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Volumn 257, Issue 3, 1996, Pages 550-560

Replication of plasmid R6K γ origin in vivo and in vitro: Dependence on IHF binding to the ihf1 site

Author keywords

Copy up; IHF; Initiator protein; R6k origin; Regulation; Replication

Indexed keywords

BACTERIAL DNA; INTEGRATION HOST FACTOR; MUTANT PROTEIN; PLASMID DNA;

EID: 0029919192     PISSN: 00222836     EISSN: None     Source Type: Journal    
DOI: 10.1006/jmbi.1996.0184     Document Type: Article
Times cited : (13)

References (45)
  • 1
    • 0024280870 scopus 로고
    • Transcriptional activation of initiation of replication from the E. coli chromosomal origin: An RNA-DNA hybrid near oriC
    • Baker, T. A. & Kornberg, A. (1988). Transcriptional activation of initiation of replication from the E. coli chromosomal origin: an RNA-DNA hybrid near oriC. Cell, 55, 113-123.
    • (1988) Cell , vol.55 , pp. 113-123
    • Baker, T.A.1    Kornberg, A.2
  • 2
    • 0018800089 scopus 로고
    • A rapid alkaline extraction procedure for screening recombinant plasmid DNA
    • Birnboim, H. C. & Doly, J. (1979). A rapid alkaline extraction procedure for screening recombinant plasmid DNA. Nucl. Acids Res. 7, 1513-1523.
    • (1979) Nucl. Acids Res. , vol.7 , pp. 1513-1523
    • Birnboim, H.C.1    Doly, J.2
  • 3
    • 0024284091 scopus 로고
    • Duplex opening by DnaA protein at novel sequences in initiation of replication at the origin of the E. coli chromosome
    • Bramhill, D. & Kornberg, A. (1988a). Duplex opening by DnaA protein at novel sequences in initiation of replication at the origin of the E. coli chromosome. Cell, 52, 743-755.
    • (1988) Cell , vol.52 , pp. 743-755
    • Bramhill, D.1    Kornberg, A.2
  • 4
    • 0023766613 scopus 로고
    • A model for initiation at origins of DNA replication
    • Bramhill, D. & Kornberg, A. (1988b). A model for initiation at origins of DNA replication. Cell, 54, 915-918.
    • (1988) Cell , vol.54 , pp. 915-918
    • Bramhill, D.1    Kornberg, A.2
  • 5
    • 0025965115 scopus 로고
    • Integration host factor of Escherichia coli reverses the inhibition of R6K plasmid replication by π initiator protein
    • Dellis, S. & Filutowicz, M. (1991). Integration host factor of Escherichia coli reverses the inhibition of R6K plasmid replication by π initiator protein. J. Bacteriol. 173, 1279-1286.
    • (1991) J. Bacteriol. , vol.173 , pp. 1279-1286
    • Dellis, S.1    Filutowicz, M.2
  • 6
    • 0026454456 scopus 로고
    • Two alternative structures can be formed by IHF protein binding to the plasmid R6K γ origin
    • Dellis, S., Schatz, T., Rutlin, K., Inman, R. B. & Filutowicz, M. (1992). Two alternative structures can be formed by IHF protein binding to the plasmid R6K γ origin. J. Biol. Chem. 267, 24426-24432.
    • (1992) J. Biol. Chem. , vol.267 , pp. 24426-24432
    • Dellis, S.1    Schatz, T.2    Rutlin, K.3    Inman, R.B.4    Filutowicz, M.5
  • 7
    • 0014686023 scopus 로고
    • Isolation of an E. coli strain with a mutation affecting DNA polymerase
    • DeLucia, P. & Cairns, J. (1969). Isolation of an E. coli strain with a mutation affecting DNA polymerase. Nature, 224, 1164-1166.
    • (1969) Nature , vol.224 , pp. 1164-1166
    • DeLucia, P.1    Cairns, J.2
  • 8
    • 0026601458 scopus 로고
    • Site-directed mutagenesis of virtually any plasmid by eliminating a unique site
    • Deng, W. P. & Nickoloff, J. A. (1992). Site-directed mutagenesis of virtually any plasmid by eliminating a unique site. Anal. Biochem. 200, 81-88.
    • (1992) Anal. Biochem. , vol.200 , pp. 81-88
    • Deng, W.P.1    Nickoloff, J.A.2
  • 9
    • 0023038675 scopus 로고
    • Specialized nucleoprotein structures at the origin of replication of bacteriophage λ: Localized unwinding of duplex DNA by a six-protein reaction
    • Dodson, M., Echols., H., Wickner, S., Alfano, C., Mensa-Wilmot, K., Gomes, B., LeBowitz, J., Roberts, J. D. & McMacken, R. (1986). Specialized nucleoprotein structures at the origin of replication of bacteriophage λ: localized unwinding of duplex DNA by a six-protein reaction. Proc. Natl Acad. Sci. USA, 83, 7638-7642.
    • (1986) Proc. Natl Acad. Sci. USA , vol.83 , pp. 7638-7642
