-
2
-
-
2342482716
-
Determination of protein structures in solution using NMR data and IMPACT
-
Bassolino DA, Hirata F, Kitchen D, Kominos D, Pardi A, Levy R. 1988. Determination of protein structures in solution using NMR data and IMPACT. Intl J Supercomp Appl 21:41-61.
-
(1988)
Intl J Supercomp Appl
, vol.21
, pp. 41-61
-
-
Bassolino, D.A.1
Hirata, F.2
Kitchen, D.3
Kominos, D.4
Pardi, A.5
Levy, R.6
-
3
-
-
85023395027
-
13C J couplings in a 20 kDa protein-peptide complex
-
13C J couplings in a 20 kDa protein-peptide complex. J Am Chem Soc 114: 6923-6925
-
(1992)
J Am Chem Soc
, vol.114
, pp. 6923-6925
-
-
Bax, A.1
Max, D.2
Zax, D.3
-
4
-
-
0001955477
-
Multidimensional NMR experiments and analysis techniques for determining homo- and heteronuclear scalar coupling constants in proteins and nucleic acids
-
Biamonti C, Rios CB, Lyons BA, Montelione GT. 1994. Multidimensional NMR experiments and analysis techniques for determining homo- and heteronuclear scalar coupling constants in proteins and nucleic acids Adv Biophys Chem 4:51-120.
-
(1994)
Adv Biophys Chem
, vol.4
, pp. 51-120
-
-
Biamonti, C.1
Rios, C.B.2
Lyons, B.A.3
Montelione, G.T.4
-
5
-
-
0022336792
-
Calculation of protein conformations by proton-proton distance constraints: A new efficient algorithm
-
Braun W, Gō N 1985. Calculation of protein conformations by proton-proton distance constraints: A new efficient algorithm. J Mol Biol 186: 611-626
-
(1985)
J Mol Biol
, vol.186
, pp. 611-626
-
-
Braun, W.1
Go, N.2
-
6
-
-
84986512474
-
CHARMM: A program for macromolecular energy, minimization, and dynamics calculations
-
Brooks BR, Bruccoleri RE, Olafson BD, States DJ, Swaminathan S, Karplus M. 1983. CHARMM: A program for macromolecular energy, minimization, and dynamics calculations. J Comput Chem 4:187-217
-
(1983)
J Comput Chem
, vol.4
, pp. 187-217
-
-
Brooks, B.R.1
Bruccoleri, R.E.2
Olafson, B.D.3
States, D.J.4
Swaminathan, S.5
Karplus, M.6
-
7
-
-
0023173201
-
Prediction of the folding of short polypeptide segments by uniform conformational sampling
-
Bruccoleri RE, Karplus M. 1987. Prediction of the folding of short polypeptide segments by uniform conformational sampling. Biopolymers 26:137-168.
-
(1987)
Biopolymers
, vol.26
, pp. 137-168
-
-
Bruccoleri, R.E.1
Karplus, M.2
-
9
-
-
0000870109
-
Three-dimensional structure of proteins determined by molecular dynamics with interproton distance restraints: Application to crambin
-
Brunger AT, Clore GM, Gronenborn AM, Karplus M. 1986. Three-dimensional structure of proteins determined by molecular dynamics with interproton distance restraints: Application to crambin. Proc Natl Acad Sci USA 53:3801-3805.
-
(1986)
Proc Natl Acad Sci USA
, vol.53
, pp. 3801-3805
-
-
Brunger, A.T.1
Clore, G.M.2
Gronenborn, A.M.3
Karplus, M.4
-
10
-
-
0003619210
-
Molecular dynamics simulations of the proline conformational equilibrium and dynamics in Antamanide using the GROMOS force field
-
Brunne RM, van Gunsteren WF, Bruschweiler R, Ernst RR. 1993. Molecular dynamics simulations of the proline conformational equilibrium and dynamics in Antamanide using the GROMOS force field. J Am Chem Soc 115:4764-4768.
-
(1993)
J Am Chem Soc
, vol.115
, pp. 4764-4768
-
-
Brunne, R.M.1
Van Gunsteren, W.F.2
Bruschweiler, R.3
Ernst, R.R.4
-
11
-
-
49349130990
-
Spin-spin coupling and the conformational states of peptide systems
-
Bystrov VF. 1976. Spin-spin coupling and the conformational states of peptide systems. Prog NMR Spectroscopy 10:41-81.
