Crystal structures of the human p56lck SH2 domain in complex with two short phosphotyrosyl peptides at 1.0 Å and 1.8 Å resolution

Journal of Molecular Biology

Volumn 256, Issue 3, 1996, Pages 601-610

  Tong, Liang ^a   Warren, Thomas C ^a   King, Josephine ^a   Betageri, Raj ^a   Rose, Janice ^a   Jakes, Scott ^a  

^a BOEHRINGER INGELHEIM PHARMACEUTICALS INC   (United States)

Author keywords

Crystal structure; SH2 domain; Signal transduction; Tyrosine kinase; Tyrosine phosphorylation

Indexed keywords

PEPTIDE; PHOSPHOTYROSINE; PROTEIN TYROSINE KINASE;

ARTICLE; CRYSTAL STRUCTURE; NONHUMAN; PRIORITY JOURNAL; PROTEIN DOMAIN; SEQUENCE HOMOLOGY; SIGNAL TRANSDUCTION;

EID: 0029967679     PISSN: 00222836     EISSN: None     Source Type: Journal    
DOI: 10.1006/jmbi.1996.0112     Document Type: Article

References (33)

1. Bernstein, F. C., Koetzle, T. F., Williams, G. J. B., Meyer, E. F. Jr, Brice, M. D., Rodgers, J. R., Kennard, O., Shimanouchi, T. & Tasumi, M. (1977). The Protein Data Bank: A computer-based archival file for macromolecular structures. J. Mol. Biol. 112, 535-542.
2. Booker, G. W., Breeze, A. L., Downing, A. K., Panayotou, G., Gout, I., Waterfield, M. D. & Campbell, I. D. (1992). Structure of an SH2 domain of the p85α subunit of phosphatidylinositol-3-OH kinase. Nature, 358, 684-687.
3. Brünger, A. T. (1992a). The X-PLOR Manual, version 3.0, Yale University, New Haven, CT.
4. Brünger, A. T. (1992b). Free R value: a novel statistical quantity for assessing the accuracy of crystal structures. Nature, 355, 472-475.
5. Burley S. K. & Petsko, G. A. (1986). Amino-aromatic interactions in proteins. FEBS Letters, 203, 139-143.
6. + . . . π. Complexes of onium ions with olefins and benzene derivatives. J. Am. Chem. Soc. 107, 474-479.
7. lck. Nature, 362, 87-91.
8. lck. Nature, 368, 764-769.
9. Engh, R. A. & Huber, R. (1991). Accurate bond and angle parameters for X-ray protein structure refinement. Acta Crystallog. sect. A, 47, 342-400.
10. Gilmer, T., Rodriguez, M., Jordan, S., Crosby R., Alligood, K., Green, M., Kimery M., Wagner, C., Kinder, D., Charifson, P., Hassell, A. M., Willard, D., Luther, M., Rusnak, D., Sternbach, D. D., Mehrotra, M., Peel, M., Shampine, L., Davis, R., Robbins, J., Patel, I. R., Kassel, D., Burkhart, W., Moyer, M., Bradshaw, T. & Berman, J. (1994). Peptide inhibitors of src SH3-SH2-phosphoprotein interactions. J. Biol. Chem. 269, 31711-31719.
11. Jones, T. A. (1978). A graphics model building and refinement system for macromolecules. J. Appl. Crystallog. 11, 268-272.
12. Lam, P. Y. S., Jadhav, P. K., Eyermann, C. J., Hodge, C. N., Ru, Y, Bacheler, L. T., Meek, J. L., Otto, M. J., Rayner, M. M., Wong, Y. N., Chang, C-H., Weber, P. C., Jackson, D. A., Sharpe, T. R. & Erickson-Viitanen, S. (1994). Rational design of potent, bioavailable, nonpeptide cyclic ureas as HIV protease inhibitors. Science, 263, 380-384.
13. Lee, C. H., Kominos, D., Jacques, S., Margolis, B., Schlessinger, J., Shoelson, S. E. & Kuriyan, J. (1994). Crystal structures of peptide complexes of the amino-terminal SH2 domain of the Syp tyrosine phosphatase. Structure, 2, 423-438.
14. Lowenstein, E. J., Daly R. J., Batzer, A. G., Li, W., Margolis, B., Lammers, R., Ullrich, A., Skolnik, E. Y., Bar-Sagi, D. & Schlessinger, J. (1992). The SH2 and SH3-containing protein Grb2 links receptor tyrosine kinases to ras signaling. Cell, 70, 431-442.
15. Maignan, S., Guilloteau, J.-P., Fromage, N., Arnoux, B., Becquart, J. & Ducruix, A. (1995). Crystal structure of the mammalian Grb2 adaptor. Science, 268, 291-293.
