Mapping of replication initiation sites in the mouse ribosomal gene cluster

Chromosoma

Volumn 104, Issue 7, 1996, Pages 511-518

  Gogel E ^a   Langst G ^b   Grummt, I ^a,b   Kunkel, E ^a   Grummt, F ^a  

^a UNIVERSITY OF WÜRZBURG   (Germany)

^b GERMAN CANCER RESEARCH CENTER DKFZ   (Germany)

Author keywords

[No Author keywords available]

Indexed keywords

NUCLEASE; RIBOSOME DNA;

ANIMAL CELL; ARTICLE; CHROMATIN STRUCTURE; CONTROLLED STUDY; DNA REPLICATION ORIGIN; DNA SEQUENCE; GENE CLUSTER; GENE MAPPING; MOUSE; NONHUMAN; PROMOTER REGION; RIBOSOME; TRANSCRIPTION INITIATION;

3T3 CELLS; ANIMALS; BASE SEQUENCE; CHROMOSOME MAPPING; DNA REPLICATION; DNA, RIBOSOMAL; MICE; MOLECULAR SEQUENCE DATA; REPLICATION ORIGIN; REPLICON; RNA, RIBOSOMAL;

EID: 0029920642     PISSN: 00095915     EISSN: None     Source Type: Journal    
DOI: 10.1007/s004120050143     Document Type: Article

References (48)

