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21
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10544236208
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in press
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L. L. Madison, E. I. Vivas, Y.-M. Li, C. T. Walsh, R. Kolter, ibid., in press.
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Mol. Microbiol.
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Madison, L.L.1
Vivas, E.I.2
Li, Y.-M.3
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22
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10544255441
-
-
note
-
2-terminus of McbA. Mass spectrometry and amino acid analysis indicated that the first Met was removed.
-
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-
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23
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10544222909
-
-
note
-
Aminoethyl bithiazole carboxylic acid was crosslinked to BSA by disuccinimidyl suberate through primary amines. Protein immunoblot analysis showed that the cross-linked sample was recognized by anti-MccB17, whereas control samples (BSA alone and BSA plus disuccinimidyl suberate) were not.
-
-
-
-
24
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10544230308
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Y.-M. Li, J. C. Milne, L. L. Madison, R. Kolter, C. T. Walsh, data not shown
-
Y.-M. Li, J. C. Milne, L. L. Madison, R. Kolter, C. T. Walsh, data not shown.
-
-
-
-
25
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0023181112
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-
unpublished results
-
The plasmids pChenB, pChenC, and pChenD contain gene-disrupting insertions [mini Tn 10 kanamycin resistance (kan')] in mcbB, mcbC, and mcbD of pCID909 (12), respectively (T. Chen and R. Kolter, unpublished results). The parent pCID909 and knockout plasmids pChenB, pChenC, and pChenD were transformed into ZK4 cells [L. Gilson, H. K. Mahanty. R. Kolter, J. Bacteriol. 169, 2466 (1987)], and the cellular extracts were used for an in vitro assay as described in Fig. 3B.
-
-
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Chen, T.1
Kolter, R.2
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26
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0023181112
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-
The plasmids pChenB, pChenC, and pChenD contain gene-disrupting insertions [mini Tn 10 kanamycin resistance (kan')] in mcbB, mcbC, and mcbD of pCID909 (12), respectively (T. Chen and R. Kolter, unpublished results). The parent pCID909 and knockout plasmids pChenB, pChenC, and pChenD were transformed into ZK4 cells [L. Gilson, H. K. Mahanty. R. Kolter, J. Bacteriol. 169, 2466 (1987)], and the cellular extracts were used for an in vitro assay as described in Fig. 3B.
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J. Bacteriol.
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-
Gilson, L.1
Mahanty, H.K.2
Kolter, R.3
-
27
-
-
10544220507
-
-
note
-
ZK4(pPY113) containing the seven genes mcbA through mcbG cloned into pBR322 (10) was used for MccB17 synthase production.
-
-
-
-
28
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10544226969
-
-
note
-
Protein amounts were determined with the Bradford reagent (Bio-Rad). McbA-β-Gal was used as subatrate of MccB17 synthase. A time course of the modification was monitored by protein immunoblot and Quantitated by the NIH-Image program. A point in the linear range was used to calculate the specific activity. The uncalibrated optical density was used for the area determination in the same blot.
-
-
-
-
29
-
-
10544254341
-
-
note
-
The U, for McbA(1-46) was estimated from the linear portion of rate piots as in Fig. 3B. Conversion of the absorbance units in the immunoblot to picomotes of bisteterocycle product was obtained from andpoint absorbance wheie MS analysis revealed only bisneterocycie product.
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-
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30
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0023392855
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1 transduction of zba-315::kan, ΔhtpG::lacZ from JCB42 [J. C. A. Bardwell and E. A. Craig, J. Bacterial. 170, 2977 (1988)]. The htpG knockout strain MC4100 ΔhtpG and control strain MC4100 were transformed with plasmid pPY113. These strains were assayed as described in Fig. 3B except that the McbA-β-Gal concentration was 30 μM.
-
(1987)
Proc. Natl. Acad. Sci. U.S.A.
, vol.84
, pp. 5177
-
-
Bardwell, J.C.A.1
Craig, E.A.2
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31
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0024044382
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1 transduction of zba-315::kan, ΔhtpG::lacZ from JCB42 [J. C. A. Bardwell and E. A. Craig, J. Bacterial. 170, 2977 (1988)]. The htpG knockout strain MC4100 ΔhtpG and control strain MC4100 were transformed with plasmid pPY113. These strains were assayed as described in Fig. 3B except that the McbA-β-Gal concentration was 30 μM.
