Globin gene switching: In vivo protein-DNA interactions of the human β-globin locus in erythroid cells expressing the fetal or the adult globin gene program

Journal of Biological Chemistry

Volumn 271, Issue 24, 1996, Pages 14082-14091

  Ikuta, Tohru ^a,d   Papayannopoulou, Thalia ^c   Stamatoyannopoulos, George ^c   Kan, Yuet Wai ^a,b,e  

^a UNIVERSITY OF CALIFORNIA   (United States)

^b UNIVERSITY OF CALIFORNIA   (United States)

^c UNIVERSITY OF WASHINGTON SCHOOL OF MEDICINE   (United States)

^d BOSTON UNIVERSITY SCHOOL OF MEDICINE   (United States)

^e HOWARD HUGHES MEDICAL INSTITUTE   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

BETA GLOBIN; DIMETHYL SULFATE; DNA FRAGMENT; MESSENGER RNA; TRANSCRIPTION FACTOR;

ANIMAL CELL; ARTICLE; AUTORADIOGRAPHY; CELL CULTURE; CONTROLLED STUDY; DNA FOOTPRINTING; DNA METHYLATION; DNA SEQUENCE; ERYTHROID CELL; GENE EXPRESSION; GENE LOCUS; GENE SWITCHING; HUMAN; HUMAN CELL; HYBRID CELL; MOUSE; NONHUMAN; POLYMERASE CHAIN REACTION; PRIORITY JOURNAL; PROMOTER REGION; PROTEIN DNA INTERACTION; RNA ANALYSIS;

ADULT; BASE SEQUENCE; BINDING SITES; CELL LINE; DNA FOOTPRINTING; DNA PRIMERS; DNA-BINDING PROTEINS; ERYTHROCYTES; ERYTHROID-SPECIFIC DNA-BINDING FACTORS; FETAL HEMOGLOBIN; FETUS; GATA1 TRANSCRIPTION FACTOR; GLOBINS; HEMOGLOBIN A; HUMANS; HYBRID CELLS; MOLECULAR SEQUENCE DATA; NF-E2 TRANSCRIPTION FACTOR; NF-E2 TRANSCRIPTION FACTOR, P45 SUBUNIT; POLYMERASE CHAIN REACTION; REGULATORY SEQUENCES, NUCLEIC ACID; REPETITIVE SEQUENCES, NUCLEIC ACID; TRANSCRIPTION FACTOR AP-1; TRANSCRIPTION FACTORS; TRANSCRIPTION, GENETIC; ZINC FINGERS;

EID: 0029975625     PISSN: 00219258     EISSN: None     Source Type: Journal    
DOI: 10.1074/jbc.271.24.14082     Document Type: Article

References (65)

