메뉴 건너뛰기




Volumn 178, Issue 2, 1996, Pages 183-204

Evolution of transcriptional regulation system through promiscuous coupling of regulatory proteins with operons; Suggestion from protein sequence similarities in Escherichia coli

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL DNA; BACTERIAL PROTEIN; REGULATOR PROTEIN;

EID: 0029961137     PISSN: 00225193     EISSN: None     Source Type: Journal    
DOI: 10.1006/jtbi.1996.0016     Document Type: Article
Times cited : (8)

References (110)
  • 1
    • 0022018991 scopus 로고
    • Nitrogen regulation in Salmonella typhimurium. Identification of an ntrC protein-binding site and definition of a consensus binding sequence
    • AMES, G. F.-L. & NIKAIDO, K. (1985). Nitrogen regulation in Salmonella typhimurium. Identification of an ntrC protein-binding site and definition of a consensus binding sequence. EMBO J. 4, 539-547.
    • (1985) EMBO J. , vol.4 , pp. 539-547
    • Ames, G.F.-L.1    Nikaido, K.2
  • 2
    • 0026317737 scopus 로고
    • Mutational analysis of repression and activation of the tyrP gene in Escherichia coli
    • ANDREWS, A. E., LAWLEY, B. & PITTARD, A. J. (1991). Mutational analysis of repression and activation of the tyrP gene in Escherichia coli. J. Bacteriol. 173, 5068-5078.
    • (1991) J. Bacteriol. , vol.173 , pp. 5068-5078
    • Andrews, A.E.1    Lawley, B.2    Pittard, A.J.3
  • 3
    • 0026581288 scopus 로고
    • The prokaryotic enhancer binding protein NTRC has an ATPase activity which is phosphorylation and DNA dependent
    • AUSTIN, S. & DIXON, R. (1992). The prokaryotic enhancer binding protein NTRC has an ATPase activity which is phosphorylation and DNA dependent. EMBO J. 11, 2219-2228.
    • (1992) EMBO J. , vol.11 , pp. 2219-2228
    • Austin, S.1    Dixon, R.2
  • 4
    • 0025735568 scopus 로고
    • Influence of a mutation in the putative nucleotide binding site of the nitrogen regulatory protein NTRC on its positive control function
    • AUSTIN, S., KUNDROT, C. & DIXON, R. (1991). Influence of a mutation in the putative nucleotide binding site of the nitrogen regulatory protein NTRC on its positive control function. Nucleic Acids Res. 19, 2281-2287.
    • (1991) Nucleic Acids Res. , vol.19 , pp. 2281-2287
    • Austin, S.1    Kundrot, C.2    Dixon, R.3
  • 5
    • 0024362580 scopus 로고
    • Cloning of binding sequences for the Escherichia coli transcription activators, FNR and CRP: Location of bases involved in discrimination between FNR and CRP
    • BELL, A. I., GASTON, K. L., COLE, J. A. & BUSBY, S. J. W. (1989). Cloning of binding sequences for the Escherichia coli transcription activators, FNR and CRP: location of bases involved in discrimination between FNR and CRP. Nucleic Acids Res. 17, 3865-3874.
    • (1989) Nucleic Acids Res. , vol.17 , pp. 3865-3874
    • Bell, A.I.1    Gaston, K.L.2    Cole, J.A.3    Busby, S.J.W.4
  • 6
    • 0026026818 scopus 로고
    • The GTPase superfamily; conserved structure and molecular mechanism
    • BOURNE, H. R., SANDERS, D. A. & MCCORMICK, F. (1991). The GTPase superfamily; conserved structure and molecular mechanism. Nature 349, 117-127.
    • (1991) Nature , vol.349 , pp. 117-127
    • Bourne, H.R.1    Sanders, D.A.2    McCormick, F.3
  • 7
    • 0027319272 scopus 로고
    • Regulation of the Escherichia coli heat-shock response
    • BUKAU, B. (1993). Regulation of the Escherichia coli heat-shock response. Mol. Microbiol. 9, 671-680.
    • (1993) Mol. Microbiol. , vol.9 , pp. 671-680
    • Bukau, B.1
  • 8
    • 0025809651 scopus 로고
    • The MetR binding site in the Salmonella typhimurium metH gene: DNA sequence constraints on activation
    • BYERLY, K. A., URBANOWSKI, M. L. & STAUFFER, G. V. (1991). The MetR binding site in the Salmonella typhimurium metH gene: DNA sequence constraints on activation. J. Bacteriol. 173, 3547-3553.
    • (1991) J. Bacteriol. , vol.173 , pp. 3547-3553
    • Byerly, K.A.1    Urbanowski, M.L.2    Stauffer, G.V.3
  • 9
    • 0026562603 scopus 로고
    • Effect of lac repressor oligomerization on regulatory outcome
    • CHAKERIAN, A. E. & MATTHEWS, K. S. (1992). Effect of lac repressor oligomerization on regulatory outcome. Mol. Microbiol. 6, 963-968.
    • (1992) Mol. Microbiol. , vol.6 , pp. 963-968
    • Chakerian, A.E.1    Matthews, K.S.2
  • 10
    • 0026742139 scopus 로고
    • Arginine regulon of Escherichia coli K-12. Study of repressor-operator interactions and of in vitro binding affinities versus in vivo repression
    • CHARLIER, D., ROOVERS, M., VAN VLIET, F., BOYEN, A., CUNIN, R., NAKAMURA, Y., GLANSDORFF, N. & PIERARD, A. (1992). Arginine regulon of Escherichia coli K-12. Study of repressor-operator interactions and of in vitro binding affinities versus in vivo repression. J. Mol. Biol. 226, 367-386.
    • (1992) J. Mol. Biol. , vol.226 , pp. 367-386
    • Charlier, D.1    Roovers, M.2    Van Vliet, F.3    Boyen, A.4    Cunin, R.5    Nakamura, Y.6    Glansdorff, N.7    Pierard, A.8
  • 11
    • 0026003072 scopus 로고
    • Control site location and transcriptional regulation in Escherichia coli
    • COLLADO-VIDES, J., MAGASANIK, B. & GRALLA, J. D. (1991). Control site location and transcriptional regulation in Escherichia coli. Microbiol. Rev. 55, 371-394.