-
(1988)
J. Bacterial.
, vol.170
, pp. 2977
-
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Bardwell, J.C.A.1
Craig, E.A.2
-
33
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10544249942
-
-
note
-
Attempts to effect modification of McbA(27-69) or Mcb(27- 46) by adding McbA(1-26) in trans have not resulted in heterocycle formation. Combinations of three concentrations (9.6, 2.4, and 0.6 μM) of McbA(1-26) and four concentrations (135, 24, 85, and 2.1 μM) of McbA(27-69) were used to test the two peptides in trans for heterocycle formation. The assay conditions were as described in Fig. 5A. The reactions at 0 and 120 min were stopped and analyzed by protein immunoblot.
-
-
-
-
34
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0023667781
-
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M. J. Jorgensen et al., Cell 48, 185 (1987); B. R. Hubbard et al., J. Biol. Chem. 264, 14145 (1989).
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Cell
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Jorgensen, M.J.1
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35
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0024358773
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M. J. Jorgensen et al., Cell 48, 185 (1987); B. R. Hubbard et al., J. Biol. Chem. 264, 14145 (1989).
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-
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Hubbard, B.R.1
-
37
-
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10544237757
-
-
note
-
In vivo data to be presented elsewhere (15) on the McbA-β-Gal fusion construct further confirms that the (1-26) propeptide region is a major recognition determinant for MccB17 synthase.
-
-
-
-
38
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0000717689
-
-
Academic Press, New York
-
2 as the hydrogen acceptor Glucose oxidase activity was determined with the glucose oxidase-peroxidase-o-dianisidine assay system [H. U. Bergmeyer, Methods of Enzymatic Analysis (Academic Press, New York, 1974), vol. 1, p. 457]. The reaction mix contained 0.04 units of glucose oxidase (Calbiochem), 0.4 units of horseradish peroxidase (Calbiochem), 0.37 M β-D-glucose, o-dianisidine (0.4 mg/ml) (Sigma), and 0.1 M sodium phosphate (pH 7.0). The reaction was initiated by adding glucose oxidase to the reacation mix. Samples were removed at 4, 8, 12, and 16 min, the reaction was quenched with HCI, and the absorbance at 460 nm was then determined.
-
(1974)
Methods of Enzymatic Analysis
, vol.1
, pp. 457
-
-
Bergmeyer, H.U.1
-
39
-
-
10544227390
-
-
note
-
The optical spectrum of purified McbC indicated the presence of a flavin moiety. The flavin was released from the enzyme by boiling for 15 min. The denatured protein was removed by centrifugation, and the flavin was identified by HPLC analysis (Vydac C18 protein-peptide column) with a gradient of methanol (10 to 40% in 60 min) in 0.1 M potassium phosphate (pH 5.3).
-
-
-
-
41
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0028641336
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J. J. Lee et al., Science 266, 1528 (1994); J. A. Porter et al., Nature 374, 363 (1995).
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Science
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Lee, J.J.1
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J. J. Lee et al., Science 266, 1528 (1994); J. A. Porter et al., Nature 374, 363 (1995).
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Porter, J.A.1
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M.-Q. Xu, M. W. Southworth, F. B. Mersha, L. J. Hornstra, F. B. Perler, Cell 75, 1371 (1993); M.-Q. Xu et al., EMBO J. 23, 5517 (1994); N. D. Clarke, Proc. Natl. Acad. Sci. U.S.A. 91, 11084 (1994); A. A. Cooper and T. H. Stevens, Trends Biochem. Sci. 20, 351 (1995).
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Xu, M.-Q.1
Southworth, M.W.2
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Hornstra, L.J.4
Perler, F.B.5
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M.-Q. Xu, M. W. Southworth, F. B. Mersha, L. J. Hornstra, F. B. Perler, Cell 75, 1371 (1993); M.-Q. Xu et al., EMBO J. 23, 5517 (1994); N. D. Clarke, Proc. Natl. Acad. Sci. U.S.A. 91, 11084 (1994); A. A. Cooper and T. H. Stevens, Trends Biochem. Sci. 20, 351 (1995).
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Clarke, N.D.1
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46
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0029116947
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M.-Q. Xu, M. W. Southworth, F. B. Mersha, L. J. Hornstra, F. B. Perler, Cell 75, 1371 (1993); M.-Q. Xu et al., EMBO J. 23, 5517 (1994); N. D. Clarke, Proc. Natl. Acad. Sci. U.S.A. 91, 11084 (1994); A. A. Cooper and T. H. Stevens, Trends Biochem. Sci. 20, 351 (1995).