1. Anachkova B, Hamlin JL (1989) Replication in the amplified dihydrofolate reductase domain in CHO cells may initiate at two distinct sites, one of which is a repetitive sequence element. Mol Cell Biol 9: 532-540
2. Benard M, Lagnel C, Pierron G (1995) Site-specific initiation of DNA replication within the non-transcribed spacer of Physarum rDNA. Nucleic Acids Res 23: 1447-1453
3. Berberich S, Leffak M (1993) DNase-sensitive chromatin structure near a chromosomal origin of bidirectional replication of the avian α-globin locus. DNA Cell Biol 12: 703-714
4. Bergeman AD, Johnson EM (1992) The HcLa Pur factor binds single-stranded DNA at a specific element conserved in gene flanking regions and origins of DNA replication. Mol Cell Biol 12: 1257-1265
5. Botchan PM, Dayton AI (1982) A specific replication origin in the chromosomal rDNA of Lvtechinus variegatus. Nature 299: 453-456
6. Bozzoni I, Baldari CT, Amaldi R, Buongiorno-Nardelli M (1981) Replication of ribosomal DNA in Xenopus laevis. Eur J Biochem 118: 585-590
7. Braaten DC, Thomas JR, Little RD, Dickson KR, Goldberg I, Schlessinger D, Ciccodicola A, D'Urso M (1988) Locations and contexts of sequences that hybridize to poly (dG-dT)-(dC-dA) in mammalian ribosomal DNAs and two X-linked genes. Nucleic Acids Res 16: 865-881
8. Brewer BJ, Fangman WL (1988) A replication fork barrier at the 3' end of yeast ribosomal RNA genes. Cell 55: 637-643
9. Burhans WC, Seleque JE, Heintz NH (1986) Isolation of the origin of replication associated with the amplified Chinese hamster dihydrofolate reductase domain. Proc Natl Acad Sci USA 83: 7790-7794
10. Burhans WC, Vassiliev LT, Caddle MS, Heintz NH, DePamphilis ML (1990) Identification of an origin of bidirectional DNA replication in mammalian chromosomes. Cell 62: 955-965
11. Caddle MS, Lussier RH, Heintz NH (1990) Intramolecular DNA triplexes, bent DNA and DNA unwinding elements in the initiation region of an amplified dihydrofolate reductase replicon. J Mol Biol 211: 19-23
12. Coffman FD, Georgoff I, Fresa KL, Sylvester J, Gonzalez I, Cohen S (1993) In vitro replication of plasmids containing human ribosomal gene sequences: origin localization and dependence of an aprotinin-binding cytosolic protein. Exp Cell Res 209: 123-132
13. Coverley D, Laskey RA (1994) Regulation of eukaryotic DNA replication. Annu Rev Biochem 63: 745-776
14. DePamphilis ML (1988) Transcriptional elements as components of eukaryotic origins of DNA replication. Cell 52: 635-638
15. DePamphilis ML (1993a) Origins of DNA replication that function in eukaryotic cells. Curr Opin Cell Biol 5: 434-441
16. DePamphilis ML (1993b) Origins of DNA replication in metazoan chromosomes. J Biol Chem 268: 1-4
17. DePamphilis ML (1993c) Eukaryotic DNA replication: Anatomy of an origin. Annu Rev Biochem 62: 29-63
18. Dijkwel PA, Hamlin JL (1992) Initiation of DNA replication in the dihydrofolate reductase locus is confined to the early S period in CHO cells synchronized with the plant amino acid Mimosine. Mol Cell Biol 12: 3715-3722
19. Eckdahl TT, Anderson JN (1990) Conserved DNA structures in origins of replication. Nucleic Acids Res 18: 1609-1612
20. Fangman WL, Brewer BJ (1991) Activation of replication origins within yeast chromosomes. Annu Rev Cell Biol 7: 375-402
21. Handeli S, Klar M, Meuth M, Cedar H (1989) Mapping replication units in animal cells. Cell 57: 909-920
22. Herbomel P, Saragosti S, Blangy D, Yaniv M (1981) Fine structure of the origin-proximal DNAsel-hypersensitive region in wild-type and EC mutant polyoma. Cell 25: 651-658
23. Hernandez PL, Bjerknes CA, Lamm SS, Van't Hof J (1988) Proximity of an ARS consensus sequence to a replication origin of pea (Pisum sativum). Plant Mol Biol 10: 413-422
24. Koo HS, Wu HM, Crothers DM (1986) DNA bending at adenine thymine tracts. Nature 320: 501-506
25. Kuhn A, Deppert A, Grummt I (1990) A 140-base-pair repetitive sequence element in the mouse rRNA gene spacer enhances transcription by RNA polymerase I in a cell-free system. Proc Natl Acad Sci USA 87: 7527-7531
26. Linskens MHK, Huberman JA (1988) Organization of replication of ribosomal DNA in Saccharomyces cerevisiae. Mol Cell Biol 8: 4927-4935
27. Little RD, Platt THK, Schildkraut CL (1993) Initiation and termination of DNA replication in human rRNA genes. Mol Cell Biol 13: 6600-6613
28. Palen EG, Cech TR (1984) Chromatin structure at the replication origins and transcription-initiation regions of the ribosomal RNA genes of Tetrahymena. Cell 36: 933-942
29. Pan WJ, Gallagher RC, Blackburn EH (1995) Replication of an rRNA gene origin plasmid in the Terrahymena thermophila macronucleus is prevented by transcription through the origin from an RNA polymerase I promoter. Mol Cell Biol 15: 3372-3381
30. Putnam CD, Copenhaver GP, Denton ML, Pikaard CS (1994) The RNA polymerase I transactivator upstream binding factor requires its dimerization domain and high-mobility-group (HMG) box 1 to bend, wrap, and positively supercoil enhancer DNA. Mol Cell Biol 14: 6476-6488
31. Reeves R (1992) Chromatin changes during the cell cycle. Curr Opin Cell Biol 4: 313-423
32. Saffer LD, Miller OL (1986) Electron microscopic study of Saccharomyces cerevisiae rDNA chromatin replication. Mol Cell Biol 6: 1148-1157
33. Saragosti S, Moyne G, Yaniv M (1980) Absence of nucleosomes in a fraction of SV40 chromatin between the origin of replication and the region coding for the late leader RNA. Cell 20: 65-73
34. Stolzenburg F, Gerwig R, Dinkl E, Grummt F (1994) Structural homologies and functional similarities between mammalian origins of replication and amplification promoting sequences. Chromosoma 103: 209-214
35. Strauss F, Varshavsky AJ (1984) A protein binds to a satellite DNA repeat at three specific sites that would be brought into mutual proximity by DNA folding in the nucleosome. Cell 37: 889-901
36. Truett MA, Gall JG (1977) The replication of ribosomal DNA in the macronucleus of Tetrahymena. Chromosoma 64: 295-303
37. Van't Hof J, Lamm SS (1992) Site of initiation of replication of the ribosomal genes of pea (Pisum sativum) detected by two-dimensional gel electrophoresis. Plant Mol Biol 20: 377-382
38. Varshavsky AJ, Sundin OH, Bohn MJ (1979) A stretch of "late" SV40 viral DNA about 400 bp long which includes the origin of replication is specifically exposed in SV40 minichromosomes. Cell 16: 453-466
39. Vassilev L, Johnson EM (1989) Mapping initiation sites of DNA replication in vivo using polymerase chain reaction amplification of nascent strand segments. Nucleic Acids Res 17: 7693-7705
40. Vabsilev L, Johnson EM (1990) An initiation zone of chromosomal DNA replication located upstream of the c-myc gene in proliferating HeLa cells. Mol Cell Biol 10: 4899-4904
41. Vassilev LT, Burhans WC, DePamphilis ML (1990) Mapping an origin of DNA replication at a single-copy locus in exponentially proliferating mammalian cells. Mol Cell Biol 10: 4685-4689
42. Vogt VM, Braun R (1977) The replication of ribosomal DNA in Physarum polycephalum. Eur J Biochem 80: 557-566
43. Wegner M, Zastrow G, Klavinius A, Schwender S, Müller F, Luksza H, Hoppe J, Wienberg J, Grummt F (1989) Cis-acting sequences from mouse rDNA promote plasmid DNA amplification and persistence in mouse cells: implication of HMG-I in their function. Nucleic Acids Res 17: 9909-9932
44. Wegner M, Schwender S, Dinkl E, Grummt F (1990) Interaction of a protein with a palindromic sequence from murine rDNA increases the occurrence of amplification-dependent transformation in mouse cells. J Biol Chem 265: 13925-13932
45. Wu HM, Crothers DM (1984) The locus of sequence-directed and protein-induced DNA bending. Nature 308: 509-513
46. Yoon Y, Sanchez JA, Brun C, Huberman JA (1995) Mapping of replication initiation sites in human ribosomal DNA by nascent-strand abundance analysis. Mol Cell Biol 15: 2482-2489
47. Zhao K, Käs E, Gonzalez E, Laemmli K (1993) SAR-dependent mobilization of histone H1 by HMG-I/Y in vitro: HMG-I/Y is enriched in H1-depleted chromatin. EMBO J 12: 3237-3247
48. Zwieb C, Kim J, Adhya S (1989) DNA bending by negative regulatory proteins: Gal and Lac repressors. Genes Dev 3: 606-611