    • (1991) Microbiol. Rev. , vol.55 , pp. 371-394
    • Collado-Vides, J.1    Magasanik, B.2    Gralla, J.D.3
  • 12
    • 0016183718 scopus 로고
    • Evolutionary significance of autogenous regulation
    • COVE, D. J. (1974). Evolutionary significance of autogenous regulation. Nature 251, 256.
    • (1974) Nature , vol.251 , pp. 256
    • Cove, D.J.1
  • 13
    • 0002410129 scopus 로고
    • Cytoplasmic membrane
    • Neidhardt, F. C., Ingraham, J. L., Low, K. B., Magasanik, B., Schaechter, M. & Umbarger, H. E., eds, Washington DC: American Society for Microbiology
    • CRONAN, J. E., JR., GENNIS, R. B. & MALOY, S. R. (1987). Cytoplasmic Membrane. In: Escherichia coli and Salmonella typhimurium. Cellular and Molecular Biology (Neidhardt, F. C., Ingraham, J. L., Low, K. B., Magasanik, B., Schaechter, M. & Umbarger, H. E., eds), pp. 31-55. Washington DC: American Society for Microbiology.
    • (1987) Escherichia Coli and Salmonella Typhimurium. Cellular and Molecular Biology , pp. 31-55
    • Cronan J.E., Jr.1    Gennis, R.B.2    Maloy, S.R.3
  • 15
    • 0026006133 scopus 로고
    • A new oxygen-regulated operon in Escherichia coli comprises the genes for a putative third cytochrome oxidase and for pH 2.5 acid phosphatase (app A)
    • DASSA, J., FSIHI, H., MARCK, C., DION, M., KIEFFER-BONTEMPS, M. & BOQUET, P. L. (1991). A new oxygen-regulated operon in Escherichia coli comprises the genes for a putative third cytochrome oxidase and for pH 2.5 acid phosphatase (app A). Mol. Gen. Genet. 229, 341-352.
    • (1991) Mol. Gen. Genet. , vol.229 , pp. 341-352
    • Dassa, J.1    Fsihi, H.2    Marck, C.3    Dion, M.4    Kieffer-Bontemps, M.5    Boquet, P.L.6
  • 17
    • 0024276112 scopus 로고
    • Fur (ferric uptake regulation) protein and CAP (catabolite-activator protein) modulate transcription of fur gene in Escherichia coli
    • DE LORENZO, V., HERRERO, M., GIOVANNINI, F. & NEILANDS, J. B. (1988). Fur (ferric uptake regulation) protein and CAP (catabolite-activator protein) modulate transcription of fur gene in Escherichia coli. Eur. J. Biochem. 173, 537-546.
    • (1988) Eur. J. Biochem. , vol.173 , pp. 537-546
    • De Lorenzo, V.1    Herrero, M.2    Giovannini, F.3    Neilands, J.B.4
  • 18
    • 0018988461 scopus 로고
    • Cytochrome c and the evolution of energy metabolism
    • DICKERSON, R. E. (1980). Cytochrome c and the evolution of energy metabolism. Sci. Am. 242, 98-110.
    • (1980) Sci. Am. , vol.242 , pp. 98-110
    • Dickerson, R.E.1
  • 19
    • 0025190798 scopus 로고
    • The function of isolated domains and chimaeric proteins constructed from the transcriptional activators NifA and NtrC of Klebsiella pneumoniae
    • DRUMMOND, M. H., CONTRERAS, A. & MITCHENALL, L. A. (1990). The function of isolated domains and chimaeric proteins constructed from the transcriptional activators NifA and NtrC of Klebsiella pneumoniae. Mol. Microbiol. 4, 29-37.
    • (1990) Mol. Microbiol. , vol.4 , pp. 29-37
    • Drummond, M.H.1    Contreras, A.2    Mitchenall, L.A.3
  • 20
    • 0021188333 scopus 로고
    • An operator at -280 base pairs that is required for repression of araBAD operon promoter: Addition of DNA helical turns between the operator and promoter cyclically hinders repression
    • DUNN, T. M., HAHN, S., OGDEN, S. & SCHLEIF, R. F. (1984). An operator at -280 base pairs that is required for repression of araBAD operon promoter: Addition of DNA helical turns between the operator and promoter cyclically hinders repression. Proc. natl. Acad. Sci. U.S.A. 81, 5017-5020.
    • (1984) Proc. Natl. Acad. Sci. U.S.A. , vol.81 , pp. 5017-5020
    • Dunn, T.M.1    Hahn, S.2    Ogden, S.3    Schleif, R.F.4
  • 22
    • 0026451968 scopus 로고
    • Evolution of metabolic pathways by chance assembly of enzyme proteins generated from sense and antisense strands of pre-existing genes
    • FUKUCHI, S. & OTSUKA, J. (1992). Evolution of metabolic pathways by chance assembly of enzyme proteins generated from sense and antisense strands of pre-existing genes. J. theor. Biol. 158, 271-291.
    • (1992) J. Theor. Biol. , vol.158 , pp. 271-291
    • Fukuchi, S.1    Otsuka, J.2
  • 23
    • 0017871558 scopus 로고
    • Autogenous regulation of RNA polymerase ßsubunit synthesis in vitro
    • FUKUDA, R., TAKETO, M. & ISHIHAMA, A. (1978). Autogenous regulation of RNA polymerase ßsubunit synthesis in vitro. J. Biol. Chem. 253, 4501-4504.
    • (1978) J. Biol. Chem. , vol.253 , pp. 4501-4504
    • Fukuda, R.1    Taketo, M.2    Ishihama, A.3
  • 25
    • 0027443625 scopus 로고
    • TdcA, a transcriptional activator of the tdcABC operon of Escherichia coli, is a member of the LysR family of proteins
    • GANDURI, Y. L., SADDA, S. R., DATTA, M. W., JAMBUKESWARAN, R. K. & DATTA, P. (1993). TdcA, a transcriptional activator of the tdcABC operon of Escherichia coli, is a member of the LysR family of proteins. Mol. Gen. Genet. 240, 395-402.
