dNTP binding site in rat DNA polymerase β revealed by controlled proteolysis and azido photoprobe cross-linking

Biochemistry

Volumn 35, Issue 12, 1996, Pages 3728-3734

  Srivastava, Deepak K ^a   Evans, Robert K ^b   Kumar, Amalendra ^a   Beard, William A ^a   Wilson, Samuel H ^a  

^a UNIVERSITY OF TEXAS MEDICAL BRANCH   (United States)

^b WILLIAMS COLLEGE   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ADENOSINE TRIPHOSPHATE; DNA POLYMERASE; URIDINE TRIPHOSPHATE;

AMINO TERMINAL SEQUENCE; ARTICLE; BINDING AFFINITY; CARBOXY TERMINAL SEQUENCE; CRYSTAL STRUCTURE; ENZYME BINDING; NONHUMAN; PRIORITY JOURNAL; PROTEIN CROSS LINKING; PROTEIN DEGRADATION; RAT; STRUCTURE ANALYSIS;

ADENOSINE TRIPHOSPHATE; AFFINITY LABELS; AMINO ACID SEQUENCE; ANIMALS; AZIDES; BINDING SITES; CROSS-LINKING REAGENTS; DEOXYRIBONUCLEOTIDES; DNA POLYMERASE I; ELECTROPHORESIS, POLYACRYLAMIDE GEL; EXONS; MODELS, MOLECULAR; MOLECULAR PROBES; MOLECULAR SEQUENCE DATA; MOLECULAR WEIGHT; PEPTIDE FRAGMENTS; PHOTOLYSIS; PROTEIN CONFORMATION; RATS; URIDINE TRIPHOSPHATE;

EID: 0029964484     PISSN: 00062960     EISSN: None     Source Type: Journal    
DOI: 10.1021/bi952632h     Document Type: Article

References (42)

