Linker histories affect patterns of digestion of supercoiled plasmids by single-strand-specific nucleases

Proceedings of the National Academy of Sciences of the United States of America

Volumn 93, Issue 14, 1996, Pages 6970-6974

  Ivanchenko, Maria ^a   Zlatanova, Jordanka ^a,b   Varga Weisz, Patrick ^a,c   Hassan, Ahmed ^a   Van Holde, Kensal ^a  

^a OREGON STATE UNIVERSITY   (United States)

^b INSTITUTE OF PHYSIOLOGY   (Bulgaria)

^c EUROPEAN MOLECULAR BIOLOGY LABORATORY   (Germany)

Author keywords

DNA topology; Histone H1; Superhelicity

Indexed keywords

HISTONE H1; HISTONE H5; NUCLEASE S1; PLASMID DNA;

AMINO TERMINAL SEQUENCE; ANIMAL CELL; ARTICLE; CARBOXY TERMINAL SEQUENCE; CONTROLLED STUDY; DNA CLEAVAGE; DNA CONFORMATION; DNA PURIFICATION; DNA STRUCTURE; DNA SUPERCOILING; NONHUMAN; PLASMID; PRIORITY JOURNAL; PROTEIN DNA BINDING; PROTEIN DOMAIN; PROTEIN PURIFICATION; TWO DIMENSIONAL ELECTROPHORESIS;

ASPERGILLUS NUCLEASE S1; BINDING SITES; DEOXYRIBONUCLEASE ECORI; DNA TOPOISOMERASES, TYPE I; DNA, SUPERHELICAL; HISTONES; NUCLEIC ACID CONFORMATION; OLIGODEOXYRIBONUCLEOTIDES; PLASMIDS; SUBSTRATE SPECIFICITY; TRITICUM;

EID: 0030002199     PISSN: 00278424     EISSN: None     Source Type: Journal    
DOI: 10.1073/pnas.93.14.6970     Document Type: Article

References (32)

1. Vogel, T. & Singer, M. F. (1975) Proc. Natt. Acad. Sci. USA 72, 2597-2600.
2. Vogel, T. & Singer, M. F. (1976) J. Biol. Chem. 251, 2334-2338.
3. Krylov, D., Leuba, S., van Holde, K. & Zlatanova, J. (1993) Proc. Natl. Acad. Sci. USA 90, 5052-5056.
4. Varga-Weisz, P., van Holde, K. & Zlatanova, J. (1993) J. Biol. Chem. 268, 20699-20700.
5. Varga-Weisz, P., Zlatanova, J., Leuba, S. H., Schroth, G. P. & van Holde, K. (1994) Proc. Natl. Acad. Sci. USA 91, 3525-3529.
6. Lilley, D. M. J. (1992) Nature (London) 357, 282-283.
7. Javaherian, K., Liu, L. F. & Wang, J. C. (1978) Science 199, 1345-1346.
8. Sheflin, L. G. & Spaulding, S. W. (1989) Biochemistry 28, 5658-5664.
9. Sheflin, L. G., Fucile, N. W. & Spaulding, S. W. (1993) Biochemistry 32, 3238-3248.
10. Nissen, M. S. & Reeves, R. (1995) J. Biol. Chem. 270, 4355-4360.
11. Pulleyblank, D. E., Glover, M., Farah, C. & Haniford, D. B. (1987) in Unusual DNA Structures, eds. Wells, R. D. & Harvey, S. C. (Springer, New York), pp. 23-44.
12. Kowalski, D., Natale, D. A. & Eddy, M. J. (1988) Proc Natl. Acad. Sci. USA 85, 9464-9468.
13. Lilley, D. M. J. (1980) Proc. Natl. Acad. Sci. USA 77, 6468-6472.
14. Panayotatos, N. & Wells, R. D. (1981) Nature (London) 289, 466-470.
15. Nordheim, A., Lafer, E. M., Peck, L. J., Wang, J. C., Stollar, B. D. & Rich, A. (1982) Cell 31, 309-318.
16. Di Capua, E., Stasiak, A., Koller, Th., Brahms, S., Thomae R. & Pohl, F. M. (1983) EMBO J. 2, 1531-1535.
17. Johnston, B. H. (1988) J. Biomol. Struct. Dyn. 6, 153-166.
18. Sheflin, L. G. & Kowalski, D. (1985) Nucleic Acids Res. 13, 6137-6154.
19. Maniatis, T., Fritsch, E. F. & Samhrook, J. (1982) Molecular Cloning: A Laboratory Manual (Cold Spring Harbor Lab Press Cold Spring Harbor, NY), 2nd Ed.
20. Banchev, T., Srebreva, L. & Zlatanova, J. (1991) Biochim. Biophys. Acta 1073, 230-232.
21. Laemmli, U. K. (1970) Nature (London) 227, 680-685.
22. Camerini-Otero, R. D., Sollner-Webb, B. & Felsenfeld, G. (1976) Cell 8, 333-347.
23. Singleton, C. K. & Wells, R. D. (1982) Anal. Biochem. 122, 253-257.
24. Yaneva, J. & Zlatanova, J. (1992) DNA Cell Biol. 11, 91-99.
25. Naimushin, A. N., Clendenning, J. B., Kim, U.-S., Song, L., Fujimoto, B. S., Stewart, D. W. & Schurr, J. M. (1994) Biophys. Chem. 52, 219-226.
26. Zlatanova, J. & van Holde, K. (1996) Prog. Nucleic Acid Res. Mol. Biol. 52, 217-259.
27. McClellan, J. A., Palecek, E. & Lilley, D. M. J. (1986) Nucleic Acids Res. 14, 9291-9309.
28. Suggs, J. W. & Wagner, R. W. (1986) Nucleic Acids Res. 14, 3703-3716.
29. Bina-Stein, M., Vogel, T., Singer, D. S. & Singer, M. F. (1976) J. Biol. Chem. 251, 7363-7366.
30. Zlatanova, J., Yaneva, J., Ivanchenko, M., Varga-Weisz, P., Schroth, G. P. & van Holde, K. (1996) in Biological Structure and Dynamics, eds. Sarma, R. H. & Sarma, M. H. (Adenine Press, Schenectady, NY), in press.
31. Takeuchi, H. & Sasamori, J. (1994) Biopolymers 35, 359-367.
32. Zlatanova, J. & Yaneva, J. (1991) Mol. Biol. Rep. 15, 53-56.