Fastalert-an automatic search system to alert about new entries in biological sequence databanks

Bioinformatics

Volumn 12, Issue 2, 1996, Pages 129-133

  Eggenberger, F ^a   Redaschi, N ^a   Doelz, R ^a  

^a UNIVERSITY OF BASEL   (Switzerland)

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; AUTOMATION; DATA BASE; INFORMATION PROCESSING; PRIORITY JOURNAL; SEQUENCE ANALYSIS;

AMINO ACID SEQUENCE; BASE SEQUENCE; COMPUTER COMMUNICATION NETWORKS; COMPUTER SYSTEMS; DATABASES, FACTUAL; INFORMATION STORAGE AND RETRIEVAL; SEQUENCE ALIGNMENT; SOFTWARE; SOFTWARE DESIGN;

EID: 0029950975     PISSN: 13674803     EISSN: 14602059     Source Type: Journal    
DOI: 10.1093/bioinformatics/12.2.129     Document Type: Article

References (17)

1. Alard, P. (1995) CSA and CSSA, BEN's new sequence arrival warning tools. Embnet.news 2, 1-2. Available via anonymous FTP from: ftp.no.embnet.org in the directory pub/embnet.news/.
2. Altschul, S.F., Gish.W. Miller, W., Myers.E.W. and Lipman, D.J. (1990) Basic Local Alignment Search Tool. J. Mol. Biol., 215, 403-410.
3. Altschul.S.F., Boguski, M.S. Gish, W. and Wooton.J.C. (1994) Issues in searching molecular sequence databases. Nature Genetics, 6, 119-129.
4. Bairoch, A. and Boeckmann, B. (1993) The SWISS-PROT protein sequence data bank, recent developments, Nucleic Acids Res, 21, 3093-3096.
5. Doelz, R. (1993) The EMBnet Project. Computer Networks and ISDN Systems, 25, 464-468.
6. Doelz, R. (1994) Hierarchical access system for sequence libraries in Europe (HASSLE): a tool to access sequence databases remotely. Compul. Applic. Biosci., 10, 31-34.
7. Doelz.R. (1995) Biology and networks: new tools to manage distributed resources. Computer Networks and ISDN Systems, 26 (Suppl. 4), 157-162.
8. Doelz.R., Eggenberger, F. and Wadley, C. (1994) Biocomputing on a server network. Embnet.news 1, 6-8. Available via anonymous FTP from: ftp.no.embnet.org in the directory pub/embnet.news/.
9. Genetics Computer Group, Inc. (1994) Program Manual for the Wisconsin Package, Version 8.
10. Higgins, D.G., Fuchs, R., Stoehr, P.J. and Cameron.G.N. (1992) The EMBL Data Library, Nucleic Acids Res., 20, 2071-2074.
11. Leong.K., Law, W., Love.R., Tsuji.H. and Oson, B. (1995) OS/2 Class Library: Power GUI Programming with C Set++. Van Nostrand Reinhold, New York.
12. Lipman, D.J. and Pearson, W.R. (1985) Rapid and sensitive protein similarity searches. Science, 227, 1435-1441.
13. Ostell.J. (1993) NCBI Software Development ToolK.it. Available by anonymous FTP from the National Center for Biotechnology Information at ncbi.nlm.nih.gov.
14. Pearson, W.R. and Lipman.D.J. (1988) Improved tools for biological sequence comparison. Proc. Nail Acad. Sci. USA, 85, 2444-2448.
15. Peitsch.M. (1995) The Swiss-Shop BioComputing Server. Accessible via WWW at the URL http://expasy.hcuge.ch/swisshop/SwissSho-pReq.html
16. Redaschi.N., Doelz.R. and Eggenberger, F. (1995) Advanced Computer Network Communication: Hierarchical Access System for Sequence Libraries in Europe (HASSLE v5). Dr. U. Dolz Verlag, Basel.
17. Rice, C.M., Fuchs.R., Higgins, D.G., Stoehr, P.J. and Cameron.G.N. (1993) The EMBL data library, Nucleic Acids Res., 21, 2967-1971.