Molecular-size corrections to the strength of the hydrophobic effect: A critical review

European Biophysics Journal

Volumn 24, Issue 4, 1996, Pages 261-274

  Sanchez Ruiz, Jose M ^a  

^a UNIVERSITY OF GRANADA   (Spain)

Author keywords

hydrophobic effect; molecular size corrections

Indexed keywords

DISSOLUTION; REVIEW; THERMODYNAMICS;

EID: 0029932338     PISSN: 01757571     EISSN: None     Source Type: Journal    
DOI: 10.1007/BF00205107     Document Type: Review

References (52)

1. Abraham MH, Sakellariou P (1994) The Honig-Flory-Huggins Entropy correction-Is it valid for aqueous solutions? J Chem Soc Perkin Trans 2:405-406
2. Baker D, Chan HS, Dill KA (1993) Coordinate space formulation of polymer lattice cluster theory. J Chem Phys 98:9951-9962
3. Ben-Naim A (1978) Standard thermodynamics of transfer. Uses and misuses. J Phys Chem 82:792-803
4. Ben-Naim A (1987) Is mixing a thermodynamic process? Am J Phys 55:725-733
5. Ben-Naim A (1990) Solvent effects on protein association and protein folding. Biopolymers 29:567-596
6. Ben-Naim A (1992) Statistical thermodynamics for chemists and biochemists. Plenum Press, New York London
7. Ben-Naim A (1994) Solvation of large molecules: some exact results on the dependence on volume and surface area of the solute. Biophys Chem 51:203-216
8. Ben-Naim A, Mazo RM (1993) Size dependence of the solvation free energies of large solutes. J Phys Chem 97:10829-10834
9. Blokzijl W, Engberts JBFN (1993) Hydrophobie effects. Opinions and facts. Angew Chem Int Ed Engl 32:1545-1579
10. Chan HS, Dill KA (1994) Solvation: effects of molecular size and shape. J Chem Phys 101:7007-7026
11. Creighton TE (1991) Stability of folded conformations. Current Opin Struct Biol 1:5-16
12. De Young L, Dill KA (1990) Partitioning of nonpolar solutes into bilayers and amorphous n-alkanes. J Phys Chem 94:801-809
13. Denbigh K (1981) The principles of chemical equilibrium, 4th edn. Cambridge University Press, Cambridge
14. Dill KA (1990) Dominant forces in protein folding. Biochemistry 29:7133-7155
15. Fauchere JL, Pliska VE (1983) Hydrophobie parameters of amino-acid side-chains from the partitioning of N-acetyl-amino-acid amines. Eur J Med Chem 18:369-375
16. Flory PJ (1941) Thermodynamics of high polymer solutions. J Chem Phys 9:660-661
17. Freed KF (1985) New lattice model for interacting, avoiding polymers with controlled length distribution. J Phys A 18:871-887
18. Freed KF, Bawendi MG (1989) Lattice theories of polymeric fluids. J Phys Chem 93:2194-2203
19. Giesen DJ, Cramer CJ, Truhlar DG (1994) Entropie contributions to free energies of solvation. J Phys Chem 98:4141-4147
20. Hermann RB (1972) Theory of hydrophobic bonding. II The correlation of hydrocarbon solubility in water with solvent cavity surface area. J Phys Chem 76:2754-2759
21. Hill TL (1956) Statistical mechanics. Principles and selected applications. McGraw-Hill, New York
22. Holtzer A (1992) The use of Flory-Huggins theory in interpreting partitioning of solutes between organic liquids and water. Biopolymers 32:711-715
23. Huggins ML (1941) Solutions of long chain compounds. J Chem Phys 9:440-449
24. Lazaridis T, Paulaities ME (1992) Entropy of hydrophobic hydration: a new statistical mechanical formulation. J Phys Chem 96:3847-3855
25. Lazaridis T, Paulaities ME (1993) Reply to the comment on "Entropy of hydrophobic hydration: a new statistical mechanical formulation". J Phys Chem 97:5789-5790
26. Lee B (1994) Relation between volume correction and the standard state. Biophys Chem 51:263-269
27. Levitt M, Perutz MF (1988) Aromatic rings act as hydrogen bonds acceptors. J Mol Biol 201:751-754
