Cloning and sequencing of a 40.6 kb segment in the 73°-76° region of the Bacillus subtilis chromosome containing genes for trehalose metabolism and acetoin utilization

Microbiology

Volumn 142, Issue 11, 1996, Pages 3057-3065

  Yamamoto, Hiroki ^a   Uchiyama, Shigeki ^a   Sekiguchi, Junichi ^a  

^a SHINSHU UNIVERSITY   (Japan)

Author keywords

Acetoin utilization; Bacillus subtilis; Genome sequencing; tre locus

Indexed keywords

5' NUCLEOTIDASE; ACETOIN; CYCLIC NUCLEOTIDE PHOSPHODIESTERASE; DEOXYRIBONUCLEASE; GLYCOSIDASE; HYDROLASE; OXIDOREDUCTASE; PHOSPHOPROTEIN PHOSPHATASE; TREHALOSE;

ARTICLE; BACILLUS SUBTILIS; BACTERIAL GENE; CARBOHYDRATE METABOLISM; GENE SEQUENCE; MOLECULAR CLONING; MULTIDRUG RESISTANCE; NONHUMAN; NUCLEOTIDE SEQUENCE; OPEN READING FRAME; OPERON; PRIORITY JOURNAL; REPRESSOR GENE; SEQUENCE HOMOLOGY;

BACILLUS SUBTILIS; BACTERIA (MICROORGANISMS);

EID: 0029946478     PISSN: 13500872     EISSN: None     Source Type: Journal    
DOI: 10.1099/13500872-142-11-3057     Document Type: Article

References (37)