1. Karlsson, S., and Nienhuis, A. W. (1985) Annu. Rev. Biochem. 54, 1071-1108
2. Stamatoyannopoulos, G., and Nienhuis, A. W. (1987) in The Molecular Basis of Blood Diseases (Stamatoyannopoulos, G., Nienhuis, A. W., Majerus, P., and Vermus, H., eds) pp. 66-105, W. B. Saunders Co., Philadelphia, PA
3. Tuan, D., Solomon, W., Li, Q., and London, I. M. (1985) Proc. Natl. Acad. Sci. U. S. A. 82, 6384-6388
4. Forrester, W. C., Thompson, C., Elder, J. T., and Groudine, M. (1986) Proc. Natl. Acad. Sci. U. S. A. 83, 1359-1363
5. Forrester, W. C., Takegawa, S., Papayannopoulou, T., Stamatoyannopoulos, G., and Groudine, M. (1987) Nucleic Acids Res. 15, 10159-10177
6. Orkin, S. H. (1990) Cell 63, 665-672
7. Grosveld, F., Blom van Assendelt, G., Greaves, D. R., and Kollias, G. (1987) Cell 51, 975-985
8. Orkin, S. H. (1995) Eur. J. Biochem. 231, 271-281
9. Gumucio, D. L., Rood, K. L., Gray, T. A., Riorddan, M. F., Sartor, C. I., and Collins, F. S. (1988) Mol. Cell Biol. 8, 5310-5322
10. Philipsen, S., Talbot, D., Fraser, P., and Grosveld, F. (1990) EMBO J. 9, 2159-2167
11. Talbot, D., Philipsen, S., Fraser, P., and Grosveld, F. (1990) EMBO J. 9, 2169-2177
12. Jane, S. M., Ney, P. A., Vanin, E. F., Gumucio, D. L., and Nienhuis, A. W. (1992) EMBO J. 11, 2961-2969
13. Reddy, P. M. S., and Shen, C.-K. J. (1991) Proc. Natl. Acad. Sci. U. S. A. 88, 8676-8680
14. Ikuta, T., and Kan, Y. W. (1991) Proc. Natl. Acad. Sci. U. S. A. 88, 10188-10192
15. Strauss, E. C., and Orkin, S. H. (1992) Proc. Natl. Acad. Sci. U. S. A. 89, 5809-5813
16. Papayannopoulou, T., Brice, M., and Stamatoyannopoulos, G. (1986) Cell 46, 469-476
17. Bodine, D. M., and Ley, T. J. (1987) EMBO J. 6, 2997-3004
18. Wall, L., deBoer, E., and Grosveld, F. (1988) Genes Dev. 2, 1089-1100
19. Chomczynski, P., and Sacchi, N. (1987) Anal. Biochem. 162, 156-159
20. Sambrook, J., Fritsch, E. F., and Maniatis, T. (1989) Molecular Cloning: A Laboratory Manual, Cold Spring Harbor Laboratory, Cold Spring Harbor, NY
21. Maxam, A. M., and Gilbert, W. (1980) Methods Eruymol. 65, 499-560
22. Mueller, P. R., and Wold, B. (1989) Science 246, 780-786
23. Gilbert, W., Maxam, A., and Mirzabekov, A. (1976) in Control of Ribosome Synthesis (Kjeldgaard, N. O., and Maaloe, O., eds) pp. 139-148, Academic Press, New York
24. Kara, C. J., and Glimcher, L. H. (1991) Science 252, 709-712
25. Lonergan, M., Dey, A., Becker, K. G., Drew, P. D., and Ozato, K. (1993) Mol. Cell. Biol. 13, 6629-6639
26. Raich, N., Enver, T., Nakamoto, B., Josephson, B., Papayannopoulou, T., and Stamatoyannopoulos, G. (1991) Science 260, 1147-1149
27. Bohmann, D., Bos, T. J., Admon, A., Nishimura, T., Vogt, P. K., and Tjian, R. (1987) Science 238, 1386-1392
28. Dierks, P., van Ooyen, A., Cochran, M. D., Dobkin, C., Reiser, J., and Weissman, C. (1983) Cell 32, 695-706
29. Evans, T., Reitman, M., and Felsenfeld, G. (1988) Proc. Natl. Acad. Sci. U. S. A. 85, 5976-5980
30. Reddy, P. M. S., Stamatoyannopoulos, G., Papayannopoulou, T., and Shen, C.-K. J. (1994) J. Biol. Chem. 269, 8287-8295
31. Philipsen, S., Pruzina, S., and Grosveld, F. (1993) EMBO J. 12, 1077-1085
32. Lowrey, C. R., Bodine, D. M., and Nienhuis, A. W. (1992) Proc. Natl. Acad. Sci. U. S. A. 89, 1143-1147
33. Pruzina, S., Hanscombe, O., Whyatt, D., Grosveld, F., and Philipsen, S. (1991) Nucleic Acids Res. 19, 1413-1419
