Human papillomavirus type 70 genome cloned from overlapping PCR products: Complete nucleotide sequence and genomic organization

Journal of Clinical Microbiology

Volumn 34, Issue 4, 1996, Pages 802-809

  Forslund, Ola ^a   Hansson, Bengt Göran ^a  

^a LUND UNIVERSITY   (Sweden)

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; CONDYLOMA; GENE SEQUENCE; GENE TARGETING; GENOME; HUMAN; NUCLEOTIDE SEQUENCE; PAPILLOMA VIRUS; POLYMERASE CHAIN REACTION; PRIORITY JOURNAL; SEQUENCE ANALYSIS; SEQUENCE HOMOLOGY;

EID: 0030001796     PISSN: 00951137     EISSN: None     Source Type: Journal    
DOI: 10.1128/jcm.34.4.802-809.1996     Document Type: Article

References (43)

1. Barnes, W. M. 1977. Plasmid detection and sizing in single colony lysates Science 195:393-394.
2. Barnes, W. M. 1994. PCR amplification of up to 35-kb DNA with high fidelity and high yield from X bacteriophage templates.. Proc. Natl Acad. Sci. USA 91:2216-2220.
3. Chan, S. Y., H. U. Bernard, C. K. Ong, S. P. Chan, B. Hofmann, and H. Delius. 1992. Phylogenetic analysis of 48 papillomavirus types and 28 subtypes and variants: a showcase for the molecular evolution of DNA viruses. J. Virol. 66:5714-5725.
4. Chan, W. K., G. Klock, and H. U. Bernard. 1989. Progesterone and glucocorticoid responsive element occur in the long control regions of several human papillomaviruses involved in anogenital neoplasia. J. Virol. 63:3261-3269.
5. Chen, E. Y., P. M. Howley, A. D. Levinson, and P. H. Seeburg. 1982. The primary structure and genetic organisation of the bovine papillomavirus type 1 genome. Nature (London) 299:529-534.
6. Cheng. S., S. Y. Chang, P. Gravitt, and R. Press. 1994. Long PCR. Nature (London) 369:684-685.
7. Cheng, S., C. Fockler, W. M. Barnes, and R. Higuchi. 1994. Effective amplification of long targets from cloned inserts and human DNA. Proc. Natl. Acad. Sci. USA 91:5695-5699.
8. Cheng, S., R. Higuchi, and M. Stoneking. 1994. Complete mithocondrial genome amplification. Nat Genet. 7:350-351.
9. Cole, S. T., and O. Danos. 1987. Nucleotide sequence and comparative analysis of the human papillomavirus type 18 genome J. Mol. Biol. 193:599-608.
10. Danos, O., M. Katinka, and M. Yaniv. 1982. Human papillomavirus 1a complete DNA sequence, a novel type of genome organization among papovaviridae. EMBO J. 1:231-236.
11. Delius, H., and B. Hofmann. 1994. Human papillomavirus type 45 genomic DNA Accession number X74479. EMBL/Genbank, Bethesda, Md.
12. de Villiers, E.-M. 1989. Heterogeneity of the human papillomavirus group. J. Virol. 63:4898-4903.
13. dc Villiers, E. M. 1994. Human pathogenic papillomavirus types: an update. Curr. Top. Microbiol. Immunol 186:1-12
14. Dower, W. J., J. F. Miller, and C. W. Ragsdale. 1988. High efficiency transformation of E. coli by high voltage electroporation. Nucleic Acids Res. 16:6127-6145.
15. Eckert, K. A., and T. A. Kunkel. 1991. DNA polymerase fidelity and the polymerase chain reaction. PCR Methods Applic. 1:17-24
16. Evans, R. M., and S. M. Stollenberg. 1988. Zinc fingers: gilt by association. Cell 52:1-3.
17. Foord, O. S., and E. A. Rose. 1994. Long-distance PCR PCR Methods Applic 3:149-161
18. Forslund, O., B. G. Hansson, and B. Bjerre. 1994. Typing of human papillomaviruses by consensus polymerase chain reaction and a non-radioactive reverse dot blot hybridization J. Virol Methods 49:129-140.
19. Forslund, O., B. G. Hansson, P. Rymark, and B. Bjerre. 1993. Human papillomavirus DNA in urine samples compared with that in simultaneously collected urethra and cervix samples. J. Clin. Microbiol. 31:1975-1979.
20. Heilman, C. A., M. F. Law, M. A. Israel, and P. M. Howley. 1980. Cloning of human papilloma virus genomic DNAs and analysis of homologous polynucleotide sequences. J. Virol. 36:395-407.
21. Heinkoff, S. 1984. Unidirectional digestion with exonuclease III creates targeted breakpoints for DNA sequencing. Gene 28:351-359.
