메뉴 건너뛰기




Volumn 70, Issue 6, 1996, Pages 2857-2866

Crystal structure of the B-DNA hexamer d(CTCGAG): Model for an A-to-B transition

Author keywords

[No Author keywords available]

Indexed keywords

DNA; OLIGONUCLEOTIDE;

EID: 0030004184     PISSN: 00063495     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0006-3495(96)79855-7     Document Type: Article
Times cited : (23)

References (32)
  • 2
    • 0025648066 scopus 로고
    • Local variability and base sequence effects in DNA crystal structures
    • Bhattacharyya, D., and M. Bansal. 1990. Local variability and base sequence effects in DNA crystal structures. J. Biomol. Struct. Dyn. 8:539-572.
    • (1990) J. Biomol. Struct. Dyn. , vol.8 , pp. 539-572
    • Bhattacharyya, D.1    Bansal, M.2
  • 5
    • 0028402160 scopus 로고
    • Side by side binding of two distamycin A drugs in the minor groove of an alternating B-DNA duplex
    • Chen, X., B. Ramakrishnan, S. T. Rao, and M. Sundaralingam. 1994. Side by side binding of two distamycin A drugs in the minor groove of an alternating B-DNA duplex. Nature Struct. Biol. 1:169-174.
    • (1994) Nature Struct. Biol. , vol.1 , pp. 169-174
    • Chen, X.1    Ramakrishnan, B.2    Rao, S.T.3    Sundaralingam, M.4
  • 6
    • 0029375390 scopus 로고
    • Crystal structures of the B-form DNA-RNA chimers complexed with distamycin
    • Chen, X., B. Ramakrishnan. and M. Sundaralingam. 1995. Crystal structures of the B-form DNA-RNA chimers complexed with distamycin. Nature Struct. Biol. 2:2-4.
    • (1995) Nature Struct. Biol. , vol.2 , pp. 2-4
    • Chen, X.1    Ramakrishnan, B.2    Sundaralingam, M.3
  • 7
    • 0023054147 scopus 로고
    • Chiral phosphorothioate analogues of B-DNA. The crystal structure of Rp-d[Gp(S)CpGp(S)CpGp(S)C]
    • Cruse, W. B. T., S. A. Salisbury, T. Brown, R. Cosstick, F. Eckstein, and O. Kennard. 1986. Chiral phosphorothioate analogues of B-DNA. The crystal structure of Rp-d[Gp(S)CpGp(S)CpGp(S)C]. J. Mol. Biol. 192: 891-905.
    • (1986) J. Mol. Biol. , vol.192 , pp. 891-905
    • Cruse, W.B.T.1    Salisbury, S.A.2    Brown, T.3    Cosstick, R.4    Eckstein, F.5    Kennard, O.6
  • 9
    • 0028931291 scopus 로고
    • Crystal structure of C-T-C-T-C-G-A-G-A-G. Implications for the structure of the Holliday junction
    • Goodsell, D. S., K. Grzeskowiak, and R. E. Dickerson. 1995. Crystal structure of C-T-C-T-C-G-A-G-A-G. Implications for the structure of the Holliday junction. Biochemistry. 34:1022-1029.
    • (1995) Biochemistry , vol.34 , pp. 1022-1029
    • Goodsell, D.S.1    Grzeskowiak, K.2    Dickerson, R.E.3
  • 12
    • 0027483012 scopus 로고
    • Co-crytal structure of TBP recognizing the minor groove of a TATA element
    • Kim, L. J., D. B. Nikolov, and S. K. Burley. 1993. Co-crytal structure of TBP recognizing the minor groove of a TATA element. Nature. 365: 520-527.
    • (1993) Nature , vol.365 , pp. 520-527
    • Kim, L.J.1    Nikolov, D.B.2    Burley, S.K.3
  • 13
    • 0027504913 scopus 로고
    • Crystal structure of a yeast TBP/TATA-box complex