1. Abbotts, J., SenGupta, D. N., Zmudzka, B., Widen, S. G , Notario, V., & Wilson, S. H. (1988) Biochemistry 27, 901-909.
2. Anderson, R. S., Lawrence, C. B., Wilson, S. H., & Beattie, K. L. (1987) Gene (Amst.) 60, 163-173.
3. Basu, A., Kedar, P., Wilson, S. H., & Modak, M. J. (1989) Biochemistry 28, 6305-6309.
4. Blake, C. C. F. (1978) Nature 273, 267.
5. Blake, C. (1983) Nature 306, 535-537.
6. Chen, M., & Horwitz, M. S. (1989) Proc. Natl. Acad. Sci. U.S.A. 86, 6116-6120.
7. Chyan, Y. J., Ackerman, S., Shepherd, N. S., McBride, O. W., Widen, S. G., Wilson, S. H., & Wood, T. G. (1994) Nucleic Acids Res. 22, 2719-2725.
8. Date, T., Yamaguchi, M., Hirose, F., Nishimoto, Y., Tanihara, K., & Matsukage, A. (1988) Biochemistry 27, 2983-2990.
9. Davies, J. F., Almassy, R. J., Hostomska, Z., Ferre, R. A., & Hostomsky, Z. (1994) Cell 76, 1123-1133.
10. Evans, R. K., & Haley, B. E. (1987) Biochemistry 26, 269-276.
11. Evans, R. K., & Coleman, M. S. (1989) Biochemistry 28, 707-712.
12. Evans, R. K., Beach, C. M., & Coleman, M. S. (1989) Biochemistry 28, 713-720.
13. Glynn, I. M., & Chappell, J. B. (1964) Biochem. J. 90, 147-149.
14. Havron, A., & Sperling, J. (1977) Biochemistry 16, 5631-5635.
15. Jacobo-Molina, A., Ding, J., Nanni, R. G., Clark, A. D., Lu, X., Tantillo, C., Williams, R. L., Kramer, G., Ferris, A. L., Clark, P., Hizi, A., Hughes, S. H., & Arnold, E. (1993) Proc. Natl. Acad. Sci. U.S.A. 90, 6320-6324.
16. Kabsch, W., & Sander, C. (1983) Biopolymers 22, 2577-2637.
17. Kim S.-J., Lewis, M. S., Knutson, J. R., Porter, D. K., Kumar, A., & Wilson, S. H. (1994) J. Mol. Biol. 244, 224-235.
18. Kohlstaedt, L. A., Wang, J., Friedman, J. M., Rice, P. A., & Steitz, T. A. (1992) Science 256, 1783-1790.
19. Kraulis, P. J. (1991) J. Appl. Crystallogr. 24, 946-950.
20. Kumar, A., Abbotts, J., Karawya, E. M., & Wilson, S. H. (1990a) Biochemistry 29, 7156-7159.
21. Kumar, A., Widen, S. G., Williams, K. R., Kedar, P., Karpel, R. L., & Wilson, S. H. (1990b) J. Biol. Chem. 265, 2124-2131.
22. Laemmli, U. K. (1970) Nature 227, 680-685.
23. Matsukage, A., Nishikawa, K., Ooi, T., Seto, Y., & Yamaguchi, M. (1987) J. Biol. Chem. 262, 8960-8962.
24. Matsumoto, Y., & Kim, K. (1995) Science 269, 699-702.
25. Ollis, D. L., Brick, P., Hamlin, R., Xuong, N. G., & Steitz, T. A. (1985) Nature 313, 762-766.
26. Pelletier, H., Sawaya, M. R., Kumar, A., Wilson, S. H., & Kraut, J. (1994) Science 264, 1891-1903.
27. Potter, R. L., & Haley, B. E. (1983) Methods Enzymol. 91, 613-633.
28. Prasad, R., Kumar, A., Widen, S. G., Casas-Finet, J. R., & Wilson, S. H. (1993) J. Biol. Chem. 268, 22746-22755.
29. Prasad, R., Beard, W. A., & Wilson, S. H. (1994) J. Biol. Chem 269, 18096-180101.
30. Raabe, T., Bollum, F. L. & Manley, J. L. (1991) Nature 353, 229.
31. Recupero, A. J., Rein, D. C., & Meyer, R. R. (1992) Biochemistry 31, 7989-7997.
32. Salvucci, M. E., Chavan, A. J., & Haley, B. E. (1992) Biochemistry 31, 4479-4487.
33. Sawaya, M. R., Pelletier, H., Kumar, A., Wilson, S. H., & Kraut, J. (1994) Science 264, 1930-1935.
34. SenGupta, D. N., Zmudzka, B. Z., Kumar, P., Cobianchi, F., Skowronski, J., & Wilson, S. H. (1986) Biochem. Biophys. Res Commun. 136, 341-347.
35. Singhal, R. K., Prasad, R., & Wilson, S. H. (1995) J. Biol. Chem. 270, 949-957.
36. Sobol, R. W., Horton, J. K., Singhal, R. K., Prasad, R., Kühn, R., Gu, H., Rajewsky, K., & Wilson, S. H. (1996) Nature 379, 183-186.
37. Sousa, R., Chung, Y. J., Rose, J. P., & Wang, B. (1993) Nature 364, 593-599.
38. Stoltzfus, A., Spencer, D. F., Zuker, M., Logsdon, J. M., Jr., & Doolittle, W. F. (1994) Science 265, 202-207.
39. Towbin, H., Staehelin, T., & Gordon, J. (1979) Proc. Natl. Acad. Sci. U.S.A. 76, 4350-4354.
40. Wilson, S. H. (1990) in The Eukaryotic Nucleus (Strauss, P. R., & Wilson, S. H., Eds.) Vol. 1, pp 199-234, The Telford Press, Inc., Caldwell, NJ.
41. Wang, T. S., Wong, S. W., & Korn, D. (1989) FASEB J. 3, 14-21.
42. Zmudzka, B. Z., SenGupta, D., Matsukage, A., Cobianchi, F., Kumar, P., & Wilson, S. H. (1986) Proc. Natl. Acad. Sci. U.S.A. 83, 5106-5110.