A group I plant intron accumulates as circular RNA forms with extensive 5' deletions in vivo

RNA

Volumn 2, Issue 9, 1996, Pages 928-936

  Daròs, José A ^a   Flores, Ricardo ^a  

^a Ciudad Politécnica de la Innovación   (Spain)

Author keywords

Annona cherimola; group I intron; small circular RNAs

Indexed keywords

COMPLEMENTARY DNA; LEUCINE TRANSFER RNA; PLANT RNA; TRINUCLEOTIDE;

ARTICLE; CYCLIZATION; GENE DELETION; INTRON; NONHUMAN; PLANT; PRIORITY JOURNAL; RNA SEQUENCE;

BASE SEQUENCE; INTRONS; MODELS, MOLECULAR; MOLECULAR SEQUENCE DATA; PLANTS, TOXIC; RNA; RNA, PLANT; RNA, TRANSFER, LEU; SEQUENCE DELETION; TOBACCO;

ANNONA CHERIMOLA; NICOTIANA TABACUM;

EID: 0029987533     PISSN: 13558382     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Article

References (31)

1. Been MD, Cech TR. 1987. Selection of circularization sites in a group I IVS RNA requires multiple alignments of an internal template-like sequence. Cell 50:951-961.
2. Leu intron with the intron from the autosplicable Tetrahymena ribosomal RNA precursor. Mol Gen Genet 194:330-336.
3. Bremhm SL, Cech TR. 1983. Fate of an intervening sequence ribonucleic acid: Excision and cyclization of the Tetrahymena ribosomal ribonucleic acid intervening sequence in vivo. Biochemistry 22:2390-2397.
4. Cech TR. 1990. Self-splicing of Group I introns. Annu Rev Biochem 59:543-568.
5. Cech TR, Damberger SH, Gutell RR. 1994. Representation of the secondary and tertiary structure of group I introns. Nature Struct Biol 1:273-280.
6. Damberger SH, Gutell RR. 1994. A comparative database of group I intron structures. Nucleic Acids Res 22:3508-3510.
7. Davies RW, Waring RB, Ray JA, Brown TA, Scazzocchio C. 1982. Making ends meet: A model for RNA splicing in fungal mitochondria. Nature 300:719-724.
8. Dellaporta SL, Wood J, Hicks JB. 1983. A plant DNA minipreparation: Version II. Plant Mol Biol Rep 1:19-21.
9. Devereux J, Haeberli P, Smithies O. 1984. A comprehensive set of sequence analysis programs for the VAX. Nucleic Acids Res 12:387-395.
10. Flores R. 1986. Detection of citrus exocortis viroid in crude extracts by dot-blot hybridization: Conditions for reducing spurious hybridization results and for enhancing the sensitivity of the technique. J Virol Methods 13:161-169.
11. Flores R, Durán-Vila N, Pallás V. Semancik JS. 1985. Detection of viroid and viroid-like RNAs from grapevine. J Gen Virol 66:2095-2102.
12. Inoue T, Sullivan FX, Cech TR. 1986. New reactions of the ribosomal RNA precursor of Tetrahymena and the mechanism of self-splicing. J Mol Biol 189:143-165.
13. Kuhsel MG, Strickland R, Palmer JD. 1990. An ancient group I intron shared by eubacteria and chloroplasts. Science 250:1570-1573.
14. Michel F, Dujon B. 1983. Conservation of RNA secondary structures in two intron families including mitochondrial-, chloroplast-, and nuclear-encoded members. EMBO J 2:33-38.
15. Michel F, Westhof E. 1990. Modelling of the three-dimensional architecture of group I catalytic introns based on comparative sequence analysis. J Mol Biol 216:585-610.
16. Navarro B, Daròs JA, Flores R. 1996. A general strategy for cloning viroids and other small circular RNAs that uses minimal amounts of template and does not require prior knowledge of its sequence. J Virol Methods 56:59-66.
17. Pallás V, Navarro A, Flores R. 1987. Isolation of a viroid-like RNA from hop different from hop stunt viroid. J Gen Virol 68:3201-3205.
18. Rochaix JD. 1992. Post-transcriptional steps in the expression of chloroplast genes. Annu Rev Cell Biol 8:1-28.
19. Roman J, Woodson SA. 1995. Reverse splicing of the Tetrahymena IVS: Evidence for multiple reaction sites in the 23S rRNA. RNA 1:478-490.
20. Sanger F, Nicklen S, Coulson AR. 1977. DNA sequencing with chain terminating inhibitors. Proc Natl Acad Sci USA 74:5463-5467.
21. Schumacher J, Randles JW, Riesner D. 1983. A two-dimensional electrophoretic technique for the detection of circular viroids and virusoids. Anal Biochem 135:288-295.
22. LeuUAA is split by a large intron. Nucleic Acids Res 10:3027-3037.
23. Sullivan FX, Cech TR. 1985. Reversibility of cyclization of the Tetrahymena rRNA intervening sequence: Implication for the mechanism of splice site choice. Cell 42:639-648.
24. Tabak HF, Van der Horst G, Kamps AMJE, Arnberg AC. 1987. Interlocked RNA circle formation by a self-splicing yeast mitochondrial group I intron. Cell 48:101-110.
25. Thompson AJ, Herrin DL. 1991. In vitro self-splicing reactions of the chloroplast group I intron Cr.LSU from Chlamydomonas reinhardtii and in vivo manipulation via gene-replacement. Nucleic Acids Res 19:6611-6618.
26. Vaughn JC, Mason MT, Sper-Whitis GL, Kuhlman P, Palmer JD. 1995. Fungal origin by horizontal transfer of a plant mitochondrial group I intron in the chimeric CoxI gene of Peperonia. J Mol Evol 41:563-572.
27. Woodson SA, Cech T. 1989. Reverse self-splicing of the Tetrahymena group I intron: Implication for the directionality of splicing and for intron transposition. Cell 57:335-345.
28. Xu MQ, Kathe SD, Goodrich-Blair H, Nierzwicki-Bauer SA, Shub DA. 1990. Bacterial origin of a chloroplast intron: Conserved self-splicing group I introns in Cyanobacteria. Science 250:1568-1570.
29. Leu gene contains a 503 bp intron. Plant Mol Biol 6:193-199.
30. Zaug AJ, Grabowski PJ, Cech T. 1983. Autocatalytic cyclization of an excised intervening sequence RNA is a cleavage-ligation reaction. Nature 302:578-583.
31. Zaug AJ, Kent JR, Cech T. 1985. Reactions of the intervening sequence of the Tetrahymena ribosomal ribonucleic acid precursor: pH dependence of cyclization and site-specific hydrolysis. Biochemistry 24:6211-6218.