    • (1993) Mol. Gen. Genet. , vol.240 , pp. 395-402
    • Ganduri, Y.L.1    Sadda, S.R.2    Datta, M.W.3    Jambukeswaran, R.K.4    Datta, P.5
  • 26
    • 0024321705 scopus 로고
    • The repressor of the PEP: Fructose phosphotransferase system is required for the transcription of the pps gene of Escherichia coli
    • GEERSE, R. H., VAN DER PLUIJM, J. & POSTMA, P. W. (1989). The repressor of the PEP: Fructose phosphotransferase system is required for the transcription of the pps gene of Escherichia coli. Mol. Gen. Genet. 218, 348-352.
    • (1989) Mol. Gen. Genet. , vol.218 , pp. 348-352
    • Geerse, R.H.1    Van Der Pluijm, J.2    Postma, P.W.3
  • 27
    • 0008057119 scopus 로고
    • Une, loi des reparitions economiques: L'effet proportionnel
    • GIBRAT, R. (1930). Une, loi des reparitions economiques: L'effet proportionnel. Bull. Statist. Gen. Fr. 19, 469ff.
    • (1930) Bull. Statist. Gen. Fr. , vol.19
    • Gibrat, R.1
  • 28
    • 0018263844 scopus 로고
    • Why genes in pieces?
    • GILBERT, W. (1978). Why genes in pieces? Nature 271, 501.
    • (1978) Nature , vol.271 , pp. 501
    • Gilbert, W.1
  • 29
    • 0016041963 scopus 로고
    • Autogenous regulation of gene expression
    • GOLDBERGER, R. F. (1974). Autogenous regulation of gene expression. Science 183, 810-816.
    • (1974) Science , vol.183 , pp. 810-816
    • Goldberger, R.F.1
  • 30
    • 85030190483 scopus 로고
    • Autogenous regulation of gene expression
    • Copeland, J. C. & Marzluf, G. A., eds, Columbus: Ohio State University Press
    • GOLDBERGER, R. F. & DEELEY, R. G. (1976). Autogenous regulation of gene expression. In: Regulatory Biology (Copeland, J. C. & Marzluf, G. A., eds), pp. 178-195. Columbus: Ohio State University Press.
    • (1976) Regulatory Biology , pp. 178-195
    • Goldberger, R.F.1    Deeley, R.G.2
  • 31
    • 0024398326 scopus 로고
    • Upstream activating sequences that are shared by two divergently transcribed operons mediate cAMP-CRP regulation of pilus-adhesin in Escherichia coli
    • GORANSSON, M., FORMAN, K., NILSSON, P. & UHLIN, B. E. (1989). Upstream activating sequences that are shared by two divergently transcribed operons mediate cAMP-CRP regulation of pilus-adhesin in Escherichia coli. Mol. Microbiol. 3, 1557-1565.
    • (1989) Mol. Microbiol. , vol.3 , pp. 1557-1565
    • Goransson, M.1    Forman, K.2    Nilsson, P.3    Uhlin, B.E.4
  • 32
    • 0024343602 scopus 로고
    • A global response induced in Escherichia coli by redox-cycling agents overlaps with that induced by peroxide stress
    • GREENBERG, J. T. & DEMPLE, B. (1989). A global response induced in Escherichia coli by redox-cycling agents overlaps with that induced by peroxide stress. J. Bacteriol. 171, 3933-3939.
    • (1989) J. Bacteriol. , vol.171 , pp. 3933-3939
    • Greenberg, J.T.1    Demple, B.2
  • 33
    • 0025773408 scopus 로고
    • Molecular mechanism of negative autoregulation of Escherichia coli crp gene
    • HANAMURA, A. & AIBA, H. (1991). Molecular mechanism of negative autoregulation of Escherichia coli crp gene. Nucleic Acids Res. 19, 4413-419.
    • (1991) Nucleic Acids Res. , vol.19 , pp. 4413-4419
    • Hanamura, A.1    Aiba, H.2
  • 34
    • 0025330317 scopus 로고
    • Genes of the Escherichia coli pur regulon are negatively controlled by a repressor-operator interaction
    • HE, B., SHIAN, A., CHOI, K. Y., ZALKIN, H. & SMITH, J. M. (1990). Genes of the Escherichia coli pur regulon are negatively controlled by a repressor-operator interaction. J. Bacteriol. 175, 4555-4562.
    • (1990) J. Bacteriol. , vol.175 , pp. 4555-4562
    • He, B.1    Shian, A.2    Choi, K.Y.3    Zalkin, H.4    Smith, J.M.5
  • 35
    • 0025716308 scopus 로고
    • Homologous sugar transport proteins in Escherichia coli and their relatives in both prokaryotes and eukaryotes
    • HENDERSON, P. J. F. & MAIDEN, M. C. J. (1990). Homologous sugar transport proteins in Escherichia coli and their relatives in both prokaryotes and eukaryotes. Phil. Trans. R. Soc. Lond. B326, 391-410.
    • (1990) Phil. Trans. R. Soc. Lond. B , vol.326 , pp. 391-410
    • Henderson, P.J.F.1    Maiden, M.C.J.2
  • 36
    • 0025043820 scopus 로고
    • Characterization of the Escherichia coli araFGH and arajpromoters
    • HENDRICKSON, W., STONER, C. & SCHLEIF, R. (1990). Characterization of the Escherichia coli araFGH and araJpromoters. J. Mol. Biol. 215, 497-510.
    • (1990) J. Mol. Biol. , vol.215 , pp. 497-510
    • Hendrickson, W.1    Stoner, C.2    Schleif, R.3
  • 39
    • 0023991287 scopus 로고
    • A family of closely related ATP-binding subunits from prokaryotic and eukaryotic cells
    • HIGGINS, C. F., GALLAGHER, M. P. MIMMACK, M. L. & PEARCE, S. R. (1988). A family of closely related ATP-binding subunits from prokaryotic and eukaryotic cells. BioEssays, 8, 111-116.
    • (1988) BioEssays , vol.8 , pp. 111-116
    • Higgins, C.F.1    Gallagher, M.P.2    Mimmack, M.L.3    Pearce, S.R.4
  • 40
    • 0025049505 scopus 로고
    • Discrimination between adaptive and neutral amino acid substitutions in vertebrate hemoglobins
    • HORIMOTO, K., SUZUKI, H. & OTSUKA, J. (1990). Discrimination between adaptive and neutral amino acid substitutions in vertebrate hemoglobins. J. Mol. Evol. 31, 302-324.