1. Ahmed, M., Borsch, C. M., Taylor, S. S., Vázquez-Laslop, N. & Neyfakh, A. A. (1994). A protein that activates expression of a multidrug efflux transporter upon binding the transporter substrates. J Biol Chem 269, 28506-28513.
2. Ahmed, M., Lyass, L., Markham, P. N., Taylor, S. S., Vázquez-Laslop, N. & Neyfakh, A. A. (1995). Two highly similar multidrug transporters of Bacillus subtilis whose expression is differentially regulated. J Bacteriol 177, 3904-3910.
3. Borchardt, S. A., Babwah, A. V. & Jayaswal, R. K. (1993). Sequence analysis of the region downstream from a peptidoglycan hydrolase-encoding gene from Staphylococcus aureus NCTC8325. Gene 137, 253-258.
4. Borges, A., Hawkins, C. F., Packman, L. C. & Perham, R. N. (1990). Cloning and sequence analysis of the genes encoding the dihydrolipoamide acetyltransferase and dihydrolipoamide dehydrogenase components of the pyruvate dehydrogenase multienzyme complex of Bacillus stearothermophilus. Eur J Biochem 194, 95-102.
5. Deng, W. L., Chang, H. Y. & Peng, H. L. (1994). Acetoin catabolic system of Klebsiella pneumoniae CG43: sequence, expression and organization of the aco operon. J Bacteriol 176, 3527-3535.
6. Dissing, J. & Johnsen, A. H. (1992). Human red cell acid phosphatase (ACP1): the primary structure of the two pairs of isozymes encoded by the ACP1*A and ACP1*C alleles. Biochim Biophys Acta 1121, 261-268.
7. Fernandez, R. C. & Weiss, A. A. (1994). Cloning and sequencing of a Bordetella pertussis serum resistance locus. Infect Immun 62, 4727-4738.
8. Fleischmann, R. D. and others (1995). Whole-genome random sequencing and assembly of Haemophilus influenzae Rd. Science 269, 496-512.
9. Grundy, F. J., Waters, D. A., Takova, T. Y. & Henkin, T. M. (1993). Identification of genes involved in utilization of acetate and acetoin in Bacillus subtilis. Mol Microbiol 10, 259-271.
10. Helfert, C., Gotsche, S. & Dahl, M. K. (1995). Cleavage of trehalose-phosphate in Bacillus subtilis is catalysed by a phospho-α-(1-1)-glucosidase encoded by the treA gene. Mol Microbiol 16, 111-120.
11. Hemilä, H. (1991). Lipoamide dehydrogenase of Staphylococcus aureus: nucleotide sequence and sequence analysis. Biochim Biophys Acta 1129, 119-123.
12. Hemilä, H., Palva, A., Paulin, L., Arvidson, S. & Palva, I. (1990). Secretory S complex of Bacillus subtilis: sequence analysis and identity to pyruvate dehydrogenase. J Bacteriol 172, 5052-5063.
13. Itaya, M. & Tanaka, T. (1991). Complete physical map of the Bacillus subtilis 168 chromosome constructed by a gene-directed mutagenesis method. J Mol Biol 220, 631-648.
14. + antiporter-deficient strains by the overexpressed gene. J Biol Chem 268, 11296-11303.
15. Krüger, N., Oppermann, F. B., Lorenzl, H. & Steinbüchel, A. (1994). Biochemical and molecular characterization of the Clostridium magnum acetoin dehydrogenase enzyme system. J Bacteriol 176, 3614-3630.
16. Liu, J., Burns, D. M. & Beacham, I. R. (1986). Isolation and sequence analysis of the gene (cpdB) encoding periplasmic 2′, 3′-cyclic phosphodiesterase. J Bacteriol 165, 1002-1010.
17. Lopez, J. M., Thoms, B. & Rehbein, H. (1975). Acetoin degradation in Bacillus subtilis by direct oxidative cleavage. Eur J Biochem 57, 425-430.
18. Machado, H. B., Yates, M. G., Funayama, S., Rigo, L. U., Steffens, M. B. R., Souza, E. M. & Pedrosa, F. O. (1995). The ntrBC genes of Azospirillum brasilense are part of a nifR3-like-ntrB-ntrC operon and are negatively regulated. Can J Microbiol 41, 674-684.
19. r phosphotyrosine protein phosphatase isoenzymes: purification and amino acid sequences. J Protein Chem 11, 333-345.
20. Misumi, Y., Ogata, S., Hirose, S. & Ikehara, Y. (1990a). Primary structure of rat liver 5′-nucleotidase deduced from the cDNA. Presence of the COOH-terminal hydrophobic domain for possible post-translational modification by glycophospholipid. J Biol Chem 265, 2178-2183.
21. Misumi, Y., Ogata, S., Ohkubo, K., Hirose, S. & Ikehara, Y. (1990b). Primary structure of human placental 5′-nucleotidase and identification of the glycolipid anchor in the mature form. Eur J Biochem 191, 563-569.
22. Mondesert, O., Moreno, S. & Russell, P. (1994). Low molecular weight protein-tyrosine phosphatases are highly conserved between fission yeast and man. J Biol Chem 269, 27996-27999.
23. Morohoshi, F., Hayashi, K. & Munakata, N. (1993). Bacillus subtilis alkA gene encoding inducible 3-methyladenine DNA glycosylase is adjacent to the ada operon. J Bacteriol 175, 6010-6017.
24. Oppermann, F. B. & Steinbüchel, A. (1994). Identification and molecular characterization of the aco genes encoding the Pelobacter carbinolicus acetoin dehydrogenase enzyme system. J Bacteriol 176, 469-485.
25. Priefert, H., Hein, S., Krüger, N., Zeh, K., Schmidt B. & Steinbuchel, A. (1991). Identification and molecular characterization of the Alcaligenes eutrophus H16 aco operon genes involved in acetoin catabolism. J Bacteriol 173, 4056-4071.
26. Reaney, S. K., Bungard, S. J. & Guest, J. R. (1993). Molecular and enzymological evidence for two classes of fumarase in Bacillus stearothermophilus (var. non-diastaticus). J Gen Microbiol 139, 403-416.
27. Rossen, L., Johnston, A. W. B. & Downie, J. A. (1984). DNA sequence of the Rhizobium leguminosarum nodulation genes nodAB and C required for root hair curling. Nucleic Acids Res 12, 9497-9508.
28. Rougraff, P. M., Zhang, B., Kuntz, M. J., Harris, R. A. & Crabb, D. W. (1989). Cloning and sequence analysis of a cDNA for 3-hydroxyisobutyrate dehydrogenase. Evidence for its evolutionary relationship to other pyridine nucleotide-dependent dehydrogenases. J Biol Chem 264, 5899-5903.
29. Sambrook, J., Fritsch, E. F. & Maniatis, T. (1989). Molecular Cloning: a Laboratory Manual. Cold Spring Harbor, NY: Cold Spring Harbor Laboratory.
30. Tre and a potential regulator of the trehalose operon. Gene (in press).
31. Sekiguchi, J., Ezaki, B., Kodama, K. & Akamatsu, T. (1988). Molecular cloning of a gene affecting the autolysin level and flagellation in Bacillus subtilis. J Gen Microbiol 134, 1611-1621.
32. Spencer, M. E., Darlison, M. G., Stephens, P. E., Duckenfield, I. K. & Guest, J. R. (1984). Nucleotide sequence of the sucB gene encoding the dihydrolipoamide succinyltransferase of Escherichia coli K12 and homology with the corresponding acetyltransferase. Eur J Biochem 141, 361-374.
33. Steele, M. I., Lorenz, D., Hatter, K., Park, A. & Sokatch, J. R. (1992). Characterization of the mmsAB operon of Pseudomonas aeruginosa PAO encoding methylmalonate-semialdehyde dehydrogenase and 3-hydroxyisobutyrate dehydrogenase. J Biol Chem 267, 13585-13592.
34. Suzuki, K., Furukawa, Y., Tamura, H., Ejiri, N., Suematsu, H., Taguchi, R., Nakamura, S., Suzuki, Y. & Ikezawa, H. (1993). Purification and cDNA cloning of bovine liver 5′-nucleotidase, a GPI-anchored protein and its expression in COS cells. J Biochem 113, 607-613.
35. Van Vliet-Reedijk, J. C. & Planta, R. J. (1993). The RHO4a and NUDI genes on Saccharomyces cerevisiae chromosome XI. Yeast 9, 1139-1147.
36. Volknandt, W., Vogel, M., Pevsner, J., Misumi, Y., Ikehara, Y. & Zimmermann, H. (1991). 5′-Nucleotidase from the electric ray electric lobe. Primary structure and relation to mammalian and procaryotic enzymes. Eur J Biochem 202, 855-861.
37. Yamamoto, H., Uchiyama, S., Fajar, A. N., Ogasawara, N. & Sekiguchi, J. (1996). Determination of a 12 kb nucleotide sequence around the 76° region of the Bacillus subtilis chromosome. Microbiology 142, 1417-1421.