28. Makhatadze GI, Privalov PL (1990) Heat capacity of proteins. I. Partial molar heat capacity of individual amino acid residues in aqueous solutions. Hydration effect. J Mol Biol 213:375-384
29. Makhatadze GI, Privalov PL (1993) Contribution of hydration to protein folding thermodynamics. I. The enthalpy of hydration. J Mol Biol 232:639-659
30. Makhatadze GI, Privalov PL (1994) Hydration effects in protein unfolding. Biophys Chem 51:291-309
31. Makhatadze GI, Privalov PL (1995) Energetics of protein structure. Adv Prot Chem (in press)
32. Murphy KP, Gill SJ (1991) Solid model compounds and the thermodynamics of protein unfolding. J Mol Biol 222:699-709
33. Perkyns J, Pettitt BM (1994a) Integral equation approaches to structure and thermodynamics of aqueous salt solutions. Biophys Chem 51:129-146
34. Perkyns J, Pettitt BM (1994b) Discussion to the paper to by A. Ben-Naim. Biophys Chem 51:214
35. Privalov PL, Gill SJ (1988) Stability of protein structure and hydrophobic interaction. Adv Prot Chem 39:191-234
36. Privalov PL, Makhatadze GI (1990) Heat capacity of proteins. II. Partial molar heat capacity of the unfolded polypeptide chain of proteins. J Mol Biol 213:385-391
37. Privalov PL, Makhatadze GI (1992) Contribution of hydration and non-covalent interactions to the heat capacity effect on protein unfolding. J Mol Biol 224:715-723
38. Privalov PL, Makhatadze GI (1993) Contribution of hydration to protein folding thermodynamics. II. The entropy of hydration. J Mol Biol 232:660-679
39. Rashin AA (1993) Aspects of protein energetics and dynamics. Prog Biophys Mol Biol 60:73-200
40. Rashin AA, Bukatin MA (1994a) Magnitude of hydration entropies of nonpolar and polar molecules. J Phys Chem 98:386-389
41. Rashin AA, Bukatin MA (1994b) A view of thermodynamics of hydration emerging from continuum models. Biophys Chem 51: 167-192
42. Rodham DA, Suzuki S, Suenram RD, Lovas FJ, Dasgupta S, Goddard WA, Blake GA (1993) Hydrogen bonding in the benzene-ammonia dimer. Nature 362:735-737
43. Sharp KA (1991) The hydrophobic effect. Current Opin Struct Biol 1:171-174
44. Sharp KA, Nicholls A, Fine RF, Honig B (1991a) Reconciling the magnitude of the microscopic and macroscopic hydrophobic effects. Science 252:106-109
45. Sharp KA, Nicholls A, Friedman R, Honig B (1991b) Extracting hydrophobic free energies from experimental data: relationship to protein folding and theoretical models. Biochemistry 30:9686-9697
46. Simonson T, Brunger AT (1994) Solvation free energies estimated from macroscopic continuum models: an accuracy assessment. J Phys Chem 98:4683-4694
47. Sitkoff D, Sharp K, Honig B (1994) Correlating solvation free energies and surface tensions of hydrocarbon solutes. Biophys Chem 51:397-409
48. Smith DE, Brian BL, Haymet ADJ (1993) Comment on "Entropy of hydrophobic hydration: a new statistical mechanical formulation". J Phys Chem 97:5788
49. Sun Y, Spellmeyer D, Pearlman DA, Kollman P (1992) Simulation of the solvation free energies for methane, ethane, and propane and corresponding amino acid dipeptides: a critical test of the "bond-PMF" correction, a new set of hydrocarbon parameters, and the gas phase-water hydrophobicity scale. J Am Chem Soc 114:6798-6801
50. Suzuki S, Green PG, Bumgarner RE, Dasgupta S, Goddard WA, Blake GA (1992) Benzene forms hydrogen bonds with water. Science 257:942-945
51. Tunon I, Silla E, Pascual-Ahuir JL (1993) Continuum-uniform approach calculations of the solubility of hydrocarbons in water. Chem Phys Lett 203:289-294
52. Tuñon I, Silla E, Pascual-Ahuir JL(1994) Evaluation of transfer energies. J Phys Chem 98:377-379