    • (1990) J. Mol. Evol. , vol.31 , pp. 302-324
    • Horimoto, K.1    Suzuki, H.2    Otsuka, J.3
  • 41
    • 0027155055 scopus 로고
    • Lactobacillus casei contains a member of the CRP-FNR famly
    • IRVINE, A. S. & GUEST, J. R. (1993). Lactobacillus casei contains a member of the CRP-FNR famly. Nucleic Acids Res. 21, 753.
    • (1993) Nucleic Acids Res. , vol.21 , pp. 753
    • Irvine, A.S.1    Guest, J.R.2
  • 42
    • 0027170374 scopus 로고
    • Adaptation of Escherichia coli to redox environments by gene expression
    • IUCHI, S. & LIN, E. C. C. (1993). Adaptation of Escherichia coli to redox environments by gene expression. Mol. Microbiol. 9, 9-15.
    • (1993) Mol. Microbiol. , vol.9 , pp. 9-15
    • Iuchi, S.1    Lin, E.C.C.2
  • 43
    • 0025334736 scopus 로고
    • The arcb gene of Escherichia coli encodes a sensor-regulator protein for anaerobic repression of the arc modulon
    • IUCHI, S., MATSUDA, Z., FUJIWARA, T. & LIN, E. C. C. (1990). The arcB gene of Escherichia coli encodes a sensor-regulator protein for anaerobic repression of the arc modulon. Mol. Microbiol. 4, 715-727.
    • (1990) Mol. Microbiol. , vol.4 , pp. 715-727
    • Iuchi, S.1    Matsuda, Z.2    Fujiwara, T.3    Lin, E.C.C.4
  • 44
    • 54249116230 scopus 로고
    • Genetic regulatory mechanisms in the synthesis of proteins
    • JACOB, F. & MONOD, J. (1961). Genetic regulatory mechanisms in the synthesis of proteins. J. Mol. Biol. 3, 318-356.
    • (1961) J. Mol. Biol. , vol.3 , pp. 318-356
    • Jacob, F.1    Monod, J.2
  • 45
    • 0025775119 scopus 로고
    • Modular structure of FixJ: Homology of the transcriptional activator domain with the -35 binding domain of sigma factors
    • KAHN, D. & DITTA, G. (1991). Modular structure of FixJ: homology of the transcriptional activator domain with the -35 binding domain of sigma factors. Mol. Microbiol. 5, 987-997.
    • (1991) Mol. Microbiol. , vol.5 , pp. 987-997
    • Kahn, D.1    Ditta, G.2
  • 46
    • 0000057211 scopus 로고
    • On the gibrat distribution
    • KALECKI, M. (1945). On the Gibrat distribution. Econometrica 13, 161-170.
    • (1945) Econometrica , vol.13 , pp. 161-170
    • Kalecki, M.1
  • 47
    • 0014421064 scopus 로고
    • Evolutionary rate at the molecular level
    • KIMURA, M. (1968). Evolutionary rate at the molecular level. Nature 217, 624-626.
    • (1968) Nature , vol.217 , pp. 624-626
    • Kimura, M.1
  • 48
    • 0014680905 scopus 로고
    • Non-Darwinian evolution; most evolutionary changes in proteins may be due to neutral mutations and genetic drift
    • KING, J. L. & JUKES, T. H. (1969). Non-Darwinian evolution; most evolutionary changes in proteins may be due to neutral mutations and genetic drift. Science 164, 788-798.
    • (1969) Science , vol.164 , pp. 788-798
    • King, J.L.1    Jukes, T.H.2
  • 49
    • 0002370215 scopus 로고
    • Über das logarithmisch norale verteilungsgesetz der dimensionen der teilchen bei zerstuckelung
    • KOLMOGOROFF, A. N. (1941). Über das logarithmisch Norale Verteilungsgesetz der Dimensionen der Teilchen bei Zerstuckelung. C. R. Acad. Sci. XXXI, 99-101.
    • (1941) C. R. Acad. Sci. , vol.31 , pp. 99-101
    • Kolmogoroff, A.N.1
  • 50
    • 0026738588 scopus 로고
    • The molecular basis for positive regulation of cys promoters in Salmonella typhimurium and Escherichia coli
    • KREDICH, N. M. (1992). The molecular basis for positive regulation of cys promoters in Salmonella typhimurium and Escherichia coli. Mol. Microbiol. 6, 2747-2753.
    • (1992) Mol. Microbiol. , vol.6 , pp. 2747-2753
    • Kredich, N.M.1
  • 52
    • 0023491506 scopus 로고
    • A possible mode of protein evolution
    • KUNISAWA, T. & OTSUKA, J. (1987). A possible mode of protein evolution. Protein Seq. Data Anal. 1, 117-121.
    • (1987) Protein Seq. Data Anal. , vol.1 , pp. 117-121
    • Kunisawa, T.1    Otsuka, J.2
  • 53
    • 0021839173 scopus 로고
    • Stringent control of bacterial transcription
    • LAMOND, A. I. & TRAVERS, A. A. (1985). Stringent control of bacterial transcription. Cell 41, 6-8.
    • (1985) Cell , vol.41 , pp. 6-8
    • Lamond, A.I.1    Travers, A.A.2
  • 54
    • 0017243175 scopus 로고
    • Glycerol dissimilation and its regulation in bacteria
    • LIN, E. C. C. (1976). Glycerol dissimilation and its regulation in bacteria. Ann. Rev. Microbiol. 30, 535-578.
    • (1976) Ann. Rev. Microbiol. , vol.30 , pp. 535-578
    • Lin, E.C.C.1
  • 55
    • 0021919480 scopus 로고
    • Rapid and sensitive protein similarity searches
    • LIPMAN, D. J. & PEARSON, W. R. (1985). Rapid and sensitive protein similarity searches. Science 227, 1435-1441.
    • (1985) Science , vol.227 , pp. 1435-1441
    • Lipman, D.J.1    Pearson, W.R.2
  • 56
    • 0025336835 scopus 로고
    • Transcription and regulation of the cpdB gene in Escherichia coli K12 and Salmonella typhimurium LT2: Evidence for modulation of constitutive promoters by cyclic AMP-CRP complex
    • LIU, J. & BEACHAM, I. R. (1990). Transcription and regulation of the cpdB gene in Escherichia coli K12 and Salmonella typhimurium LT2: Evidence for modulation of constitutive promoters by cyclic AMP-CRP complex. Mol. Gen. Genet. 222, 161-165.
