Recognition of diverse sequences by class I zinc fingers: Asymmetries and indirect effects on specificity in the interaction between CF2II and A+T-rich sequence elements

Proceedings of the National Academy of Sciences of the United States of America

Volumn 93, Issue 5, 1996, Pages 2159-2164

  Gogos, Joseph A ^a,c   Jin, Jingmin ^a,d   Wan, Hong ^a   Kokkinidis, Michael ^b   Kafatos, Fotis C ^a,e  

^a HARVARD UNIVERSITY   (United States)

^b Protein Structure Group   (Greece)

^c HOWARD HUGHES MEDICAL INSTITUTE   (United States)

^d NEW ENGLAND BIOLABS   (United States)

^e EUROPEAN MOLECULAR BIOLOGY LABORATORY   (Germany)

Author keywords

Asymmetric interactions; Binding site selection; DNA sequence recognition; Mutagenesis

Indexed keywords

CHLORAMPHENICOL ACETYLTRANSFERASE; CYSTEINE; HISTIDINE; TRANSCRIPTION FACTOR; ZINC FINGER PROTEIN;

ARTICLE; CARBOXY TERMINAL SEQUENCE; DNA BINDING; DNA SEQUENCE; DROSOPHILA MELANOGASTER; GENE TARGETING; NONHUMAN; PRIORITY JOURNAL; PROTEIN FAMILY; REPORTER GENE; SEQUENCE ANALYSIS; SITE DIRECTED MUTAGENESIS;

AMINO ACID SEQUENCE; ANIMALS; BASE COMPOSITION; BASE SEQUENCE; BINDING SITES; DNA PRIMERS; DNA-BINDING PROTEINS; DROSOPHILA MELANOGASTER; DROSOPHILA PROTEINS; MOLECULAR SEQUENCE DATA; MUTAGENESIS, SITE-DIRECTED; PROTEIN BINDING; RECOMBINANT PROTEINS; SEQUENCE ALIGNMENT; TRANS-ACTIVATION (GENETICS); TRANSCRIPTION FACTORS; ZINC FINGERS;

EID: 0029962246     PISSN: 00278424     EISSN: None     Source Type: Journal    
DOI: 10.1073/pnas.93.5.2159     Document Type: Article

References (32)

1. Harrison, S. C. (1991) Nature (London) 353, 715-719.
2. Nardelli, J., Gibson, T. & Charnay, P. (1992) Nucleic Acids Res. 20, 4137-4144.
3. Pavlctich, N. P. & Pabo, C. O. (1991) Science 252, 809-917.
4. Nakaseko, Y., Neuhaus, D., Klug, A. & Rhodes, D. (1992) J. Mol. Bioil. 228, 619-636.
5. Hsu, T., Gogos, J. A., Kirsh, S. A. & Kafatos, F. C. (1992) Science 257, 1946-1950.
6. Gogos, J. A., Hsu, T., Bolton, J. & Kafatos, F. C. (1992) Science 257, 1951-1955.
7. Brown, N. H. & Kafatos, F. C. (1988) J. Mol. Biol. 203, 425-437.
8. Kunkel, T. A. (1985) Proc. Natl. Acad. Sci. USA 82, 488-492.
9. Gogos, J. A. & Kafatos, F. C. (1994) Methods Mol. Biol. 30, 295-312.
10. Abel, T., Bhatt, R. & Maniatis, T. (1992) Genes Dev. 6, 466-480.
11. Shea, M. J., King, D. L., Conboy, M. J., Mariani, B. D. & Kafatos, F. C. (1990) Genes Dev. 4, 1128-1140.
12. Jacobs, G. H. (1992) EMBO J. 11, 4507-4517.
13. Nardelli, J., Gibson, T. J., Vesque, C. & Charnay, P. (1991) Nature (London) 349, 175-178.
14. Lee, M. S., Gippert, G. P., Soman, K. V., Case, D. A. & Wright, P. E. (1989) Science 245, 635-637.
15. Richardson, J. S. & Richardson, D. C. (1988) Science 240, 1648-1652.
16. Mastrangelo, I. A., Courey, A. J., Wall, J. S., Jackson, S. P. & Hough, P. V. C. (1991) Proc. Natl. Acad. Sci. USA 88, 5670-5674.
17. Joho, K. E., Darby, M. K., Crawford, E. T. & Brown, D. D. (1990) Cell 61, 293-300.
18. Del Rio, S. & Setzer, D. R. (1993) Proc. Natl. Acad. Sci. USA 90, 168-172.
19. Vrana, K. E., Churchill, M. E., Tullius, T. D. & Brown, D. D. (1988) Mol. Cell. Biol. 8, 1684-1696.
20. Churchill, M. E., Tullius, T. D. & Klug, A. (1990) Proc. Natl. Acad. Sci. USA 87, 5528-5532.
21. Pavletich, N. P. & Pabo, C. O. (1993) Science 261, 1701-1707.
22. Fairall, L., Schwabe, J. W., Campbell, E., Finch, J. T. & Rhodes, D. (1993) Nature (London) 366, 483-486.
23. Travers, A. (1993) DNA-Protein Interactions (Chapman & Hall, London).
24. Yoon, C., Prive, G. G., Goodsell, D. S. & Dickerson, R. E. (1988) Proc. Natl. Acad. Sci. USA 85, 6332-6336.
25. Desjarlais, J. R. & Berg, J. M. (1992) Proteins 12, 101-104.
26. Desjarlais, J. R. & Berg, J. M. (1992) Proc. Natl. Acad. Sci. USA 89, 7345-7349.
27. Thurkal, S. K., Morrison, M. E. & Young, E. T. (1992) Mol. Cell. Biol. 12, 2784-2792.
28. Choo, Y. & Klug, A. (1994) Proc. Natl. Acad. Sci. USA 91, 11163-11167.
29. Choo, Y. & Klug, A. (1994) Proc. Natl. Acad. Sci. USA 91, 11168-11172.
30. Wu, H., Yang, W. P. & Barbas, C. F. (1994) Proc. Natl. Acad. Sci. USA 92, 344-348.
31. Rebar, E. J. & Pabo, C. O. (1994) Science 263, 671-673.
32. Jamieson, A. C., Kim, S. H. & Wells, J. A. (1994) Biochemistry 33, 5689-5695.