-
(1976)
Prog NMR Spectroscopy
, vol.10
, pp. 41-81
-
-
Bystrov, V.F.1
-
13
-
-
0025871254
-
Structures of larger proteins in solution: Three and four dimensional heteronuclear NMR spectroscopy
-
Clore GM, Gronenborn AM. 1991. Structures of larger proteins in solution: Three and four dimensional heteronuclear NMR spectroscopy. Science 252:1390-1399.
-
(1991)
Science
, vol.252
, pp. 1390-1399
-
-
Clore, G.M.1
Gronenborn, A.M.2
-
14
-
-
0028389672
-
Structures of larger proteins, protein-ligand, and protein-DNA complexes by multidimensional heteronuclear NMR
-
Clore GM, Gronenborn AM. 1994. Structures of larger proteins, protein-ligand, and protein-DNA complexes by multidimensional heteronuclear NMR. Protein Sci 3:372-390.
-
(1994)
Protein Sci
, vol.3
, pp. 372-390
-
-
Clore, G.M.1
Gronenborn, A.M.2
-
15
-
-
0029351467
-
J-coupling restraint potentials for non-stereospecifically assigned methylene protons and ensemble average calculations
-
Constantine KL, Friedrichs MS, Mueller L, Bruccoleri RE. 1995a. J-coupling restraint potentials for non-stereospecifically assigned methylene protons and ensemble average calculations. J Magn Reson Ser B 108:176-184.
-
(1995)
J Magn Reson Ser B
, vol.108
, pp. 176-184
-
-
Constantine, K.L.1
Friedrichs, M.S.2
Mueller, L.3
Bruccoleri, R.E.4
-
16
-
-
0029608647
-
Structural and dynamic properties of a β-hairpin-forming linear peptide. I. Modeling using ensemble averaged constraints
-
Constantine KL, Mueller L, Andersen NH, Tong H, Wandler CF, Friedrichs MS, Bruccoleri RE. 1995b. Structural and dynamic properties of a β-hairpin-forming linear peptide. I. Modeling using ensemble averaged constraints. J Am Chem Soc 117:10841-10854.
-
(1995)
J Am Chem Soc
, vol.117
, pp. 10841-10854
-
-
Constantine, K.L.1
Mueller, L.2
Andersen, N.H.3
Tong, H.4
Wandler, C.F.5
Friedrichs, M.S.6
Bruccoleri, R.E.7
-
17
-
-
0024595937
-
Determination of the 3D solution structure of the antihypertensive and antiviral protein BDS-I from the sea anemone Anemonia sulcata. A study using NMR and hybrid distance geometry-dynamical simulated annealing
-
Driscoll PC, Gronenborn AM, Bergess L, Clore GM 1989. Determination of the 3D solution structure of the antihypertensive and antiviral protein BDS-I from the sea anemone Anemonia sulcata. A study using NMR and hybrid distance geometry-dynamical simulated annealing. Biochemistry 28:2168-2198.
-
(1989)
Biochemistry
, vol.28
, pp. 2168-2198
-
-
Driscoll, P.C.1
Gronenborn, A.M.2
Bergess, L.3
Clore, G.M.4
-
19
-
-
0024498476
-
Solution structure of recombinant hirudin and the Lys-47-Glu mutant. A NMR and hybrid distance geometry-dynamical simulated annealing study
-
Folkers PJM, Clore GM, Driscoll PC, Dodt J, Köhler S, Gronenborn AM. 1989. Solution structure of recombinant hirudin and the Lys-47-Glu mutant. A NMR and hybrid distance geometry-dynamical simulated annealing study. Biochemistry 28:2601-2617.
-
(1989)
Biochemistry
, vol.28
, pp. 2601-2617
-
-
Folkers, P.J.M.1
Clore, G.M.2
Driscoll, P.C.3
Dodt, J.4
Köhler, S.5
Gronenborn, A.M.6
-
22
-
-
3042865614
-
Correlation of connected transitions by 2D NMR spectroscopy
-
Griesinger C, Sørensen OW, Ernst RR. 1986. Correlation of connected transitions by 2D NMR spectroscopy. J Chem Phys 85:6837-6852.
-
(1986)
J Chem Phys
, vol.85
, pp. 6837-6852
-
-
Griesinger, C.1
Sørensen, O.W.2
Ernst, R.R.3
-
23
-
-
33845183709
-
1H NMR assignments and their impact on the precision of protein structure determination in solution
-
1H NMR assignments and their impact on the precision of protein structure determination in solution. J Am Chem Soc 111:3997-4004.