    • (1990) Mol. Gen. Genet. , vol.222 , pp. 161-165
    • Liu, J.1    Beacham, I.R.2
  • 57
    • 0026612797 scopus 로고
    • 70 family: Sequence conservation and evolutionary relationships
    • 70 family: sequence conservation and evolutionary relationships. J. Bacteriol. 174, 3843-3849.
    • (1992) J. Bacteriol. , vol.174 , pp. 3843-3849
    • Lonetto, M.1    Gribskov, M.2    Gross, C.A.3
  • 60
    • 0027050193 scopus 로고
    • Structural homology between rbs repressor and ribose binding protein implies functional similarity
    • MAUZY, C. A. & HERMODSON, M. A. (1992). Structural homology between rbs repressor and ribose binding protein implies functional similarity. Protein Science 1, 843-849.
    • (1992) Protein Science , vol.1 , pp. 843-849
    • Mauzy, C.A.1    Hermodson, M.A.2
  • 61
    • 0026770519 scopus 로고
    • Promoter elements required for positive control of transcription of the Escherichia coli uhpT gene
    • MERKEL, T. J., NELSON, D. M., BRAUER, C. L. & KADNER, R. J. (1992). Promoter elements required for positive control of transcription of the Escherichia coli uhpT gene. J. Bacteriol. 174, 2763-2770.
    • (1992) J. Bacteriol. , vol.174 , pp. 2763-2770
    • Merkel, T.J.1    Nelson, D.M.2    Brauer, C.L.3    Kadner, R.J.4
  • 63
  • 64
    • 0027374109 scopus 로고
    • Control and function of lysyl-tRNA synthetases: Diversity and co-ordination
    • NAKAMURA, Y. & ITO, K. (1993). Control and function of lysyl-tRNA synthetases: Diversity and co-ordination. Mol. Microbiol. 10, 225-231.
    • (1993) Mol. Microbiol. , vol.10 , pp. 225-231
    • Nakamura, Y.1    Ito, K.2
  • 65
    • 0001015633 scopus 로고
    • Purines and pyrimidines
    • Neidhardt, F. C., Ingraham, J. L., Low, K. B., Magasanik, B., Schaechter, M. & Umbarger, H. E., eds, Washington DC: American Society for Microbiology
    • NEUHARD, J. & NYGAARD, P. (1987). Purines and Pyrimidines. In: Escherichia coli and Salmonella typhimurium. Cellular and Molecular Biology (Neidhardt, F. C., Ingraham, J. L., Low, K. B., Magasanik, B., Schaechter, M. & Umbarger, H. E., eds), pp. 445-473. Washington DC: American Society for Microbiology.
    • (1987) Escherichia Coli and Salmonella Typhimurium. Cellular and Molecular Biology , pp. 445-473
    • Neuhard, J.1    Nygaard, P.2
  • 66
    • 0026588952 scopus 로고
    • The leucine-lrp regulon in E. coli: A global response in search of a raison d'etre
    • NEWMAN, E. B., D'ARI, R. & LIN, R. T. (1992). The leucine-Lrp regulon in E. coli: A global response in search of a raison d'etre. Cell 68, 617-619.
    • (1992) Cell , vol.68 , pp. 617-619
    • Newman, E.B.1    D'Ari, R.2    Lin, R.T.3
  • 67
    • 0026586173 scopus 로고
    • Structure model of core proteins in photosystem I inferred from the comparison with those in photosystem II and bacteria
    • OTSUKA, J., MIYACHI, H. & HORIMOTO, K. (1992). Structure model of core proteins in photosystem I inferred from the comparison with those in photosystem II and bacteria. Biochim et Biophys. Acta 1118, 194-210.
    • (1992) Biochim et Biophys. Acta , vol.1118 , pp. 194-210
    • Otsuka, J.1    Miyachi, H.2    Horimoto, K.3
  • 68
    • 0027446520 scopus 로고
    • Divergence pattern and selective mode in protein evolution: The example of vertebrate myoglobins and hemoglobin chains
    • OTSUKA, J., MIYAZAKI, K. & HORIMOTO, K. (1993). Divergence pattern and selective mode in protein evolution: the example of vertebrate myoglobins and hemoglobin chains. J. Mol. Evol. 36, 153-181.
    • (1993) J. Mol. Evol. , vol.36 , pp. 153-181
    • Otsuka, J.1    Miyazaki, K.2    Horimoto, K.3
  • 69
    • 0024195017 scopus 로고
    • Regulation in the synthesis of Escherichia coli RNA polymerase proposed from sequence analysis
    • OTSUKA, J., SUZUKI, H. & KUNISAWA, T. (1988). Regulation in the synthesis of Escherichia coli RNA polymerase proposed from sequence analysis. Protein Seq. Data Anal. 1, 355-361.
    • (1988) Protein Seq. Data Anal. , vol.1 , pp. 355-361
    • Otsuka, J.1    Suzuki, H.2    Kunisawa, T.3
  • 70
    • 0018604501 scopus 로고
    • Attenuation in the Escherichia coli tryptophan operon: Role of RNA secondary structure involving the tryptophan codon region
    • OXENDER, D. L., ZURAWSKI, G. & YANOFSKI, C. (1979). Attenuation in the Escherichia coli tryptophan operon: Role of RNA secondary structure involving the tryptophan codon region. Proc. natl. Acad. Sci. U.S.A. 76, 5524-5528.
    • (1979) Proc. Natl. Acad. Sci. U.S.A. , vol.76 , pp. 5524-5528
    • Oxender, D.L.1    Zurawski, G.2    Yanofski, C.3
  • 71
    • 0038534071 scopus 로고
    • Gene regulation and its role in evolutionary processes
    • Karlin, S. & Nevo, E., eds, Orlando, Florida: Academic Press, Inc.
    • PAIGEN, K. (1986). Gene regulation and its role in evolutionary processes. In: Evolutionary Processes and Theory (Karlin, S. & Nevo, E., eds), pp. 3-36. Orlando, Florida: Academic Press, Inc.
