Phage display shot-gun cloning of ligand-binding domains of prokaryotic receptors approaches 100% correct clones

BioTechniques

Volumn 20, Issue 6, 1996, Pages 1070-1081

  Jacobsson, Karin ^a   Frykberg, Lars ^a,b  

^a SWEDISH UNIVERSITY OF AGRICULTURAL SCIENCES   (Sweden)

^b Box 7025 ^*  (Sweden)

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; BACTERIOPHAGE; BINDING AFFINITY; DNA PROBE; LIGAND BINDING; MOLECULAR CLONING; PROKARYOTE; PROTEIN DOMAIN; RECEPTOR GENE;

BACTERIA (MICROORGANISMS); PROKARYOTA; STAPHYLOCOCCUS AUREUS;

EID: 0029989081     PISSN: 07366205     EISSN: None     Source Type: Journal    
DOI: 10.2144/96206rr04     Document Type: Article

References (34)

1. Atkins, J.F., R.B. Weissand R.F. Gesteland. 1990. Ribosome gymnastics degree of difficulty 9.5, style 10. Cell 62:413-423.
2. Barbas, C.F., A.S. Kang, R.A. Lerner and S.J. Benkovic. 1991. Assembly of combinatorial antibody libraries on phage surface: the gene III site. Proc. Natl. Acad. Sci. USA 85:7978-7982.
3. Bass, S., R. Greene and J.A. Wells. 1990 Hormone phage: an enrichment method for variant proteins with altered binding properties. Proteins 8:309-314.
4. Bodén, M.K. and J.-I. Flock. 1994. Cloning and characterization of a gene for a 19 kDa fibrinogen-binding protein from Staphylococcus aureus. Mol. Microbiol. 12:599-606.
5. Boyle, M.D.P. 1990. The type 1 immunoglobulin-binding protein: staphylococcal protein A, p 17-28. In M.D.P. Boyle (Ed.), Bacterial Immunoglobulin-Binding Proteins, Vol. 1. Academic Press, San Diego, CA.
6. Clackson, T., H.R. Hoogenboom, A.D. Griffiths and G. Winter. 1991. Making antibody fragments using phage display libraries. Nature 352:624-628.
7. Cortese, R., P. Monaci, N. Nicosia, A. Luzzago, F. Felici, G. Galfré, A. Pessi, A. Tramontano and M. Sollazzo. 1995. Identification of biologically active peptides using random libraries displayed on phage. Curr. Opin. Biotechnol. 6:73-80.
8. Crameri, R., R. Jaussi, G. Menz and K. Blaser. 1994. Display of expression products of cDNA libraries on phage surfaces. A versatile screening system for selective isolation of genes by specific gene- product/ligand interaction. Eur. J. Biochem. 226:53-58.
9. Crameri, R. and M. Suter. 1993. Display of biologically active proteins on the surface of filamentous phages: a cDNA cloning system for selection of functional gene products linked to the genetic information responsible for their production. Gene 137:69-75.
10. Cwirla, S.E., E.A. Peters, R.W. Barrett and W.J. Dower. 1990. Peptides on phage: a vast library of peptides for identifying ligands. Proc. Natl. Acad. Sci. USA 37:6378-6382.
11. Devlin, J.J., L.C. Panganiban and P.E. Devlin. 1990. Random peptide libraries: a source of specific binding molecules. Science 249:404-406.
12. di Marzo Veronese, F., A.E. Willis, C. Boyer-Thompson, E. Appella and R.N. Perham. 1994. Structural mimicry and enhanced immunogenicity of peptide epitopes displayed on filamentous bacteriophage. The V3 loop of HIV-1 gp 120. J. Mol. Biol. 243:167-172.
13. Felici, F., L. Castagnoli, A. Musacchio, R. Jappelli and G. Cesareni. 1991. Selection of antibody ligands from a large library of oligopeptides expressed on a multivalent exposition vector. J. Mol. Biol. 222:301-310.
14. Forsgren, A. and J. Sjöquist. 1966. "Protein A" from S. aureus. I. Pseudo-immune reaction with human γ-globulin. J. Immunol. 97:822-827.