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Cooper, A.A.1
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47
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0026774103
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E. O. Davis, P. J. Jenner, P. C. Brooks, M. J. Colston, S. G. Sedgwick, Cell 71, 201 (1992).
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Davis, E.O.1
Jenner, P.J.2
Brooks, P.C.3
Colston, M.J.4
Sedgwick, S.G.5
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48
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10544224225
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R. A. Hodges, F. B. Perler, C. J. Noren, W. E. Jack, Nucleic Acids Res. 20, 6135 (1992).
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Hodges, R.A.1
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49
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A. A. Cooper, Y. J. Chen, M. A. Lindorfer, T. H. Stevens, EMBO J. 12, 2575 (1993).
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52
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R. A. J. Pascal, N. L. Trang, A. Cerami, C. Walsh, Biochemistry 22, 171 (1983).
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, pp. 171
-
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Pascal, R.A.J.1
Trang, N.L.2
Cerami, A.3
Walsh, C.4
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53
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0027512265
-
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T. E. Benson, M. J. L., M. A. C., F. A. Etzkorn, C. T. Walsh, ibid. 32, 2024 (1993).
-
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Biochemistry
, vol.32
, pp. 2024
-
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Benson, T.E.1
L., M.J.2
C., M.A.3
Etzkorn, F.A.4
Walsh, C.T.5
-
55
-
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10544254761
-
-
note
-
The Sal l-Xmn I fragment of mcbA was used to generate an in-frame fusion with β-Gal at the 65th codon of mcbA, creating the plasmid pPY116 (15). McbA-β-Gal was purified from the strain ZK4(pPY116) with an aminobenzyl 1-thio-β-D-galactopyranoside-agarose column (Sigma).
-
-
-
-
56
-
-
10544228621
-
-
note
-
All four peptides were purified by HPLC [Bio-Rad Preparative C18 column, with solvent A: 0.1% trifluoroacetic acid (TFA) in water, and solvent B: 0.1% TFA in acetonitrile] and the structure confirmed by mass spectrometry. The concentration of the peptides was determined by amino acid analysis.
-
-
-
-
57
-
-
10544240446
-
-
note
-
The ZK4(pPY113) strain was used for purification of MccB17 synthase. An overnight culture grown in LB media containing ampicillin (Amp) was diluted 500-fold in M63 medium containing Amp and grown at 37°C for 20 to 24 hours. The cells were pelleted by centrifugation (5000g) and lysed with a French pressure cell. The supernatant after 105,000g centrifugation was used for purification by phenyl-Sepharose, DEAE-Sepharose, Sephacryl S-200, and MonoQ (Pharmacia). The activity was monitored by protein immunoblot analysis as described in Fig. 3. with McbA-β-Gal as a substrate.
-
-
-
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58
-
-
10544245115
-
-
note
-
2] four times and collected by centrifugation. SDS sample buffer was added to the complex, and the supernatants were subjected to protein immunoblot analysis.
-
-
-
-
59
-
-
10544239199
-
-
note
-
2, 1 mM ATP, 1 mM dithiothreitol, and purified MccB17 synthase (0.24 mg/ml). The reactions were carried out at 37°C and stopped by injection onto HPLC (Vydac C18 column, 300 Å, solvent A: 0.1% TFA in water, and solvent B: 0.09% TFA in acetonitrile). McbA(1-46) was eluted around 33% solvent B. The 0- and 45-min reaction mixtures showed the same elution patterns, a peak at 33% solvent B and other protein peaks after >45% solvent B. HPLC fractions were analyzed by protein immunoblot with anti-MccB17 and only the peak (33% solvent B) for the 45-min reaction was antibody-positive (18).
-
-
-
-
60
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10544242259
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note
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2-terminal sequencing, amino acid analysis, and MS analysis; S. Hecht (University of Virginia) for aminoethyl bithiazole carboxylic acid; M. Bollinger (Pennsylvania State University) and S Fisher and D. McCafferty of this laboratory for their help and suggestions regarding the anaerobic reactions. We also thank other members of the C.T.W. laboratory for suggestions concerning this manuscript. Supported by NIH grant GM20011 (C.T.W.) and NSF grant MCB9207323 (R.K.). J.C.M. is supported by a postdoctoral fellowship (grant PF4332) from the American Cancer Society, and L.L.M. is supported by NIH training grants 5T32GM07306-19 and 5T32Al07410-03.
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