The ndh-binding protein (Nbp) regulates the ndh gene of Escherichia coli in response to growth phase and is identical to Fis

Molecular Microbiology

Volumn 20, Issue 5, 1996, Pages 1043-1055

  Green, J ^a   Anjum, M F ^a   Guest, J R ^a  

^a UNIVERSITY OF SHEFFIELD   (United Kingdom)

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL RNA; DNA BINDING PROTEIN; REDUCED NICOTINAMIDE ADENINE DINUCLEOTIDE DEHYDROGENASE;

ANAEROBIC GROWTH; ARTICLE; BACTERIAL GROWTH; BINDING SITE; DNA FOOTPRINTING; ESCHERICHIA COLI; GENE EXPRESSION REGULATION; GROWTH REGULATION; NONHUMAN; PRIORITY JOURNAL; PROTEIN DETERMINATION; PROTEIN DNA BINDING; PROTEIN PURIFICATION; TRANSCRIPTION REGULATION;

BASE SEQUENCE; CARRIER PROTEINS; DNA, BACTERIAL; DNA-BINDING PROTEINS; DOSE-RESPONSE RELATIONSHIP, DRUG; ESCHERICHIA COLI; ESCHERICHIA COLI PROTEINS; FACTOR FOR INVERSION STIMULATION PROTEIN; GENE EXPRESSION REGULATION; INTEGRATION HOST FACTORS; MOLECULAR SEQUENCE DATA; NADH DEHYDROGENASE; PROMOTER REGIONS (GENETICS);

BACTERIA (MICROORGANISMS); ESCHERICHIA COLI;

EID: 0029938543     PISSN: 0950382X     EISSN: None     Source Type: Journal    
DOI: 10.1111/j.1365-2958.1996.tb02545.x     Document Type: Article

References (42)