-
(1989)
J Am Chem Soc
, vol.111
, pp. 3997-4004
-
-
Güntert, P.1
Braun, W.2
Billeter, M.3
Wuthrich, K.4
-
24
-
-
0026089657
-
Efficient computation of three-dimensional protein structures in solution from nuclear magnetic resonance data using the program DIANA and the supporting programs CALIBA, HABAS, and GLOMSA
-
Guntert P, Braun W, Wüthrich K. 1991. Efficient computation of three-dimensional protein structures in solution from nuclear magnetic resonance data using the program DIANA and the supporting programs CALIBA, HABAS, and GLOMSA. J Mol Biol 217:517-530.
-
(1991)
J Mol Biol
, vol.217
, pp. 517-530
-
-
Guntert, P.1
Braun, W.2
Wüthrich, K.3
-
25
-
-
0023045507
-
Three dimensional structure of a DNA hairpin in solution: Two dimensional NMR studies and distance geometry calculations on d(CGCGTTTTCGCG)
-
Hare DR, Reid BR. 1986. Three dimensional structure of a DNA hairpin in solution: Two dimensional NMR studies and distance geometry calculations on d(CGCGTTTTCGCG). Biochemistry 25:5341-5350
-
(1986)
Biochemistry
, vol.25
, pp. 5341-5350
-
-
Hare, D.R.1
Reid, B.R.2
-
26
-
-
0025294066
-
The sampling properties of some distance geometry algorithms applied to unconstrained polypeptide chains: A study of 1830 independently computed conformations
-
Havel TF. 1991a. The sampling properties of some distance geometry algorithms applied to unconstrained polypeptide chains: A study of 1830 independently computed conformations. Biopolymers 29:1565-1585.
-
(1991)
Biopolymers
, vol.29
, pp. 1565-1585
-
-
Havel, T.F.1
-
27
-
-
0025932859
-
An evaluation of computational strategies for use in the determination of protein structure from distance constraints obtained by NMR
-
Havel TF. 1991b. An evaluation of computational strategies for use in the determination of protein structure from distance constraints obtained by NMR. Prog Biophys Mol Biol 561:43-78.
-
(1991)
Prog Biophys Mol Biol
, vol.561
, pp. 43-78
-
-
Havel, T.F.1
-
29
-
-
0022429234
-
An evaluation of the combined use of NMR and distance geometry for the determination of protein conformations in solution
-
Havel TF, Wuthrich K. 1985. An evaluation of the combined use of NMR and distance geometry for the determination of protein conformations in solution. J Mol Biol 182:281-294.
-
(1985)
J Mol Biol
, vol.182
, pp. 281-294
-
-
Havel, T.F.1
Wuthrich, K.2
-
30
-
-
0019450355
-
Structure of the hydrophobic protein crambin determined directly from the anomalous scattering of sulfur
-
Hendrickson WA, Teeter MM. 1981. Structure of the hydrophobic protein crambin determined directly from the anomalous scattering of sulfur. Nature 290:107-113.
-
(1981)
Nature
, vol.290
, pp. 107-113
-
-
Hendrickson, W.A.1
Teeter, M.M.2
-
31
-
-
0030043942
-
The mechanism of binding staphylococcal protein A to immunoglobin G does not involve helix unwinding
-
Jendeberg L, Tashiro M, Tejero R, Lyons B, Uhlén M, Montelione GT, Nilsson B. 1996. The mechanism of binding staphylococcal protein A to immunoglobin G does not involve helix unwinding. Biochemistry. 35:22-31.
-
(1996)
Biochemistry
, vol.35
, pp. 22-31
-
-
Jendeberg, L.1
Tashiro, M.2
Tejero, R.3
Lyons, B.4
Uhlén, M.5
Montelione, G.T.6
Nilsson, B.7
-
32
-
-
0022419169
-
A protein structure from NMR data - lac Repressor headpiece
-
Kaptein R, Zuiderweg ERP, Scheek RM, Boelens R, van Gunsteren WF. 1985. A protein structure from NMR data - lac Repressor headpiece. J Mol Biol 182:179-182.
-
(1985)
J Mol Biol
, vol.182
, pp. 179-182
-
-
Kaptein, R.1
Zuiderweg, E.R.P.2
Scheek, R.M.3
Boelens, R.4
Van Gunsteren, W.F.5
-
33
-
-
33745356391
-
Contact electron-spin coupling of nuclear magnetic moments
-
Karplus M. 1959. Contact electron-spin coupling of nuclear magnetic moments. J Chem Phys 30:11-15.