34. Fraser, P., Pruzina, S., Antoniou, M., and Grosveld, F. (1993) Genes Dev. 7, 106-113
35. Forrester, W. C., Epner, E., Driscoll, C., Enver, T., Brice, M., Papayannopoulou, T., and Groudine, M. (1990) Genes Dev. 4, 1637-1649
36. Purucker, M., Bodine, D., Lin, H., McDonagh, K., and Nienhuis, A. W. (1990) Nucleic Acids Res. 18, 7407-7415
37. Trudel, M., and Costantini, F. (1987) Genes Dev. 1, 954-961
38. Wall, L., deBoer, E., and Grosveld, F. (1988) Genes Dev. 2, 1089-1100
39. Antoniou, M., and Grosveld, F. (1990) Genes Dev. 4, 1007-1013
40. deBoer, E., Antoniou, M., Mignotte, V., Wall, L., and Grosveld, F. (1988) EMBO J. 7, 4203-4212
41. McDonagh, K. T., Lin, H. J., Lowrey, C. H., Bodine, D. M., and Nienhuis, A. W. (1991) J. Biol. Chem. 266, 11965-11974
42. Ulrich, M. J., and Ley, T. J. (1990) Blood 75, 990-999
43. O'Neill, D., Kaysen, J., Donovan-Peluso, M., Castle, M., and Bank, A. (1990) Nucleic Acids Res. 18, 1977-1982
44. Orkin, S. H., and Kazazian, H. H., Jr. (1984) Annu. Rev. Genet. 18, 131-154
45. Miller, I. J., and Bieker, J. J. (1993) Mol. Cell. Biol. 13, 2776-2786
46. Donze, D., Townes, T. M., and Bieker, J. J. (1995) J. Biol. Chem. 270, 1955-1959
47. Bieker, J. J., and Southwood, C. M. (1995) Mol. Cell. Biol. 15, 852-860
48. Collis, P., Antoniou, M., and Grosveld, F. (1990) EMBO J. 9, 233-240
49. Fraser, P., Hurst, J., Collis, P., and Grosveld, F. (1990) Nucleic Acids Res. 18, 3503-3507
50. Ryan, T. M., Behringer, R. R., Martin, N. C., Townes, T. M., Palmiter, R. D., and Brinster, R. L. (1989) Genes Dev. 3, 314-323
51. Andrews, N. C., Erdjument-Bromage, H., Davidson, M. B., Tempst, P., and Orkin, S. H. (1993) Nature 362, 722-728
52. Chan, J. Y., Han, X.-L., and Kan, Y. W. (1993) Proc. Natl. Acad. Sci. U. S. A. 90, 11371-11375
53. Moi, P., Chan, K., Asunis, I., Cao, A., and Kan, Y. W. (1994) Proc. Natl. Acad. Sci. U. S. A. 91, 9926-9930
54. Kataoka, K., Igarashi, K., Ito, K., Fujiwara, K. T., Noda, M., Yamamoto, M., and Nishizawa, M. (1995) Mol. Cell. Biol. 15, 2180-2190
55. Kotkow, K. J., and Orkin, S. H. (1995) Mol. Cell. Biol. 15, 4640-4647
56. Shivdasani, R. A.,and Orkin, S. H. (1995) Proc. Natl. Acad. Sci. U. S. A. 92, 8690-8694
57. Fiering, S., Epner, E., Robinson, K., Zhuang, Y., Telling, A., Hu, M., Martin, D. I. K., Enver, T., Ley, T. J., and Groudine, M. (1995) Genes Dev. 9, 2203-2213
58. Miller, J. L., Walsh, C. E., Ney, P. A., Samulski, R. J., and Nienhuis, A. W. (1993) Blood 82, 1900-1906
59. Raich, N., Clegg, C. H., Grofti, J., Romeo, P. H., and Stamatoyannopoulos, G. (1995) EMBO J. 14, 801-809
60. Hug, B. A., Moon, A. M., and Ley, T. J. (1992) Nucleic Acids Res. 20, 5771-5778
61. Cunningham, J. M., Purucker, M. E., Jane, S. M., Safer, S., Vanin, E. F., Ney, P. A., Lowrey, C. H., and Nienhuis, A. W. (1994) Blood 84, 1298-1308
62. Balta, G., Brickner, H. E., Takegawa, S., Kazazian, H. H., Jr., Papayannopoulou, T., Forget, B. G., and Atweh, G. F. (1994) Blood 83, 3727-3737
63. Townes, T. M., Lingrel, J. B, Chen, H. Y., Brinster, R. L., and Palmiter, R. D. (1985) EMBO J. 4, 1715-1723
64. Starck, J., Sarkar, R., Romana, M., Bhargava, A., Scarpa, A. L., Tanaka, M., Chamberlain, J. W., Weisman, S. M., and Forget, B. G. (1994) Blood 84, 1656-1665
65. Peterson, K. R., Clegg, C. H., Navas, P. A., Norton, E. J., Kimbrough, T. G., and Stamatoyannopoulos, G. (1996) Proc. Natl. Acad. Sci. U. S. A., in press