1. Ball, C.A., Osuna, R., Ferguson, K.C., and Johnson, R.C. (1992) Dramatic changes in Fis levels upon nutrient upshift in Escherichia coli. J Bacteriol 174: 8043-8056.
2. Bradford, M.M. (1976) A rapid and sensitive method for the quantitation of microgram quantities of protein utilising the principle of protein-dye binding. Anal Biochem 72: 248-254.
3. Cain, B.D., Norton, P.J., Eubanks, W., Nick, H.S., and Allen, C.M. (1993) Amplification of the bacA gene confers bacitracin resistance to Escherichia coli. J Bacteriol 175: 3784-3789.
4. Calhoun, M.W., and Gennis, R.B. (1993) Demonstration of separate genetic loci encoding distinct membrane bound respiratory NADH dehydrogenases in Escherichia coli. J Bacteriol 175: 3013-3019.
5. Calhoun, M.W., Oden, K.L., Gennis, R.B., Teixeirade Mattos, M.J., and Neijssel, O.M. (1993) Energetic efficiency of Escherichia coli: effects of mutations in components of the aerobic respiratory chain. J Bacteriol 175: 3020-3025.
6. Cedar, H., and Schwartz, J.H. (1968) Production of L-asparaginase II by Escherichia coli. J Bacteriol 96: 2043-2048.
7. Davies, R.W. (1988) DNA sequencing. In Gel Electrophoresis of Nucleic Acids. Rickwood, D., and Hames, B.D. (eds). Oxford: IRL Press, pp. 164-165.
8. Dri, A.-M., Rouviere-Yaniv, J., and Moreau, P.L. (1991) Inhibition of cell division in hupAhupB mutant bacteria lacking HU protein. J Bacteriol 173: 2852-2863.
9. Drlica, K., and Rouviere-Yaniv, J. (1989) Histone-like proteins of bacteria. FEMS Microbiol Rev 51: 301-319.
10. Finkel, S.E., and Johnson, R.C. (1992) The Fis protein: it's not just for DNA inversion anymore. Mol Microbiol 6: 3257-3265.
11. Green, J., and Guest, J.R. (1994) Regulation of transcription at the ndh promoter of Escherichia coli by FNR and novel factors. Mol Microbiol 12: 433-444.
12. Green, J., Trageser, M., Six, S., Unden, G., and Guest, J.R. (1991) Characterization of the FNR protein of Escherichia coli, an iron binding transcriptional regulator. Proc Roy Soc B 244: 137-144.
13. Green, J., Sharrocks, A.D., Green, B., Geisow, M., and Guest, J.R. (1993) Properties of FNR proteins substituted at each of the five cysteine residues. Mol Microbiol 8: 61-68.
14. Green, J., Irvine, A.S., Meng, W., and Guest, J.R. (1996) FNR DNA interactions at natural and semi-synthetic promoters. Mol Microbiol 14: 125-137.
15. Hayashi, M., Miyoshi, T., Takashina, S., and Unemoto, T. (1989) Purification of NADH-ferricyanide dehydrogenase and NADH-quinone reductase from Escherichia coli membranes and their roles in the respiratory chain. Biochim Biophys Acta 977: 62-69.
16. Jennings, M.P., and Beacham, I.R. (1993) Co-dependent positive regulation of the ansB promoter of Escherichia coli by CRP and the FNR protein-a molecular analysis. Mol Microbiol 9: 155-164.
17. Johnson, R.C., Ball, C.A., Pfeffer, D., and Simon M.I. (1988) Isolation of the gene encoding the Hin recombinatorial enhancer binding protein. Proc Natl Acad Sci USA 85: 3484-3488.
18. Kajitani, M., and Ishihama, A. (1991) Identification and sequence determination of the host factor gene for bacteriophage Q. Nucl Acids Res 19: 1063-1066.
19. Kajitani, M., Kato, A., Wada, A., Inokuchi, Y., and Ishihama, A. (1994) Regulation of the Escherichia coli hfq gene encoding the host factor for phage Q. J Bacteriol 176: 531-534.
20. Khoroshilova, N., Beinert, H., and Kiley, P.J. (1995) Association of a polynuclear iron-sulphur center with a mutant FNR protein enhances DNA binding. Proc Natl Acad Sci USA 92: 2499-2505.
21. Koch, C., and Kahmann, R. (1986) Purification and properties of the Escherichia coli host factor required for inversion of the G segment in bacteriophage Mu. J Bioi Chem 261: 15673-15678.
22. Matsushita, K., Ohnishi, T., and Kaback, H.R. (1987) NADH-ubiquinone oxidoreductases of the Escherichia coli aerobic respiratory chain. Biochemistry 26: 7732-7737.
23. Miller, J.H. (1972) Experiments in Molecular Genetics. Cold Spring Harbor, New York: Cold Spring Harbor Laboratory Press.
24. Miller, J.H. (1992) A Short Course in Bacterial Genetics. Cold Spring Harbor, New York: Cold Spring Harbor Laboratory Press.
25. Muskhelishvili, G., Travers, A.A., Heumann, H., and Kahmann, R. (1995) Fis and RNA polymerase holoenzyme form a specific nucleoprotein complex at a stable RNA promoter. EMBO J 14: 1446-1452.
26. Ninnemann, O., Koch, C., and Kahmann, R. (1992) The E. coli fis promoter is subject to stringent control and autoregulation. EMBO J 11: 1075-1083.
27. Osuna, R., Finkel, S.E., and Johnson, R.C. (1991) Identification of two functional regions in Fis: the N-terminus is required to promote Hin-mediated DNA inversion but not excision. EMBO J 10: 1593-1603.
28. Reaney, S.K., Begg, C., Bungard, S.J., and Guest, J.R. (1993) Identification of the L-tartrate dehydratase genes (ttdA and ttdB) of Escherichia coli and evolutionary relationship with the Class I fumarase genes. J Gen Microbiol 139: 1523-1530.
29. Rhodes, D. (1989) Analysis of sequence-specific DNA-binding proteins. In Protein Function. Creighton, T. (ed.), Oxford: IRL Press, pp. 186-195.
30. 4 as a probe for lac promoter DNA melting and mechanism in vivo. J Biol Chem 265: 8074-8081.
31. Sharrocks, A.D., Green, J., and Guest, J.R. (1990) In vivo and in vitro mutants of FNR, the anaerobic transcriptional regulator of E. coli. FEBS Lett 270: 119-122.
32. Sharrocks, A.D., Green, J., and Guest, J.R. (1991) FNR activates and represses transcription in vitro. Proc Roy Soc B 245: 219-226.
33. Spiro, S., and Guest, J.R. (1990) FNR and its role in oxygen-regulated gene expression in Escherichia coli. FEMS Microbiol Rev 75: 399-428.
34. Spiro, S., Roberts, R.E., and Guest, J.R. (1989) FNR-dependent repression of the ndh gene of Escherichia coli and metal ion requirement for FNR-regulated gene expression. Mol Microbiol 3: 601-608.
35. Takahashi, K., Hattori, T., Nakianishi, T., Nohno, T., Fujita, N., Ishihama, A., and Taniguchi, S. (1994) Repression of in vitro transcription of the Escherichia coli fnr and narX genes by FNR protein. FEBS Lett 340: 59-64.
36. Tsui, H.-C.T., Leung, H-C.E., and Winkler, M. E. (1994) Characterization of broadly pleiotropic phenotypes caused by an hfq insertion mutation in Escherichia coli K-12. Mol Microbiol 13: 35-49.
37. Unden, G., Becker, S., Bongaerts, J., Schirawski, J., and Six, S. (1994) Oxygen regulated gene expression in facultatively anaerobic bacteria. Antonie van Leeuwenhoek 66: 3-23.
38. Weidner, U., Nehls, U., Schneider, R., Fecke, W., Leif, H., Schmiede, A., Friedrich, T., Zensen, R., Schulte, U., Ohnishi, T., and Weiss H. (1992) Molecular genetic studies of complex I in Neurospora crassa, Aspergillus niger and Escherichia coli. Biochim Biophys Acta 1101: 177-180.
39. Weidner, U., Geier, S., Ptock, A., Friedrich, T., Leif, H., and Weiss, H. (1993) The gene locus of the proton translocating NADH:ubiquinone oxidoreductase in Escherichia coli. organisation of the 14 genes and relationship of the derived proteins with subunits of the mitochondrial complex I. J Mol Biol 233: 109-122.
40. Wray, W., Boulikas, T., Wray, V.P., and Hancock, R. (1981) Silver staining of proteins in polyacrylamide gels. Anal Biochem 118: 197-203.
41. Young, I.G., Rogers, B.L. Campbell, H.D., Jaworowski, A., and Shaw, D.D. (1981) Nucleotide sequence for the respiratory NADH dehydrogenase of Escherichia coli. Eur J Biochem 116: 165-170.
42. Xu, J.M., and Johnson, R.C. (1995) Identification of genes negatively regulated by Fis: Fis and RpoS co-modulate growth-phase-dependent gene expression in Escherichia coli. J Bacteriol 177: 938-947.