-
(1959)
J Chem Phys
, vol.30
, pp. 11-15
-
-
Karplus, M.1
-
34
-
-
0025613125
-
Refinement of the NMR structures for acyl carrier protein with scalar coupling data
-
Kim Y, Prestegard JH. 1990. Refinement of the NMR structures for acyl carrier protein with scalar coupling data. Proteins Struct Funct Genet 8:377-385.
-
(1990)
Proteins Struct Funct Genet
, vol.8
, pp. 377-385
-
-
Kim, Y.1
Prestegard, J.H.2
-
35
-
-
0024595154
-
Calculating three dimensional molecular structures from atom-atom distance information: Cyclosporin A
-
Lautz J, Kessler H, Blaney JM, Scheek RM, van Gunsteren WF. 1989. Calculating three dimensional molecular structures from atom-atom distance information: Cyclosporin A. Intl J Pept Prot Res 33:281-288.
-
(1989)
Intl J Pept Prot Res
, vol.33
, pp. 281-288
-
-
Lautz, J.1
Kessler, H.2
Blaney, J.M.3
Scheek, R.M.4
Van Gunsteren, W.F.5
-
36
-
-
0024330926
-
Solution structures of proteins from NMR data and modeling: Alternative folds for neutrophil peptide 5
-
Levy RM, Bassolino DA, Kitchen DB, Pardi A. 1989. Solution structures of proteins from NMR data and modeling: Alternative folds for neutrophil peptide 5. Biochemistry 28:9361-9372.
-
(1989)
Biochemistry
, vol.28
, pp. 9361-9372
-
-
Levy, R.M.1
Bassolino, D.A.2
Kitchen, D.B.3
Pardi, A.4
-
37
-
-
84977303841
-
The geometry of the reactive site of the peptide groups in trypsin, trypsinogen and its complexes with inhibitors
-
Marquart M, Walter J, Diesenhofer J, Bode W, Huber R. 1983. The geometry of the reactive site of the peptide groups in trypsin, trypsinogen and its complexes with inhibitors. Acta Crystallogr B 39:480-490.
-
(1983)
Acta Crystallogr B
, vol.39
, pp. 480-490
-
-
Marquart, M.1
Walter, J.2
Diesenhofer, J.3
Bode, W.4
Huber, R.5
-
38
-
-
0024976542
-
Limited sampling of conformational space by the distance geometry algorithm: Implications for structures generated from NMR data
-
Metzler WJ, Hare DR, Pardi A. 1989. Limited sampling of conformational space by the distance geometry algorithm: Implications for structures generated from NMR data. Biochemistry 28:7045-7052.
-
(1989)
Biochemistry
, vol.28
, pp. 7045-7052
-
-
Metzler, W.J.1
Hare, D.R.2
Pardi, A.3
-
39
-
-
0026848911
-
A general approach for determining scalar coupling constants in polypeptides and proteins
-
Montelione GT, Emerson SD, Lyons BA. 1992. A general approach for determining scalar coupling constants in polypeptides and proteins. Biopolymers 32:327-334.
-
(1992)
Biopolymers
, vol.32
, pp. 327-334
-
-
Montelione, G.T.1
Emerson, S.D.2
Lyons, B.A.3
-
40
-
-
45149144324
-
Accurate measurements of long range heteronuclear coupling constants from homonuclear 2D NMR spectra of isotope enriched proteins
-
Montelione GT, Winkler ME, Rauenbuehler P, Wagner G. 1989. Accurate measurements of long range heteronuclear coupling constants from homonuclear 2D NMR spectra of isotope enriched proteins. J Magn Reson 82:198-204.
-
(1989)
J Magn Reson
, vol.82
, pp. 198-204
-
-
Montelione, G.T.1
Winkler, M.E.2
Rauenbuehler, P.3
Wagner, G.4
-
41
-
-
0028234777
-
Solution NMR structure of the major cold shock protein (CspA) from E. coli: Identification of a binding epitope for DNA
-
Newkirk K, Feng W, Jiang W, Tejero R, Emerson SD, Inouye M, Montelione GT. 1994. Solution NMR structure of the major cold shock protein (CspA) from E. coli: Identification of a binding epitope for DNA. Proc Natl Acad Sci USA 91:5114-5118.
