribute to chromosome length polymorphisms in Candida albicans. Curr. Genet. 22, 93-100.
40. Voytas, D. F. and Boeke, J. D. (1992). Yeast retrotransposon revealed. Nature 358, 717.
41. Wintersberger, E. (1994). DNA amplification: New insights into its mechanism. Chromosoma 103, 73-81.
42. Yoshikawa. A. and Isono, K. (1990). Chromosome III of Saccharomyces cerevisiae: An ordered clone bank, a detailed restriction map and analysis of transcripts suggest the presence of 160 genes. Yeast 6, 388-401.