22. Iwamoto, A., H. Yoshikawa, K. Kitagawa, H. Igarashi, T. Kawana, and H. Yoshikura. 1992. Short sequence in LI region of human papillomaviruses correlates with clinical pictures and grouping by cross-hybridization. Jpn. J. Cancer Res. 83:315-319.
23. Longuet. M., S. Beaudenon, and G. Orth. 1996. Two novel genital human papillomavirus (HPV) types. HPV68 and HPV70, related to the potentially oncogenic HPV39. J Clin. Microbiol. 34:738-744.
24. Ong, C. K., H. U. Bernard, and L. L. Villa. 1994. Identification of genomic sequences of three novel human papillomavirus sequences in cervical smears of Amazonian Indians. J. Infect. Dis. 170:1086-1088.
25. Orth, G., M. Favre, and O. Croissant. 1977. Characterization of a new type of human papillomavirus that causes skin warts. J. Virol. 24:108-120.
26. Peyton, C. L., and C. M. Wheeler. 1994. Identification of five novel human papillomavirus sequences in the New Mexico triethnic population. J. Infect. Dis. 170:1089-1092.
27. Rho, J., A. Roy-Burman, H. Kim, E. M. de Villiers, T. Matsukura, and J. Choe. 1994. Nucleotide sequence and phylogenetic classification of human papillomavirus type 59. Virology 203:158-161.
28. Rymark, P., O. Forslund, B. G. Hansson, and K. Lindholm. 1993. Genital HPV infection not a local but a regional infection: experience from a female teenage group. Genitourin. Med. 69:18-22
29. Saiki, R. K., D- H. Gelfand. S. Stoffel, S. Scharf, R. H. Higuchi, G. T. Horn, K. B. Mullis, and H. A. Erlich. 1988 Primer-directed enzymatic amplification of DNA with a thermostable DNA polymerase. Science 239:487-491.
30. Sambrook, J., E. F. Fritsch, and T. Maniatis. 1989. Molecular cloning: a laboratory manual, 2nd ed. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, N.Y.
31. Schiffmann, M. H. 1994. Epidemiology of cervical human papillomavirus infections. Curr. Top. Microbiol. Immunol. 186:55-81.
32. Smits, H. L., L. M. Tieben, S. P. Tjong-A-Hung, M. F. Jebbink, R. P. Minnaar, C. L. Jansen, and J. ter Schegget. 1992. Detection and typing of human papillomaviruses present in fixed and stained archival cervical smears by a consensus polymerase chain reaction and direct sequence analysis allow the identification of a broad spectrum of human papillomavirus types. J. Gen Virol. 73:3263-3268.
33. Spalholz, B. A., Y. Yang, and P. M. Howley. 1985. Transactivation of bovine papillomavirus transcriptional regulatory element by the E2 gene product. Cell 42:183-191.
34. Stewart, A. C. M., P. E. Gravitt, S. Cheng, and C. M. Wheeler. 1995 Generation of entire human papillomavirus genomes by long PCR: frequency of errors produced during amplification PCR Methods Applic. 5:79-88.
35. Tachezy, R., M. A. Van Ranst, Y. Cruz, and R. D. Burk. 1994. Analysis of short novel human papillomavirus sequences. Biochem. Biophys. Res Commun. 204:820-827.
36. Tartof, K. D., and C. A. Hobbs. 1987. Improved media for growing plasmid and cosmids clones. Bethesda Res Lab. Focus 9:12
37. Ting, Y., and M. M. Manos. 1990. Detection and typing of genital human papillomaviruses, p. 356-367. In M. A. Innis, D. H. Gelfand, J. J. Sninsky, and T. J. White (ed.), PCR protocols: a guide to methods and applications. Academic Press, Inc., San Diego, Calif.
38. Turek, L. P. 1994. The structure function, and regulation of papillomaviral genes in infection and cervical cancer, p. 305-356. In K. Maramorosch, F. A. Murphy, and A. J. Shatkin (ed.), Advances in virus research. Academic Press, Inc., San Diego, Calif.
39. Van Ranst, M., J. B. Kaplan, and R.D. Burk. 1992. Phylogenetic classffica-tion of human papillomaviruses: correlation with clinical manifestation. J. Gen. Virol. 73:2653-2660.
40. Van Ranst, M. A., R. Tachezy, H. Delius, and R. D. Burk. 1993. Taxonomy of the human papillomaviruses. Papillomavirus Rep. 4:61-65.
41. Volpers, C., and R, E. Streeck. 1990. Genome organization and nucleotide sequence of human papillomavirus type 39. Virology 181:419-423
42. Wingender, E. 1988. Compilation of transcription regulating proteins. Nucleic Acids Res. 16:1887-1902
43. zur Hausen, H., and E. M. de Villiers. 1994. Human papillomavirus. Annu. Rev. Microbiol. 48:427-447.