    • (1986) Evolutionary Processes and Theory , pp. 3-36
    • Paigen, K.1
  • 72
    • 0023989064 scopus 로고
    • Improved tools for biological sequence comparison
    • PEARSON, W. R. & LIPMAN, D. J. (1988). Improved tools for biological sequence comparison. Proc. natl. Acad. Sci. U.S.A. 85, 2444-2448.
    • (1988) Proc. Natl. Acad. Sci. U.S.A. , vol.85 , pp. 2444-2448
    • Pearson, W.R.1    Lipman, D.J.2
  • 73
    • 0027291428 scopus 로고
    • Phosphoenolpyruvate: Carbohydrate phosphotransferase systems of bacteria
    • POSTMA, P. W., LENGELER, J. W. & JACOBSON, G. R. (1993). Phosphoenolpyruvate: carbohydrate phosphotransferase systems of bacteria. Microbiol. Rev. 57, 543-594.
    • (1993) Microbiol. Rev. , vol.57 , pp. 543-594
    • Postma, P.W.1    Lengeler, J.W.2    Jacobson, G.R.3
  • 74
    • 0024416995 scopus 로고
    • Characterization of OmpR binding sequences in the upstream region of the ompF promoter essential for transcriptional activation
    • RAMPERSAUD, A., NORIOKA, S. & INOUYE, M. (1989). Characterization of OmpR binding sequences in the upstream region of the ompF promoter essential for transcriptional activation. J. Biol. Chem. 264, 18693-18700.
    • (1989) J. Biol. Chem. , vol.264 , pp. 18693-18700
    • Rampersaud, A.1    Norioka, S.2    Inouye, M.3
  • 75
    • 0025845723 scopus 로고
    • Analysis of the gluconate (gnt) operon of Bacillus subtilis
    • REIZER, A., DEUTSCHER, J. SAIER, M. H., JR. & REIZER, J. (1991). Analysis of the gluconate (gnt) operon of Bacillus subtilis. Mol. Microbiol. 5, 1081-1089.
    • (1991) Mol. Microbiol. , vol.5 , pp. 1081-1089
    • Reizer, A.1    Deutscher, J.2    Saier M.H., Jr.3    Reizer, J.4
  • 76
    • 0022551186 scopus 로고
    • Enhancement of bacterial gene expression by insertion elements or by mutation in a CAP-cAMP binding site
    • REYNOLDS, A. E., MAHADEVAN, S., LEGRICE, S. F. J. & WRIGHT, A. (1984). Enhancement of bacterial gene expression by insertion elements or by mutation in a CAP-cAMP binding site. J. Mol. Biol. 191, 85-95.
    • (1984) J. Mol. Biol. , vol.191 , pp. 85-95
    • Reynolds, A.E.1    Mahadevan, S.2    LeGrice, S.F.J.3    Wright, A.4
  • 77
    • 0025158474 scopus 로고
    • Autoregulation of Escherichia coli pur R requires two control sites downstream of the promoter
    • ROLFES, R. J. & ZALKIN, H. (1990). Autoregulation of Escherichia coli pur R requires two control sites downstream of the promoter. J. Bacteriol. 172, 5758-5766.
    • (1990) J. Bacteriol. , vol.172 , pp. 5758-5766
    • Rolfes, R.J.1    Zalkin, H.2
  • 78
    • 0003965698 scopus 로고
    • Malabar, Florida: Robert E. Krieger Publishing Company, Inc.
    • ROMESBURG, H. C. (1989). Cluster Analysis for Researchers. Malabar, Florida: Robert E. Krieger Publishing Company, Inc.
    • (1989) Cluster Analysis for Researchers
    • Romesburg, H.C.1
  • 79
    • 0023652071 scopus 로고
    • Deduced products of C4-dicarboxylate transport regulatory genes of Rhizobium leguminosarum are homologous to nitrogen regulatory gene products
    • RONSON, C. W., ASTWOOD, P. M., NIXON, B. T. & AUSUBEL, F. M. (1987). Deduced products of C4-dicarboxylate transport regulatory genes of Rhizobium leguminosarum are homologous to nitrogen regulatory gene products. Nucleic Acids Res. 15, 7921-7934.
    • (1987) Nucleic Acids Res. , vol.15 , pp. 7921-7934
    • Ronson, C.W.1    Astwood, P.M.2    Nixon, B.T.3    Ausubel, F.M.4
  • 81
    • 0024554141 scopus 로고
    • Protein phosphorylation and allosteric control of inducer exclusion and catabolite repression by the bacterial phosphoenolpyruvate: Sugar phosphotransferase system
    • SAIER, M. H., JR. (1989). Protein phosphorylation and allosteric control of inducer exclusion and catabolite repression by the bacterial phosphoenolpyruvate: sugar phosphotransferase system. Microbiol. Rev. 53, 109-120.
    • (1989) Microbiol. Rev. , vol.53 , pp. 109-120
    • Saier M.H., Jr.1
  • 82
    • 0016145568 scopus 로고
    • Comparison of classical and autogenous systems of regulation in inducible operons
    • SAVAGEAU, M. A. (1974). Comparison of classical and autogenous systems of regulation in inducible operons. Nature 252, 546-549.
    • (1974) Nature , vol.252 , pp. 546-549
    • Savageau, M.A.1
  • 83
    • 0016770391 scopus 로고
    • Significance of autogenously regulated and constitutive synthesis of regulatory proteins in repressible biosynthetic systems
    • SAVAGEAU, M. A. (1975). Significance of autogenously regulated and constitutive synthesis of regulatory proteins in repressible biosynthetic systems. Nature 258, 208-214.
    • (1975) Nature , vol.258 , pp. 208-214
    • Savageau, M.A.1
  • 84
    • 0011197438 scopus 로고
    • Autogenous and classical regulation of gene expression: A general theory and experimental evidence
    • Goldberger, R. F., ed., New York: Plenum Press
    • SAVAGEAU, M. A. (1979). Autogenous and classical regulation of gene expression: a general theory and experimental evidence. In: Biological Regulation and Development (Goldberger, R. F., ed.), pp. 57-108. New York: Plenum Press.
    • (1979) Biological Regulation and Development , pp. 57-108
    • Savageau, M.A.1
  • 85
    • 0002539674 scopus 로고
    • Are there rules governing patterns of gene regulation?