    • Kim, Y., J. H. Geiger, S. Hahn, and P. B. Sigler. 1993. Crystal structure of a yeast TBP/TATA-box complex. Nature. 365:512-520.
    • (1993) Nature , vol.365 , pp. 512-520
    • Kim, Y.1    Geiger, J.H.2    Hahn, S.3    Sigler, P.B.4
  • 14
    • 0020692923 scopus 로고
    • Ordered water structure around a B-DNA dodecamer. A quantitative study
    • Kopka, M. L., A. V. Fratini, H. R. Drew, and R. E. Dickerson. 1983. Ordered water structure around a B-DNA dodecamer. A quantitative study. J. Mol. Biol. 163:129-146.
    • (1983) J. Mol. Biol. , vol.163 , pp. 129-146
    • Kopka, M.L.1    Fratini, A.V.2    Drew, H.R.3    Dickerson, R.E.4
  • 16
    • 0024058085 scopus 로고
    • The definition of generalized helicoidal parameters and of axis curvature for irregular nucleic acids
    • Lavery, R., and H. Sklenar. 1988. The definition of generalized helicoidal parameters and of axis curvature for irregular nucleic acids. J. Biomol. Struct. Dyn. 6:63-91.
    • (1988) J. Biomol. Struct. Dyn. , vol.6 , pp. 63-91
    • Lavery, R.1    Sklenar, H.2
  • 17
    • 0028209595 scopus 로고
    • Diversity of water ring size at DNA interfaces: Hydration and dynamics of DNA-anthracycline complexes
    • Lipscomb, L. A., M. E. Peek, F. X. Zhou, J. A. Bertrand, D. Vanderveer, and L. D. Williams. 1994. Diversity of water ring size at DNA interfaces: hydration and dynamics of DNA-anthracycline complexes. Biochemistry. 33:3649-3659.
    • (1994) Biochemistry , vol.33 , pp. 3649-3659
    • Lipscomb, L.A.1    Peek, M.E.2    Zhou, F.X.3    Bertrand, J.A.4    Vanderveer, D.5    Williams, L.D.6
  • 18
    • 0029076479 scopus 로고
    • Alternating and non-alternating dG-dC hexanucleotides crystallize as canonical A-DNA
    • Mooers, B. H., G. P. Schroth, W. W. Baxter, and P. S. Ho. 1995. Alternating and non-alternating dG-dC hexanucleotides crystallize as canonical A-DNA. J. Mol. Biol. 249:772-784.
    • (1995) J. Mol. Biol. , vol.249 , pp. 772-784
    • Mooers, B.H.1    Schroth, G.P.2    Baxter, W.W.3    Ho, P.S.4
  • 19
    • 0026489996 scopus 로고
    • Unusual conformation at low pH revealed by NMR: Parallel-stranded DNA duplex with homo base pairs
    • Robinson, H., G. A. van der Marel, J. H. van Boom, and A. H. Wang. 1992. Unusual conformation at low pH revealed by NMR: parallel-stranded DNA duplex with homo base pairs. Biochemistry. 31:10510-10517.
    • (1992) Biochemistry , vol.31 , pp. 10510-10517
    • Robinson, H.1    Van Der Marel, G.A.2    Van Boom, J.H.3    Wang, A.H.4
  • 20
    • 0027292881 scopus 로고
    • 5′-CGA sequence is a strong motif for homo base-paired parallel-stranded DNA duplex as revealed by NMR analysis
    • Robinson, H., and A. H. Wang. 1993. 5′-CGA sequence is a strong motif for homo base-paired parallel-stranded DNA duplex as revealed by NMR analysis. Proc. Natl. Acad. Sci. USA. 90:5224-5228.
    • (1993) Proc. Natl. Acad. Sci. USA , vol.90 , pp. 5224-5228
    • Robinson, H.1    Wang, A.H.2
  • 23
    • 0027377079 scopus 로고
    • Molecular dynamics investigations of DNA triple helical models: Unique features of the Watson-Crick duplex