16. Mikol, V., Baumann, G., Keller, T. H., Manning, U. & Zurini, M. G. M. (1995). The crystal structures of the SH2 domain of p561ck complexed with two phosphonopeptides suggest a gated peptide binding site. J. Mol. Biol. 220, 344-355.
17. Morelock, M. M., Ingraham, R. H., Betageri, R. & Jakes, S. (1995). Determination of receptor-ligand kinetic and equilibrium binding constants using surface plasmon resonance: application to the lck SH2 domain and phosphotyrosyl peptides. J. Med. Chem. 38, 1309-1318.
18. Otwinowski, Z. (1993). Oscillation data reduction program. In Data Collection and Processing (Sawyer, L., Isaacs, N. & Bailey, S., eds), pp. 56-62. SERC Daresbury Laboratory England.
19. Overduin, M., Rios, C. B., Mayer, B. J., Baltimore, D. & Cowburn, D. (1992). Three dimensional solution structure of the src homology 2 domain of c-abl. Cell, 70, 697-704.
20. Pascal, S. M., Singer, A. U., Gish, G., Yamazaki, T., Shoelson, S. E., Pawson, T., Kay L. E. & Forman-Kay J. D. (1994). Nuclear magnetic resonance structure of an SH2 domain of phospholipase C-γl complexed with a high affinity binding peptide. Cell, 77, 461-472.
21. Pawson, T. & Schlessinger, J. (1993). SH2 and SH3 domains. Curr. Biol. 3, 434-442.
22. src src homology 2 domain binding to tyrosine-phosphorylated peptides determined by a competition assay or surface plasmon resonance. Proc. Natl Acad. Sci. USA, 90, 4902-4906.
23. fyn tyrosine kinases and CD45 protein tyrosine phosphatase in T-cell development and clonal selection. Immun. Rev. 135, 183-214.
24. gag-fps. Cell. Biol. 6, 4396-4408.
25. Sheldrick, G. M. & Schneider, T. R. (1996). SHELXL: high-resolution refinement. Methods in Enzymology (Carter, C. W. Jr & Sweet, R. W., eds), Academic Press, Orlando, FL, in the press.
26. Songyang, Z., Shoelson, S. E., Chaudhuri, M., Gish, G., Pawson, T., Haser, W. G., King, F., Roberts, T., Ratnofsky S., Lechleider, R. J., Neel, B. G., Birge, R. B., Fajardo, J. E., Chou, M. M., Hanafusa, H., Schaffhausen, B. & Cantley L. C. (1993). SH2 domains recognize specific phosphopeptide sequences. Cell, 72, 767-778.
27. Songyang, Z., Shoelson, S. E., McGlade, J., Olivier, P., Pawson, T., Bustelo, X. R., Barbacid, M., Sabe, H., Hanafusa, H., Yi, T., Ren, R., Baltimore, D., Ratnofsky, S., Feldman, R. A. & Cantley, L. C. (1994). Specific motifs recognized by the SH2 domains of csk, 3BP2, fps/fes, Grb-2, hep, she, syk, and vav. Mol. Cell. Biol. 14, 2777-2785.
28. Tong, L. (1993). REPLACE, a suite of computer programs for molecular-replacement calculations. J. Appl. Crystallog. 26, 748-751.
29. Tong, L. & Rossmann, M. G. (1990). The locked rotation function. Acta Crystallog. sect. A, 46, 783-792.
30. Tong, L. & Rossmann, M. G. (1996). Rotation function calculations with the program GLRF. Methods in Enzymology (Carter, C. W. Jr & Sweet, R. W., eds), Academic Press, Orlando, FL, in the press.
31. Waksman, G., Kominos, D., Robertson, S. C., Pant, N., Baltimore, D., Birge, R. B., Cowburn, D., Hanafusa, H., Mayer, B. J., Overduin, M., Resh, M. D., Rios, C. B., Silverman, L. & Kuriyan, J. (1992). Crystal structure of the phosphotyrosine recognition domain SH2 of v-src complexed with tyrosine-phosphorylated peptides. Nature, 358, 646-653.
32. Waksman, G., Shoelson, S. E., Pant, N., Cowburn, D. & Kuriyan, J. (1993). Binding of a high affinity phosphotyrosyl peptide to the src SH2 domain: crystal structures of the complexed and peptide-free forms. Cell, 72, 779-790.
33. c-src SH2 domain complexed with a phosphorylated tyrosine pentapeptide. Biochemistry, 34, 2107-2121.