-
(1994)
Proc Natl Acad Sci USA
, vol.91
, pp. 5114-5118
-
-
Newkirk, K.1
Feng, W.2
Jiang, W.3
Tejero, R.4
Emerson, S.D.5
Inouye, M.6
Montelione, G.T.7
-
42
-
-
0024285896
-
Determination of three-dimensional structures of proteins from inter-proton distance data by hybrid distance geometry-dynamical simulated annealing calculations
-
Nilges M, Clore GM, Gronenborn AM. 1988 Determination of three-dimensional structures of proteins from inter-proton distance data by hybrid distance geometry-dynamical simulated annealing calculations. FEBS Lett 229:317-324.
-
(1988)
FEBS Lett
, vol.229
, pp. 317-324
-
-
Nilges, M.1
Clore, G.M.2
Gronenborn, A.M.3
-
43
-
-
0025194652
-
1H-NMR stereospecific assignments by conformational data-base searches
-
1H-NMR stereospecific assignments by conformational data-base searches. Biopolymers 29:813-822.
-
(1990)
Biopolymers
, vol.29
, pp. 813-822
-
-
Nilges, M.1
Clore, G.M.2
Gronenborn, A.M.3
-
45
-
-
0000838671
-
Estimation of interatomic distances in proteins from NOE spectra at longer mixing times using an empirical two-spin equation
-
Suri AK, Levy RM. 1993. Estimation of interatomic distances in proteins from NOE spectra at longer mixing times using an empirical two-spin equation. J Mag Res Ser B 101:320-324.
-
(1993)
J Mag Res Ser B
, vol.101
, pp. 320-324
-
-
Suri, A.K.1
Levy, R.M.2
-
46
-
-
0027459475
-
Atomic resolution (0.83 Ā) crystal structure of the hydrophobic protein crambin at 130 K
-
Teeter MM, Roe SM, Heo NH. 1993. Atomic resolution (0.83 Ā) crystal structure of the hydrophobic protein crambin at 130 K. J Mol Biol 230: 292-311.
-
(1993)
J Mol Biol
, vol.230
, pp. 292-311
-
-
Teeter, M.M.1
Roe, S.M.2
Heo, N.H.3
-
47
-
-
0029920419
-
Simulated annealing with restrained molecular dynamics using CONGEN: Application in energy minimization of the NMR solution structures of epidermal and type-α transforming growth factors
-
Tejero R, Bassolino D, Bruccoleri R, Montelione GT. 1996. Simulated annealing with restrained molecular dynamics using CONGEN: Application in energy minimization of the NMR solution structures of epidermal and type-α transforming growth factors. Protein Sci 5:578-592.
-
(1996)
Protein Sci
, vol.5
, pp. 578-592
-
-
Tejero, R.1
Bassolino, D.2
Bruccoleri, R.3
Montelione, G.T.4
-
48
-
-
0027352894
-
Structure refinement using time-averaged J-coupling constant restraints
-
Torda AE, Brunne RM, Huber T, Kessler H, van Gunsteren WF. 1993. Structure refinement using time-averaged J-coupling constant restraints. J Biomol NMR 3:55-66.
-
(1993)
J Biomol NMR
, vol.3
, pp. 55-66
-
-
Torda, A.E.1
Brunne, R.M.2
Huber, T.3
Kessler, H.4
Van Gunsteren, W.F.5
-
49
-
-
0027661179
-
Metropolis Monte Carlo calculations of DNA structure using internal coordinates and NMR distance restraints: An alternative method of generating a high-resolution solution structure
-
Ulyanov NB, Schmitz U, James TL. 1993. Metropolis Monte Carlo calculations of DNA structure using internal coordinates and NMR distance restraints: An alternative method of generating a high-resolution solution structure. J Biomol NMR 3:547-568.
-
(1993)
J Biomol NMR
, vol.3
, pp. 547-568
-
-
Ulyanov, N.B.1
Schmitz, U.2
James, T.L.3
-
50
-
-
22944467757
-
Computer experiments on classical fluids. I. Thermodynamic properties of Lennard-Jones molecules
-
Verlet L. 1967. Computer experiments on classical fluids. I. Thermodynamic properties of Lennard-Jones molecules. Phys Rev 159:98-103.
-
(1967)
Phys Rev
, vol.159
, pp. 98-103
-
-
Verlet, L.1
-
51
-
-
0021603710
-
Structure of BPT1 - Results of joint neutron and X-ray refinement of crystal form II
-
Wlodawer A, Walter J, Huber R, Sjolin L. 1984 Structure of BPT1 - Results of joint neutron and X-ray refinement of crystal form II J Mol Biol 180:301-329.
-
(1984)
J Mol Biol
, vol.180
, pp. 301-329
-
-
Wlodawer, A.1
Walter, J.2
Huber, R.3
Sjolin, L.4
|