Sequencing of a 17·6 kb segment on the right arm of yeast chromosome VII reveals 12 ORFs, including CCT, ADE3 and TR-I genes, homologues of the yeast PMT and EF1G genes, of the human and bacterial electron-transferring flavoproteins (β-chain) and of the Escherichia coli phosphoserine phosphohydrolase, and five new ORFs

Yeast

Volumn 12, Issue 3, 1996, Pages 273-280

  Guerreiro, Paulo ^a   Barreiros, Tania ^a   Soares, Helena ^a   Cyrne, Luisa ^b   Maia E Silva, Alexandra ^a   Rodrigues Pousada, Claudina ^a  

^a INSTITUTO GULBENKIAN DE CIÊNCIA   (Portugal)

^b UNIVERSITY OF LISBON   (Portugal)

Author keywords

ADE3; CCT; Chromosome sequencing; Chromosome VII; EF19; PMT; Saccharomyces cerevisiae; TR 1

Indexed keywords

BACTERIA (MICROORGANISMS); ESCHERICHIA COLI; PARACOCCUS DENITRIFICANS; SACCHAROMYCES CEREVISIAE; ESCHERICHIA;

FLAVOPROTEIN; PHOSPHOSERINE PHOSPHATASE; UNCLASSIFIED DRUG;

ARTICLE; CHROMOSOME 7; CONTROLLED STUDY; DNA SEQUENCE; ESCHERICHIA COLI; NONHUMAN; OPEN READING FRAME; PRIORITY JOURNAL; SACCHAROMYCES CEREVISIAE;

AMINO ACID SEQUENCE; BASE SEQUENCE; CHROMOSOMES, FUNGAL; ESCHERICHIA COLI; GENES, FUNGAL; HUMANS; MOLECULAR SEQUENCE DATA; OPEN READING FRAMES; PHOSPHORIC MONOESTER HYDROLASES; SACCHAROMYCES CEREVISIAE; SEQUENCE HOMOLOGY, NUCLEIC ACID;

EID: 0029980759     PISSN: 0749503X     EISSN: None     Source Type: Journal    
DOI: 10.1002/(sici)1097-0061(19960315)12:3<273::aid-yea898>3.0.co;2-1     Document Type: Article

References (23)

1. Arakawa, H., Takiguchi, M., Amaya, Y., Nagata, S., Hayashi, H. and Mori, M. (1987). cDNA-derived amino acid sequence of rat mitochondrial 3-oxoacyl-CoA thiolase with no transient presequence: structural relationship with peroxisomal isozyme. EMBO J. 6, 1361-1366.
2. Bedzyk, L. A., Escudero, K. W., Gill, R. E., Griffin, K. J. and Frerman, F. E. (1993). Cloning, sequencing, and expression of the genes encoding subunits of Paracoccus denitrificans electron transfer flavoprotein. J. Biol. Chem. 268, 20211-20217.
3. Finocchiaro, G., Colombo, I., Garavaglia, B., et al. (1993). cDNA cloning and mitochondrial import of the β-subunit of the human electron-transfer flavo-protein. Eur. J. Biochem. 213, 1003-1008.
4. Fondrat, C. and Kalogeropoulos, A. (1994). Approaching the function of new genes by detection of their potential upstream activation sequences in Saccharomyces cerevisiae: application to chromosome III. Curr. Genet. 25, 396-406.
5. Gan, Z.-R. (1991). Yeast thioredoxin genes. J. Biol. Chem. 266, 1692-1696.
6. Gentzsch, M., Immervoll, T., Strahl-Bolsinger, S. and Tanner, W. (1995). O-Glycosylation in Saccharomyces cerevisiae. Yeast 11, S433.
7. Guerreiro, P., Maia e Silva, A., Barreiros, T., et al. (1995). The complete sequence of a 9000 bp fragment of the right arm of Saccharomyces cerevisiae chromosome VII contains four previously unknown open reading frames. Yeast 11, 1087-1091.
8. Holmgren, A. (1985). Thioredoxin. Ann. Rev. Biochem. 54, 237-271.
9. Janssen, G. M. C. and Moller, W. (1988). Elongation factor 1βγ from Artemia. Purification and properties of its subunits. Eur. J. Biochem. 171, 119-129.
10. Kinzy, T. G., Ripmaster, T. L. and Woolford Jr, J. L. (1994). Multiple genes encode the translation elongation factor EF-1γ in Saccharomyces cerevisiae. Nucl. Acids Res. 22, 2703-2707.
11. Klein, P., Kanehisa, M. and Delisi, C. (1985). The detection and classification of membrane-spanning proteins. Biochem. Biophys. Acta 815, 468-476.
12. Kyte, J. and Doolittle, R. F. (1982). A simple method for displaying the hydropathic character of a protein. J. Mol. Biol. 157, 105-132.
13. Lussier, M., Gentzsch, M., Sdicu, A.-M., Bussey, H. and Tanner, W. (1995). Protein O-glycosylation in yeast. J. Biol. Chem. 270, 2770-2775.
14. Moldave, K. (1985). Eukaryotic protein synthesis. Ann. Rev. Biochem. 54, 1109-1149.
15. Neuwald, A. F. and Stauffer, G. V. (1985). DNA sequence and characterization of the Escherichia coli serB gene. Nucl Acids Res. 13, 7025-7039.
16. Oullette, B. F. F., Clark, M. W., Keng, T., et al. (1993). Sequencing of chromosome I from Saccharomyces cerevisiae: analysis of a 32kb region between the LTE1 and SPO7 genes. Genome 36, 32-42.
17. Pearson, W. R. and Lipman, D. J. (1988). Improved tools for biological sequence comparison. Proc. Natl. Acad Sci. USA 85, 2444-2448.
18. Sambrook, J., Fritsch, E. F. and Maniatis, T. (1989). Molecular Cloning, 2nd edn. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.
19. Saraste, M., Sibbald, P R. and Wittinghofer, A. (1990). The P-loop - a common motif in ATP- and GTP-binding proteins. Trends Biochem. Sci. 15, 430-434.
20. Sharp, P. M. and Li, W.-H. (1987). The codon adaptation index - a measure of directional synonymous codon usage bias, and its potential applications. Nucl. Acids Res. 15, 1281-1295.
21. 1-tetrahydrofolate synthase. J. Biol. Chem. 261, 4629-4637.
22. Strahl-Bolsinger, S., Immervoll, T., Deutzmann, R. and Tanner, W. (1993). PMT1, the gene for a key enzyme of protein O-glycosylation in Saccharomyces cerevisiae. Proc. Natl. Acad. Sci. USA 90, 8164-8168.
23. Tsukagoshi, Y., Nakawa, J. I. and Yamashita, S. (1987). Molecular cloning and characterization of the gene encoding cholinephosphate cytidylyltransferase in Saccharomyces. Eur. J. Biochem. 169, 477-486.