    • Sekharudu, C. Y., N. Yathindra, and M. Sundaralingam. 1993. Molecular dynamics investigations of DNA triple helical models: unique features of the Watson-Crick duplex. J. Biomol. Struct. Dyn. 11:225-244.
    • (1993) J. Biomol. Struct. Dyn. , vol.11 , pp. 225-244
    • Sekharudu, C.Y.1    Yathindra, N.2    Sundaralingam, M.3
  • 24
    • 0018801072 scopus 로고
    • Polynucleotide block polymers consisting of a DNA/RNA hybrid joined to a DNA/DNA duplex
    • Selsing, E., and R. D. Wells. 1978. Polynucleotide block polymers consisting of a DNA/RNA hybrid joined to a DNA/DNA duplex. J. Biol. Chem. 254:5410-5416.
    • (1978) J. Biol. Chem. , vol.254 , pp. 5410-5416
    • Selsing, E.1    Wells, R.D.2
  • 25
    • 0018397705 scopus 로고
    • Bent DNA: Visualization of a base-paired and stacked A-B conformational junction
    • Selsing, E., R. D. Wells, C. J. Alden, and A. Struther. 1978a. Bent DNA: visualization of a base-paired and stacked A-B conformational junction. J. Biol. Chem. 254:5417-5422.
    • (1978) J. Biol. Chem. , vol.254 , pp. 5417-5422
    • Selsing, E.1    Wells, R.D.2    Alden, C.J.3    Struther, A.4
  • 26
    • 0018137538 scopus 로고
    • Two contiguous conformations in a nucleic acid duplex
    • Selsing, E., R. D. Wells, T. A. Early, and D. R. Kearns. 1978b. Two contiguous conformations in a nucleic acid duplex. Nature. 275: 249-250.
    • (1978) Nature , vol.275 , pp. 249-250
    • Selsing, E.1    Wells, R.D.2    Early, T.A.3    Kearns, D.R.4
  • 27
    • 0029036254 scopus 로고
    • Base-pair opening and spermine binding - B-DNA features displayed in the crystal structure of a gal operon fragment: Implications for protein-DNA recognition
    • Tari, L. W., and A. S. Secco. 1995. Base-pair opening and spermine binding - B-DNA features displayed in the crystal structure of a gal operon fragment: implications for protein-DNA recognition. Nucleic Acids Res. 23:2065-2073.
    • (1995) Nucleic Acids Res. , vol.23 , pp. 2065-2073
    • Tari, L.W.1    Secco, A.S.2
  • 28
    • 0000544965 scopus 로고
    • High-resolution refinement of the hexagonal A-DNA octamer d(GTGTA-CAC) at 1.4 Å
    • Thota, N., X. H. Li, C. Bingman, and M. Sundaralingam. 1993. High-resolution refinement of the hexagonal A-DNA octamer d(GTGTA-CAC) at 1.4 Å. Acta Crystallogr. D. 49:282-291.
    • (1993) Acta Crystallogr. D. , vol.49 , pp. 282-291
    • Thota, N.1    Li, X.H.2    Bingman, C.3    Sundaralingam, M.4
  • 29
    • 0025945390 scopus 로고
    • Groove-backbone interaction in B-DNA - Implication for DNA condensation and recombination
    • Timsit, Y., and D. Moras. 1991. Groove-backbone interaction in B-DNA - implication for DNA condensation and recombination. J. Mol. Biol. 221:919-940.
    • (1991) J. Mol. Biol. , vol.221 , pp. 919-940
    • Timsit, Y.1    Moras, D.2
  • 31
    • 0022325950 scopus 로고
    • Resolution of phase ambiguity in macromolecular crystallography
    • Wang, B. C. 1985. Resolution of phase ambiguity in macromolecular crystallography. Methods Enzymol. 115:90-112.
    • (1985) Methods Enzymol. , vol.115 , pp. 90-112
    • Wang, B.C.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.