    • Goodwin, B. & Saunders, P. eds, Edinburgh: Edinburgh University Press
    • SAVAGEAU, M. A. (1989). Are there rules governing patterns of gene regulation? In: Theoretical Biology (Goodwin, B. & Saunders, P. eds), pp. 42-66. Edinburgh: Edinburgh University Press.
    • (1989) Theoretical Biology , pp. 42-66
    • Savageau, M.A.1
  • 86
    • 0026549141 scopus 로고
    • Gene regulation of plasmid- and chromosome-determined inorganic ion transport in bacteria
    • SILVER, S. & WALDERHAUG, M. (1992). Gene regulation of plasmid- and chromosome-determined inorganic ion transport in bacteria. Microbiol. Rev. 56, 195-228.
    • (1992) Microbiol. Rev. , vol.56 , pp. 195-228
    • Silver, S.1    Walderhaug, M.2
  • 87
    • 0019887799 scopus 로고
    • Identification of common molecular subsequences
    • SMITH, T. F. & WATERMAN, M. S. (1981). Identification of common molecular subsequences. J. Mol. Biol. 147, 195-197.
    • (1981) J. Mol. Biol. , vol.147 , pp. 195-197
    • Smith, T.F.1    Waterman, M.S.2
  • 88
    • 0025820091 scopus 로고
    • Adaptive responses to oxygen limitation in Escherichia coli
    • SPIRO, S. & GUEST, J. R. (1991). Adaptive responses to oxygen limitation in Escherichia coli. Trends Biochem. Sci. 16, 310-314.
    • (1991) Trends Biochem. Sci. , vol.16 , pp. 310-314
    • Spiro, S.1    Guest, J.R.2
  • 90
    • 0347445017 scopus 로고
    • Structural similarity in the DNA binding domains of catabolite gene activator and cro repressor proteins
    • STEITE, T. A., OHLENDORF, D. H., MCKAY, D. B., ANDERSON, W. F. & MATHEWS, B. W. (1982). Structural similarity in the DNA binding domains of catabolite gene activator and cro repressor proteins. Proc. natl. Acad. Sci. U.S.A. 179, 3097-3100.
    • (1982) Proc. Natl. Acad. Sci. U.S.A. , vol.179 , pp. 3097-3100
    • Steite, T.A.1    Ohlendorf, D.H.2    McKay, D.B.3    Anderson, W.F.4    Mathews, B.W.5
  • 91
    • 0023991777 scopus 로고
    • Identification and expression of genes narl and narX of the nar (nitrate reductase) locus in Escherichia coli K-12
    • STEWART, V. & PARALES, J., JR. (1988). Identification and expression of genes narL and narX of the nar (nitrate reductase) locus in Escherichia coli K-12. J. Bacteriol. 170, 1589-1597.
    • (1988) J. Bacteriol. , vol.170 , pp. 1589-1597
    • Stewart, V.1    Parales J., Jr.2
  • 92
    • 0024398149 scopus 로고
    • Protein phosphorylation and regulation of adaptive responses in bacteria
    • STOCK, J. B., NINFA, A. J. & STOCK, A. M. (1989). Protein phosphorylation and regulation of adaptive responses in bacteria. Microbiol. Rev. 53, 450-490.
    • (1989) Microbiol. Rev. , vol.53 , pp. 450-490
    • Stock, J.B.1    Ninfa, A.J.2    Stock, A.M.3
  • 93
    • 0026680444 scopus 로고
    • The Escherichia coli K-12 cyn operon is positively regulated by a member of the lysR family
    • SUNG, Y.-C. & FUCHS, J. A. (1992). The Escherichia coli K-12 cyn operon is positively regulated by a member of the lysR family. J. Bacteriol. 174, 3645-3650.
    • (1992) J. Bacteriol. , vol.174 , pp. 3645-3650
    • Sung, Y.-C.1    Fuchs, J.A.2
  • 94
    • 0027256676 scopus 로고
    • Structural, functional, and evolutionary relationships among extracellular solute-binding receptors of bacteria
    • TAM, R. & SAIER, M. H., JR. (1993). Structural, functional, and evolutionary relationships among extracellular solute-binding receptors of bacteria. Microbiol. Rev. 57, 320-346.
    • (1993) Microbiol. Rev. , vol.57 , pp. 320-346
    • Tam, R.1    Saier M.H., Jr.2
  • 95
    • 0025828522 scopus 로고
    • iciA, an Escherichia coli gene encoding a specific inhibitor of chromosomal initiation of replication in vitro
    • THÖNY, B., HWANG, D. S., FRADKIN, L. & KORNBERG, A. (1991). iciA, an Escherichia coli gene encoding a specific inhibitor of chromosomal initiation of replication in vitro. Proc. natl. Acad. Sci. U.S.A. 88, 4066-4070.
    • (1991) Proc. Natl. Acad. Sci. U.S.A. , vol.88 , pp. 4066-4070
    • Thöny, B.1    Hwang, D.S.2    Fradkin, L.3    Kornberg, A.4
  • 96
    • 0025162032 scopus 로고
    • Purification and properties of RhaR, the positive regulator of the L-rhamnose operons of Escherichia coli
    • TOBIN, J. F. & SCHLEIF, R. F. (1990). Purification and properties of RhaR, the positive regulator of the L-rhamnose operons of Escherichia coli. J. Mol. Biol. 211, 75-89.
    • (1990) J. Mol. Biol. , vol.211 , pp. 75-89
    • Tobin, J.F.1    Schleif, R.F.2
  • 97
    • 0014449793 scopus 로고
    • Regulation of amino acid metabolism
    • UMBARGER, H. E. (1969). Regulation of amino acid metabolism. Ann. Rev. Biochem. 38, 323-370.
    • (1969) Ann. Rev. Biochem. , vol.38 , pp. 323-370
    • Umbarger, H.E.1
  • 98
    • 0024456480 scopus 로고
    • Genetic and biochemical analysis of the MetR activator-binding site in the metE metR control region of Samonella typhimurium
    • URBANOWSKI, M. L. & STAUFFER, G. V. (1989). Genetic and biochemical analysis of the MetR activator-binding site in the metE metR control region of Samonella typhimurium. J. Bacteriol. 171, 5620-5629.