15. Hawiger, J.S., S. Timmons, D.D. Strong, B.A. Cottrell, M. Riley and R.F. Doolittle. 1982. Identification of a region of human fibrinogen interacting with staphylococcal clumping factor. Biochemistry 27:1407-1413.
16. Hoess, R. 1993. Phage display of peptides and protein domains. Curr. Opin. Struct. Biol. 3:572-579.
17. Hoogenboom, H.R., A.D. Griffiths, K.S. Johnson, D.J. Chiswell, P. Hudson and G. Winter. 1991. Multi-subunit proteins on the surface of filamentous phage: methodologies for displaying antibody (Fab) heavy and light chains. Nucleic Acids Res. 19:4133-4137.
18. Jacobsson, K. and L. Frykberg. 1995. Cloning of ligand-binding domains of bacterial receptors by phage display. BioTechniques 18:878-885
19. Jönsson, K. 1992. Ph.D Thesis. Fibronectin-binding proteins of Staphylococcus aureus. Swedish University of Agricultural Sciences, Uppsala Sweden. Dissertation Series Rapport-52.
20. Jönsson, K., C. Signas, H.-P. Müller and M. Lindberg. 1991. Two diffferent genes encode fibronectin binding proteins in Staphylococcus aureus. The complete nucleotide sequence and characterization of the second gene. Eur. J. Biochem. 292:1041-1048.
21. Kang, A.S., C.F. Barbas, K.D. Janda, S.J. Benkovik and R.A. Lerner. 1991. Linkage of recognition and replication functions by assembling combinatorial antibody Fab libraries along phage surfaces. Proc. Natl. Acad. Sci. USA 88:4363-4366.
22. 1 integrin from phage display library. J. Biol. Chem. 268:20205-20210.
23. Löfdahl, S., B. Guss, M. Uhlén, M. Philipson and M. Lindberg. 1983. Gene for staphylococcal protein A. Proc. Natl. Acad. Sci. USA 80:697-701.
24. McCafferty, J., A.D. Griffiths, G. Winter and D.J. Chiswell. 1990. Phage antibodies: filamentous phage displaying antibody variable domains. Nature 348:552-554.
25. McDevitt, D., P. Francois, P. Vaudaux and TJ. Foster. 1994. Molecular characterization of the clumping factor (fibrinogen receptor) of Staphylococcus aureus. Mol. Microbiol. 11:237-248.
26. Parker, J. 1989. Errors and alternatives in reading of the universal genetic code. Microbiol. Rev. 53:273-298.
27. Phonimdaeng, M. O'Reilly, P. Nowlan, A.J. Bramley and T.J. Foster. 1990. The coagulase of Staphylococcus aureus 8325-4. Sequence analysis and virulence of site-specific coagulase-deficient mutants. Mol. Microbiol. 4:393-404.
28. Sambrook, J., E.F. Fritsch and T. Maniatis. 1989. Molecular Cloning: A Laboratory Manual, 2nd ed. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.
29. Scott, J.K. and G.P. Smith. 1990. Searching for peptide ligands with an epitope library. Science 249:386-390.
30. Signäs, C., G. Raucci, K. Jönsson, P.-E. Lindgren, G.M. Anantharamaiah, M. Höök and M. Lindberg. 1989. Nucleotide sequence of the gene for a fibronectin-binding protein from Staphylococcus aureus: use of the peptide sequence in the synthesis of biologically active peptides. Proc. Natl. Acad. Sci. USA 86:699-703.
31. Smith, G.P. 1985. Filamentous fusion phage: novel expression vectors that display cloned antigens on the viron surface. Science 228:1315-1317.
32. Spanjaard, R.A. and J. van Duin. 1988. Translation of the sequence AGG-AGG yields 50% ribosomal frameshift. Proc. Natl. Acad. Sci. USA 85:7967-7971.
33. Stephen C.W. and D.P. Lane. 1992. Mutant conformation of p53, precise epitope mapping using a filamentous phage epitope library. J. Mol. Biol. 225:577-583.
34. Uhlén, M., B. Guss, B. Nilsson, S. Gatenbeck, L. Philipson and M. Lindberg. 1984. Complete sequence of the staphylococcal gene encoding protein A, a gene evolved through multiple duplications. J. Biol. Chem. 259:1695-1702.