Nonautonomous inverted repeat Alien transposable elements are associated with genes of both monocotyledonous and dicotyledonous plants

Gene

Volumn 171, Issue 2, 1996, Pages 147-153

  Pozueta Romero, Javier ^a   Houlné, Guy ^a   Schantz, Rodolphe ^a  

^a INST DE BIOL MOLEC DES PLANTES   (France)

Author keywords

Capsicum annuum; Class II patatin encoding genes; Genomes; Transposons; Yeast

Indexed keywords

PRIMER DNA; REPETITIVE DNA;

ARTICLE; CONSENSUS SEQUENCE; DNA SEQUENCE; NONHUMAN; PLANT; POLYMERASE CHAIN REACTION; PRIORITY JOURNAL; TRANSPOSON;

EID: 0029994758     PISSN: 03781119     EISSN: None     Source Type: Journal    
DOI: 10.1016/0378-1119(96)00007-8     Document Type: Article

References (28)

1. Baumruker, T., Gehe, C. and Horak, I.: Insertion of a retrotransposon within 3′ end of a mouse gene provides a new functional polyadenylation signal. Nucleic Acids Res. 16 (1988) 7241-7251.
2. Bureau, T.E. and Wessler, S.R.: Tourist: a large family of small inverted repeat elements frequently associated with maize genes. Plant Cell 4 (1992) 1283-1294.
3. Bureau, T.E. and Wessler, S.R.: Mobile inverted-repeat elements of the Tourist family are associated with the genes of many cereal grasses. Proc. Natl. Acad. Sci. USA 91 (1994a) 1411-1415.
4. Bureau, T.E. and Wessler, S.R.: Stowaway: a new family of inverted repeat elements associated with the genes of both monocotyledonous and dicotyledonous plants. Plant Cell 6 (1994b) 907-916.
5. Cameron, J.R., Loh, E.Y. and Davis, R.W.: Evidence for transposition of dispersed repetitive DNA families in yeast. Cell 16 (1979) 739-751.
6. Fedoroff, N.V.: About maize transposable elements and development. Cell 56 (1989) 181-191.
7. Gerats, A.G.M., Huits, H., Vrijlandt, E., Maraña, C., Souer, E. and Beld, M.: Molecular characterization of a nonautonomous transposable element (dTph1) of petunia. Plant Cell 2 (1990) 1121-1128.
8. Gierl, A., Lütticke, S. and Saedler, H.: TnpA product encoded by the transposable element En-1 of Zea mays is a DNA binding protein. EMBO J. 7 (1988) 4045-4053.
9. Goodchild, N.L., Wilkinson, D.A. and Mager, D.L.: A human endogenous long terminal repeat provides a polyadenylation signal to a novel, alternatively spliced transcript in normal placenta. Gene 121 (1992) 287-294.
10. Grandbastien, M.-A., Spielmann, A. and Caboche, M.: Tnt1, a mobile retroviral-like transposable element of tobacco isolated by plant cell genetics. Nature 337 (1989) 376-380.
11. Herrmann, A., Schulz, W. and Hahlbrock, K.: Two alleles of the single-copy chalcone synthase gene in parsley differ by a transposon-like element. Mol. Gen. Genet. 212 (1988) 93-98.
12. Hishinuma, F. and Hirai, K.: Genome organization of the linear plasmid, pSKL, isolated from Saccharomyces kluyveri. Mol. Gen. Genet. 226 (1991) 97-106.
13. Joseph, J.L., Sentry, J.W. and Smyth, D.R.: Interspecies distribution of abundant DNA sequences in Lilium. J. Mol. Evol. 30 (1990) 146-154.
14. Köster-Töpfer, M., Frommer, W.B., Rocha-Sosa, M. and Rosahl, S.: A class II patatin promoter is under developmental control in both transgenic potato and tobacco plants. Mol. Gen. Genet. 219 (1989) 390-396.
15. Köster-Töpfer, M., Frommer, W.B., Rocha-Sosa, M. and Willmitzer, L.: Presence of a transposon-like element in the promoter region of an inactive patatin gene in Solanum tuberosum L. Plant Mol. Biol. 14 (1990) 239-247.
16. Kunze, R. and Starlinger, P.: The putative transposase of transposable element Ac from Zea mays L. interacts with subterminal sequences of Ac. EMBO J. 8 (1989) 3177-3185.
17. Laten, H.M. and Morris, R.O.: SIRE-1, a long interspersed repetitive DNA element from soybean with weak sequence similarity to retrotransposons: initial characterization and partial sequence. Gene 134 (1993) 153-159.
18. Leeton, P.R.J. and Smyth, D.R.: An abundant LINE-like element amplified in the genome of Lilium speciosum. Mol. Gen. Genet. 237 (1993) 97-104.
19. Lelievre, J.-M., Oliveira, L.O. and Nielsen, N.C.: 5′-CATGCAT-3′ elements modulate the expression of glycinin genes. Plant Physiol. 98 (1992) 387-391.
20. Liu, X.-Y., Rocha-Sosa, M., Hummel, S., Willmitzer, L. and Frommer, W.B.: A detailed study of the regulation and evolution of the two classes of patatin genes in Solanum tuberosum L. Plant Mol. Biol. 17 (1991) 1139-1154.
21. Nap, J.P., Dirkse, W.G., Louwerse, J., Onstenk, J., Visser, R., Loonen, A., Heidekamp, F. and Stiekema, W.J.: Analysis of the region in between two closely linked patatin genes: class II promoter activity in tuber, root and leaf. Plant Mol. Biol. 20 (1992) 683-694.
22. Peleman, J., Cottyn, B., Van Camp, W., Van Montagu, M. and Inzé, D.: Transient occurrence of extrachromosomal DNA of an Arabidopsis thaliana transposon-like element, Tat1. Proc. Natl. Acad. Sci. USA 88 (1991) 3618-3622.
23. Pikaard, C.S., Mignery, G.A., Ma, D.P., Stark, V.J. and Park, W.D.: Sequence of two apparent pseudogenes of the major potato tuber protein, patatin. Nucleic Acids Res. (1986) 5564-5566.
24. Pozueta-Romero, J., Klein, M., Houlné, G., Schantz, M.-L., Meyer, B. and Schantz, R.: Characterization of a family of genes encoding a fruit-specific wound stimulated protein of bell pepper (Capsicum annuum): identification of a new family of transposable elements. Plant Mol. Biol. (1995) 1011-1025.
25. Schwarz-Sommer, Z., Leclercq, L., Göbel, E. and Saedler, H.: Cin4, an insert altering the structure of the Al gene in Zea mays, exhibits properties of non viral retrotransposons. EMBO J. 6 (1987) 3873-3880.
26. Tebbutt, S.J. and Lonsdale, D.M.: Identification of a defective transposable element in tobacco. Plant Mol. Biol. 23 (1993) 397-400.
27. Wang, H., Qi, M. and Cutler, A.J.: A simple method of preparing plant samples for PCR. Nucleic Acids Res. 21 (1993) 4153-4154.
28. Weil, C. F. and Wessler, S. R.: The effects of plant transposable element insertion on transcription initiation and RNA processing. In: Briggs, W.R., Jones, R.L. and Walbot, V. (Eds.), Annu. Rev. Plant Physiol. Plant Mol. Biol. Annual Reviews Inc., Palo Alto, CA, 1990, pp. 527-552.