Allelic ladder characterization of the short tandem repeat polymorphism in intron 6 of the lipoprotein lipase gene and its application in an Austrian Caucasian Population Study

Journal of Forensic Sciences

Volumn 41, Issue 4, 1996, Pages 579-581

  Glock, Barbara ^a   Schwartz, Dieter W M ^a   Schwartz Jungl, Elisabeth M ^a   Mayr, Wolfgang R ^a  

^a UNIVERSITY OF VIENNA   (Austria)

Author keywords

allelic ladder; DNA; forensic science; human identification; HUMLPL; population genetics; short tandem repeats

Indexed keywords

DNA; LIPOPROTEIN LIPASE;

ALLELE; ARTICLE; CAUCASIAN; ELECTROPHORETIC MOBILITY; FORENSIC SCIENCE; GENE AMPLIFICATION; GENE FREQUENCY; GENE LOCATION; GENE LOCUS; GENETIC POLYMORPHISM; GENOTYPE; HUMAN; INTRON; POPULATION RESEARCH; PRIORITY JOURNAL; SEQUENCE ANALYSIS; TANDEM REPEAT;

EID: 0029996635     PISSN: 00221198     EISSN: None     Source Type: Journal    
DOI: 10.1520/jfs13958j     Document Type: Article

References (27)

1. Udalova IA, Nedospasov SA, Webb GC, Chaplin DD, Turetskaya RL. Highly informative typing of the human TNF locus using six adjacent polymorphic markers. Genomics 1993;16(1):180-86.
2. Tautz D, Trick M, Dover GA. Cryptic simplicity in DNA is a major source of genetic variation. Nature 1986;322(6080):652-56.
3. Edwards A, Hammond HA, Jin L, Caskey CT, Chakraborty R. Genetic variation at five trimeric and tetrameric tandem repeat loci in four human population groups. Genomics 1992;12:241-53.
4. Tautz D. Hypervariability of simple sequences as a general source for polymorphic DNA markers. Nucl Acids Res 1989;17(16):6463-71.
5. Sajantila A, Budowle B, Strom M, Johnsson V, Lukka M, et al. PCR amplification of alleles at the DIS80 locus: comparison of a Finnish and a North American Caucasian population sample, and forensic casework evaluation. Am J Hum Genet 1992;50(4):816-25.
6. Devlin B, Risch N. Ethnic differentiation at VNTR loci, with special reference to forensic applications. Am J Hum Gen 1992; 51(3):534-48.
7. Gill P, Ivanov PL, Kimpton C, Piercy R, Benson N, et al. Identification of the remains of the Romanov family by DNA analysis. Nature Gen 1994;6(2):130-35.
8. Kurosaki K, Matsushita T, Ueda S. Individual DNA identification from ancient human remains. Am J Hum Gen 1993;53:638-43.
9. Morling N, Hansen HE. Paternity testing with VNTR DNA systems. I. Matching criteria and population frequencies of the VNTR systems D2S44, D5S43, D7S21, D7S22, and D12S11 in Danes. Int J Leg Med 1993;105(4):189-96.
10. Hansen HE, Morling N. Paternity testing with VNTR DNA systems. II. Evaluation of 271 cases of disputed paternity with the VNTR systems D2S44, D5S43, D7S21, D7S22, and D12S11. Int J Leg Med 1993;105(4):197-202.
11. Dawson E, Shaikh S, Weber JL, Wang Z, Weissenbach J, et al. A continuous linkage map of 22 short tandem repeat polymorphisms on human chromosome 12. Genomics 1993;17(1):245-48.
12. Kumar Singh R, Humphries P. Isolation and genetic mapping of four microsatellite repeats from chromosome 3p21 using 40 CEPH pedigrees. Genomics 1993;18:3717-19.
13. Jeffreys AJ, Wilson V, Neumann R, Keyte J. Amplification of human minisatellites by the polymerase chain reaction: towards DNA fingerprinting of single cells. Nucl Acids Res 1988;16(23):10953-71.
14. Bassam BJ, Caetano Anolles G, Gresshoff PM. Fast and sensitive silver staining of DNA in polyacrylamide gels. Analyt Biochem 1991;196(1):80-83.
15. Budowle B, Chakraborty R, Giusti AM, Eisenberg AJ, Allen RC. Analysis of the VNTR locus D1S80 by the PCR followed by high-resolution PAGE. Am J Hum Gen 1991;48(1):137-44.
16. Skowasch K, Wiegand P, Brinkmann B. pMCT 118 (D1S80): a new allelic ladder and an improved electrophoretic separation lead to the demonstration of 28 alleles. Int J Leg Med 1992;105(3):165-68.
17. Rand S, Puers C, Skowasch K, Wiegand P, Budowle B, et al. Population genetics and forensic efficiency data of 4 AMPFLP's. Int J Leg Med 1992;104:329-33.
18. Puers C, Hammond HA, Jin L, Caskey CT, Schumm JW. Identification of repeat sequence heterogeneity at the polymorphic short tandem repeat locus HUMTH01[AATG]n and reassignment of alleles in population analysis by using a locus-specific allelic ladder Am J Hum Gen 1993;53(4):953-58.
19. Puers C, Hammond HA, Caskey CT, Lins AM, Sprecher CJ, et al. Allelic ladder characterization of the short tandem repeat polymorphism located in the 5′ flanking region to the human coagulation factor XIII A subunit gene. Genomics 1994;23(1):260-64.
20. Moeller A, Meyer E, Brinkmann B. Different types of structural variation in STRs: HumFES/FPS, HumVWA and HumD21S11. Int J Leg Med 1994;106(6):319-23.
21. Zuliani G, Hobbs HH. Tetranucleotide repeat polymorphism in the LPL gene. Nucl Acids Res 1990;18(16):4958.
22. Wall WJ, Williamson R, Petrou M, Papaioannou D, Parkin BH. Variation of short tandem repeats within and between populations. Hum Molec Gen 1993;2(7):1023-29.
23. Miller SA, Dykes DD, Polesky HF. A simple salting out procedure for extracting DNA from human nucleated cells. Nucl Acids Res 1988;16(3):1215.
24. Schwartz DWM, Jungl EM, Krenek OR, Mayr WR. Simple and rapid typing for VNTR polymorphisms using high resolution electrophoresis of PCR products on rehydratable polyacrylamide gels. Advances in Forensic Haemogenetics 1994;5:170-72.
25. Sambrook J, Fritsch EF, Maniatis T, editors Molecular cloning: a laboratory manual. 2nd ed. Isolation of DNA fragments from polyacrylamide gels. Cold Spring Harbor Laboratory Press, 1989; 6.46-6.48.
26. Hultman T, Stahl S, Homes E, Uhlen M. Direct solid phase sequencing of genomic and plasmid DNA using magnetic beads as solid support. Nucl Acids Res 1989;17(13):4937-46.
27. DNA recommendations-1992 report concerning recommendations of the DNA Commission of die International Society for Forensic Haemogenetics relating to the use of PCR-based polymorphisms. Int J Leg Med 1992;105(1):63-64.