    • (1989) J. Bacteriol. , vol.171 , pp. 5620-5629
    • Urbanowski, M.L.1    Stauffer, G.V.2
  • 99
    • 0026338828 scopus 로고
    • rcbR, a gene coding for a member of the LysR family of transcriptional regulators, is located upstream of the expressed set of ribulose 1,5-bisphosphate carboxylase/oxygenase genes in the photosynthetic bacterium Chromatium vinosum
    • VIALE, A. M., KOBAYASHI, H., AKAZAWA, T. & HENIKOFF, S. (1991). rcbR, a gene coding for a member of the LysR family of transcriptional regulators, is located upstream of the expressed set of ribulose 1,5-bisphosphate carboxylase/oxygenase genes in the photosynthetic bacterium Chromatium vinosum. J. Bacteriol. 173, 5224-5229.
    • (1991) J. Bacteriol. , vol.173 , pp. 5224-5229
    • Viale, A.M.1    Kobayashi, H.2    Akazawa, T.3    Henikoff, S.4
  • 100
    • 0026515403 scopus 로고
    • Opine catabolism and conjugal transfer of the nopaline Ti plasmid pTiC58 are coordinately regulated by a single repressor
    • VON BODMAN, S. B., HAYMAN, G. T. & FARRAND, S. K. (1992). Opine catabolism and conjugal transfer of the nopaline Ti plasmid pTiC58 are coordinately regulated by a single repressor. Proc. Natl. Acad. Sci. U.S.A. 89, 643-647.
    • (1992) Proc. Natl. Acad. Sci. U.S.A. , vol.89 , pp. 643-647
    • Von Bodman, S.B.1    Hayman, G.T.2    Farrand, S.K.3
  • 101
    • 0029074668 scopus 로고
    • A comprehensive representation of extensive similarity linkage between large number of proteins
    • WATANABE, H. & OTSUKA, J. (1995). A comprehensive representation of extensive similarity linkage between large number of proteins. Comput. Applic. Biosci. 11, 159-166.
    • (1995) Comput. Applic. Biosci. , vol.11 , pp. 159-166
    • Watanabe, H.1    Otsuka, J.2
  • 102
    • 0026724966 scopus 로고
    • A family of bacterial regulators homologous to Gal and Lac repressors
    • WEICKERT, M. J. & ADHYA, S. (1992). A family of bacterial regulators homologous to Gal and Lac repressors. J. Biol. Chem. 267, 15869-15874.
    • (1992) J. Biol. Chem. , vol.267 , pp. 15869-15874
    • Weickert, M.J.1    Adhya, S.2
  • 103
    • 0025815203 scopus 로고
    • Regulation of methionine synthesis in Escherichia coli
    • WEISSBACH, H. & BROT, N. (1991). Regulation of methionine synthesis in Escherichia coli. Mol. Microbiol. 5, 1593-1597.
    • (1991) Mol. Microbiol. , vol.5 , pp. 1593-1597
    • Weissbach, H.1    Brot, N.2
  • 104
    • 0025730904 scopus 로고
    • Characterization of Lrp, an Escherichia coli regulatory protein that mediates a global response to leucine
    • WILLINS, D. A., RYAN, C. W., PLATKO, J. V. & CALVO, J. M. (1991). Characterization of Lrp, an Escherichia coli regulatory protein that mediates a global response to leucine. J. Biol. Chem. 266, 10768-10774.
    • (1991) J. Biol. Chem. , vol.266 , pp. 10768-10774
    • Willins, D.A.1    Ryan, C.W.2    Platko, J.V.3    Calvo, J.M.4
  • 105
    • 0028263372 scopus 로고
    • Ligand-induced self-association of the Escherichia coli regulatory protein TyrR
    • WILSON, T. J., MAROUDAS, P., HOWLETT, G. T. & DAVIDSON, B. E. (1994). Ligand-induced self-association of the Escherichia coli regulatory protein TyrR. J. Mol. Biol. 238, 309-318.
    • (1994) J. Mol. Biol. , vol.238 , pp. 309-318
    • Wilson, T.J.1    Maroudas, P.2    Howlett, G.T.3    Davidson, B.E.4
  • 106
    • 0025299367 scopus 로고
    • Role of the purine repressor in the regulation of pyrimidine gene expression in Escherichia coli K-12
    • WILSON, H. R. & TURNBOUGH, C. L., JR. (1990). Role of the purine repressor in the regulation of pyrimidine gene expression in Escherichia coli K-12. J. Bacteriol. 172, 3208-3213.
    • (1990) J. Bacteriol. , vol.172 , pp. 3208-3213
    • Wilson, H.R.1    Turnbough C.L., Jr.2
  • 107
    • 0001771498 scopus 로고
    • Evolution in mendelian populations
    • WRIGHT, S. (1931). Evolution in Mendelian populations. Genetics 16, 97-159.
    • (1931) Genetics , vol.16 , pp. 97-159
    • Wright, S.1
  • 108
    • 0025893245 scopus 로고
    • Downstream deletion analysis of the lac promoter
    • XIONG, X., DE LA CRUZ, N. & REZNIKOFF, W. S. (1991). Downstream deletion analysis of the lac promoter. J. Bacteriol. 173, 4570-4577.
    • (1991) J. Bacteriol. , vol.173 , pp. 4570-4577
    • Xiong, X.1    De La Cruz, N.2    Reznikoff, W.S.3
  • 109
    • 0018897011 scopus 로고
    • In vitro expression of Escherichia coli ribosomal protein genes: Autogenous inhibition of translation
    • YATES, J. L., ARFSTEN, A. E. & NOMURA, M. (1980). In vitro expression of Escherichia coli ribosomal protein genes: Autogenous inhibition of translation. Proc. natl. Acad. Sci. U.S.A. 77, 1837-1841.
    • (1980) Proc. Natl. Acad. Sci. U.S.A. , vol.77 , pp. 1837-1841
    • Yates, J.L.1    Arfsten, A.E.2    Nomura, M.3
  • 110
    • 0001895697 scopus 로고
    • Evolutionary divergence and convergence in proteins
    • Bryson, V. & Vogel, H. J., eds, New York: Academic Press
    • ZUCKERKANDL, E. & PAULING, L. (1965). Evolutionary divergence and convergence in proteins. In: Evolving Genes and Proteins (Bryson, V. & Vogel, H. J., eds), p. 97. New York: Academic Press.
    • (1965) Evolving Genes and Proteins , pp. 97
    • Zuckerkandl, E.1    Pauling, L.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.