Recognition of transmembrane α-helical segments with environmental profiles

Protein Engineering

Volumn 9, Issue 3, 1996, Pages 253-263

  Efremov, Roman G ^a,b   Vergoten, Gérard ^b  

^a SHEMYAKIN OVCHINNIKOV INSTITUTE OF BIOORGANIC CHEMISTRY   (Russian Federation)

^b UNIV LILLE   (France)

Author keywords

3 D profile method; Hydrophobic organization; Integral membrane proteins; Molecular modeling; Structure prediction

Indexed keywords

BACTERIORHODOPSIN; GLOBULAR PROTEIN; MEMBRANE PROTEIN;

ALGORITHM; ALPHA HELIX; AMINO ACID SEQUENCE; ARTICLE; BLASTOCHLORIS VIRIDIS; DATA BASE; ENVIRONMENT; NONHUMAN; PHOTOREACTIVITY; PRIORITY JOURNAL; PROTEIN TERTIARY STRUCTURE; RHODOBACTER SPHAEROIDES; SEQUENCE HOMOLOGY;

BLASTOCHLORIS VIRIDIS; RHODOBACTER SPHAEROIDES; RHODOPSEUDOMONAS;

EID: 0029932148     PISSN: 02692139     EISSN: None     Source Type: Journal    
DOI: 10.1093/protein/9.3.253     Document Type: Article

References (27)

1. Abagyan,R.A. and Totrov,M.V. (1994) J. Mol. Biol., 235, 983-1002.
2. Baldwin,J.M. (1993) EMBO J., 12, 1693-1703.
3. Bernstein,F.C, Koetzle,T.F., Williams,G.J.B., Meyer,E.F.Jr, Brice,M.D., Rogers,J.R., Kennard,O., Shimanouchi,T. and Tasumi,M. (1977) J. Mol. Biol., 112, 535-542.
4. Biosym Technologies (1994) Insight II User Guide. Biosym Technologies, San Diego, CA, Version 2.3.5.
5. Bowie,J.U., Luthy,R. and Eisenberg,D. (1991) Science, 253, 164-170.
6. Cronet,P., Sander,C. and Vriend,G. (1993) Protein Engng, 6, 59-64.
7. Deber,C.M, Khan,A.R., Li,Z., Joensson,C. and Glibowicka,M. (1993) Proc. Natl Acad. Sci. USA, 90, 11648-11652.
8. Degli Espositi,M., Crimi,M. and Venturoli,G. (1990) Eur. J. Biochem., 190, 207-219.
9. Deisenhofer,J., Epp,O., Miki,K., Huber,R. and Michel,H. (1985) Nature, 318, 618-624.
10. Donnelly,D. and Findlay,B.C. (1994) Curr. Opin. Struct. Biol., 4, 582-589.
11. Donnelly,D., Overington,J.P., Ruffle,S.V., Nugent,J.H.A. and Blundell,T.L. (1993) Protein Sci., 2, 55-70.
12. Du,P. and Alkorta,I. (1994) Protein Engng, 7, 1221-1229.
13. Efremov,R.G. and Vergoten,G. (1995) J. Phys. Chem., 99, 10658-10666.
14. Efremov,R.G. and Vergoten,G. (1996) J. Protein Chem., 15, 63-76.
15. Eisenberg,D., Weiss,R.M. and Terwilliger,T.C. (1982) Nature, 299, 371-374.
16. Frillingos,S., Sahin-Toth,M., Persson,B. and Kaback,R. (1994) Biochemistry, 33, 8074-8081.
17. Kabsch,W. and Sander,C. (1983) Biopolymers, 22, 2577-2637.
18. Lemmon,M.A. and Engelman,D. (1992) Quart. Rev. Biophys., 27, 157-218.
19. Luthy,R., Bowie,J.U. and Eisenberg,D. (1992) Nature, 356, 83-85.
20. Pakula,A.A. and Simon,M.I. (1992) Proc. Natl Acad. Sci. USA, 89, 4144-4148.
21. Persson,B. and Argos,P. (1994) J. Mol. Biol., 237, 182-192.
22. Rees,D.C., DeAntonio,L. and Eisenberg,D. (1989) Science, 245, 510-513.
23. Schulz,G.E. (1993) Curr. Opin. Struct. Biol., 5, 701-707.
24. Unwin,N. (1993) J. Mol. Biol., 229, 1101-1124.
25. von Heijne,G. (1994) Annu. Rev. Biophys. Biomol. Struct., 23, 167-192.
26. Whitley,P., Nilsson,L. and von Heijne,G. (1993) Biochemistry, 32, 8534-8539.
27. Zhang,D. and Weinstein,H. (1994) FEBS Lett., 337, 207-212.