The effects of sequence context on DNA curvature

Proceedings of the National Academy of Sciences of the United States of America

Volumn 93, Issue 9, 1996, Pages 3847-3852

  Dlakić, Mensur ^a   Harrington, Rodney E ^a  

^a UNIVERSITY OF NEVADA   (United States)

Author keywords

A tract curvature; chemical probing; DNA cyclization; DNA flexibility; nucleosome positioning

Indexed keywords

CURVED DNA; POLYADENYLIC ACID;

ARTICLE; CYCLIZATION; DNA CONFORMATION; DNA SEQUENCE; NUCLEOSOME; PRIORITY JOURNAL; SEQUENCE ANALYSIS;

BASE COMPOSITION; BASE SEQUENCE; DNA; ELECTROPHORESIS, POLYACRYLAMIDE GEL; MOLECULAR SEQUENCE DATA; NUCLEIC ACID CONFORMATION; OLIGODEOXYRIBONUCLEOTIDES; REPETITIVE SEQUENCES, NUCLEIC ACID;

EID: 0029981193     PISSN: 00278424     EISSN: None     Source Type: Journal    
DOI: 10.1073/pnas.93.9.3847     Document Type: Article

References (42)

1. Trifonov, E. N. & Sussman, J. L. (1980) Proc. Natl. Acad. Sci. USA 77, 3816-3820.
2. Drew, H. R., Wing, R. M., Takano, T., Broka, C., Tanaka, S., Itakura, K. & Dickerson, R. E. (1981) Proc. Natl. Acad. Sci. USA 78, 2179-2183.
3. Marini, J. C., Levene, S. D., Crothers, D. M. & Englund, P. T. (1982) Proc. Natl. Acad. Sci. USA 79, 7664-7668.
4. Travers, A. A. (1989) Annu. Rev. Biochem. 58, 427-452.
5. Hagerman, P. J. (1990) Annu. Rev. Biochem. 59, 755-781.
6. Harrington, R. E. (1992) Mol. Microbiol. 6, 2549-2555.
7. Harrington, R. E. & Winicov, I. (1994) Prog. Nucleic Acids Res. Mol. Biol. 47, 195-270.
8. Ulanovsky, L. E. & Trifonov, E. N. (1987) Nature (London) 326, 720-722
9. Koo, H.-S. & Crothers, D. M. (1988) Proc. Natl. Acad. Sci. USA 85, 1763-1767.
10. Calladine, C. R., Drew, H. R. & McCall, M. J. (1988) J. Mol. Biol. 201, 127-137.
11. De Santis, P., Palleschi, A., Savino, M. & Scipioni, A. (1990) Biochemistry 29, 9269-9273.
12. Bolshoy A., McNamara, P. T., Harrington, R. E. & Trifonov, E. N. (1991) Proc. Natl. Acad. Sci. USA 88, 2312-2316.
13. Brukner, I., Susic, S., Dlakic, M., Savic, A. & Pongor, S. (1994) J. Mol. Biol. 236, 26-32.
14. Goodsell, D. S. & Dickerson, R. E. (1994) Nucleic Acids Res. 22, 5497-5503.
15. Dlakic, M. & Harrington, R. E. (1995) J. Biol. Chem. 270, 29945-29952.
16. Brukner, I., Sanchez, R., Suck, D. & Pongor, S. (1995) EMBO J. 14, 1812-1818.
17. Dlakic, M. & Harrington, R. E. (1995) Biophys. J. 68, A101 (abstr.).
18. Goodsell, D. S., Kaczor-Grzeskowiak, M. & Dickerson, R. E. (1994) J. Mol. Biol. 239, 79-96.
19. Satchwell, S., Drew, H. R. & Travers, A. A. (1986) J. Mol. Biol. 191, 659-675.
20. Nelson, H. C M., Finch, J. T., Luisi, B. F. & Klug, A. (1987) Nature (London) 330, 221-226.
21. Maroun, R. C. & Olson, W. K. (1988) Biopolymers 27, 585-603.
22. Ulanovsky, L., Bodner, M., Trifonov, E. N. & Choder, M. (1986) Proc. Natl. Acad. Sci. USA 83, 862-866.
23. Lyuhchenko, Y. L., Shlyakhtenko, L. S., Chernov, B. & Harrington, R. E. (1991) Proc. Natl. Acad. Sci. USA 88, 5331-5334.
24. Tullius, T. D. & Dombroski, B. A. (1986) Proc. Natl. Acad. Sci. USA 83, 5469-5473.
25. McCarthy, J. G., Williams, L. D. & Rich, A. (1990) Biochemistry 29, 6071-6081.
26. Brukner, I., Dlakic, M., Savic, A., Susic, S., Pongor, S. & Suck, D. (1993) Nucleic Acids Res. 21, 1025-1029.
27. Shrader, T. E. & Crothers, D. M. (1989) Proc. Natl. Acad. Sci. USA 86, 7418-7422.
28. Diekmann, S. (1986) Nucleic Acids Res. 15, 247-265.
29. Harrington, R. E. (1993) Electrophoresis 14, 732-746.
30. Koo, H.-S., Drak, J., Rice, J. A. & Crothers, D. M. (1990) Biochemistry 29, 4227-4234.
31. Crothers, D. M., Drak, J., Kahn, J. D. & Levene, S. D. (1992) Methods Enzymol. 212, 3-29.
32. Drew, H. R. & Travers, A. A. (1985) J. Mol. Biol. 186, 733-790.
33. Haran, T. E., Kahn, J. D. & Crothers, D. M. (1994) J. Mol. Biol. 244, 135-143. 34.
34. Lilley, D. M. J. (1992) Methods Enzymol. 212, 133-139.
35. Weston, S. A., Lahm, A. & Suck, D. (1992) J. Mol. Biol. 226, 1237-1256.
36. Drew, H. R. & Travers, A. A. (1984) Cell 37, 491-502.
37. Zhurkin, V. B., Gorin, A. A., Charakhchyan, A. A. & Ulyanov, N. B. (1990) in Theoretical Biochemistry and Molecular Biophysics, eds. Beveridge, D. L. & Lavery, R. (Adenine, Schenectady, NY), pp. 409-429.
38. Burkhoff, A. M. & Tullius, T. D. (1987) Cell 48, 935-943.
39. Shlyakhtenko, L. S., Lyubchenko, Y. L., Chernov, B. & Zhurkin, V. B. (1990) Mol. Biol. (Engl. transl.) 24, 79-95.
40. Kahn, J. D., Yun, E. & Crothers, D. M. (1994) Nature (London) 368, 163-166.
41. Crothers, D. M., Haran, T. E. & Nadeau, J. G. (1990) J. Biol. Chem. 265, 7093-7096.
42. Travers, A. A. & Klug, A. (1987) Philos. Trans. R. Soc. London B 317, 537-561.