    • Dodson, M.1    Echols, H.2    Wickner, S.3    Alfano, C.4    Mensa-Wilmot, K.5    Gomes, B.6    LeBowitz, J.7    Roberts, J.D.8    McMacken, R.9
  • 10
    • 0023201251 scopus 로고
    • Unwinding of duplex DNA from the SV40 origin of replication by T antigen
    • Dodson, M., Dean, F. B., Bullock, P., Echols, H. & Hurwitz, J. (1987). Unwinding of duplex DNA from the SV40 origin of replication by T antigen. Science, 238, 964-967.
    • (1987) Science , vol.238 , pp. 964-967
    • Dodson, M.1    Dean, F.B.2    Bullock, P.3    Echols, H.4    Hurwitz, J.5
  • 11
    • 0024284318 scopus 로고
    • The integration host factor of Escherichia coli binds to multiple sites at plasmid R6K y origin and is essential for replication
    • Filutowicz, M. & Appelt, K. (1988). The integration host factor of Escherichia coli binds to multiple sites at plasmid R6K y origin and is essential for replication. Nucl. Acids Res. 16, 3829-3841.
    • (1988) Nucl. Acids Res. , vol.16 , pp. 3829-3841
    • Filutowicz, M.1    Appelt, K.2
  • 12
    • 0026351191 scopus 로고
    • A compact nucleoprotein structure is produced by binding of Escherichia coli integration host factor (IHF) to the replication origin of plasmid R6K
    • Filutowicz, M. & Inman, R. B. (1991). A compact nucleoprotein structure is produced by binding of Escherichia coli integration host factor (IHF) to the replication origin of plasmid R6K. J. Biol. Chem. 266(35), 24077-24083.
    • (1991) J. Biol. Chem. , vol.266 , Issue.35 , pp. 24077-24083
    • Filutowicz, M.1    Inman, R.B.2
  • 13
    • 0021981152 scopus 로고
    • Role of the π initiation protein and direct nucleotide sequence repeats in the regulation of plasmid R6K replication
    • (Helinski, D. R., Cohen, S. N., Clewell, D. B., Jackson, D. A. & Hollaender, A., eds), Plenum Publishing Corporation, New York
    • Filutowicz, M., McEachern, M. J., Greener, A., Mukhopadhyay P., Uhlenhopp, E., Durland, R. & Helinski, D. R. (1985a). Role of the π initiation protein and direct nucleotide sequence repeats in the regulation of plasmid R6K replication. In Plasmids in Bacteria (Helinski, D. R., Cohen, S. N., Clewell, D. B., Jackson, D. A. & Hollaender, A., eds), pp. 125-140, Plenum Publishing Corporation, New York.
    • (1985) Plasmids in Bacteria , pp. 125-140
    • Filutowicz, M.1    McEachern, M.J.2    Greener, A.3    Mukhopadhyay, P.4    Uhlenhopp, E.5    Durland, R.6    Helinski, D.R.7
  • 14
    • 0022477618 scopus 로고
    • Binding of purified wild-type and mutant π initiation proteins to a replication origin region of plasmid R6K
    • Filutowicz, M., Uhlenhopp, E. & Helinski, D. R. (1985b). Binding of purified wild-type and mutant π initiation proteins to a replication origin region of plasmid R6K. J. Mol. Biol. 187, 225-239.
    • (1985) J. Mol. Biol. , vol.187 , pp. 225-239
    • Filutowicz, M.1    Uhlenhopp, E.2    Helinski, D.R.3
  • 15
    • 0022868961 scopus 로고
    • Positive and negative roles of an initiator protein at an origin of replication
    • Filutowicz, M., McEachern, M. J. & Helinski, D. R. (1986). Positive and negative roles of an initiator protein at an origin of replication. Proc. Natl Acad. Sci. USA, 83, 9645-9649.
    • (1986) Proc. Natl Acad. Sci. USA , vol.83 , pp. 9645-9649
    • Filutowicz, M.1    McEachern, M.J.2    Helinski, D.R.3
  • 18
    • 0028030486 scopus 로고
    • Purification of the Escherichia coli integration host factor (IHF) in one Chromatographic step
    • Filutowicz, M., Grimek, H. & Appelt, K. (1994b). Purification of the Escherichia coli integration host factor (IHF) in one Chromatographic step. Gene, 147, 149-150.
    • (1994) Gene , vol.147 , pp. 149-150
    • Filutowicz, M.1    Grimek, H.2    Appelt, K.3
  • 19
    • 0347249969 scopus 로고
    • Enzymatic replication of the origin of the Escherichia coli chromosome
    • Fuller, R. S., Kaguni, J. M. & Kornberg, A. (1981). Enzymatic replication of the origin of the Escherichia coli chromosome. Proc. Natl Acad. Sci. USA, 78, 7370-7374.
    • (1981) Proc. Natl Acad. Sci. USA , vol.78 , pp. 7370-7374
    • Fuller, R.S.1    Kaguni, J.M.2    Kornberg, A.3
  • 20
    • 0026329118 scopus 로고
    • The P1 plasmid partition complex at parS. The influence of Escherichia coli integration host factor and of substrate topology
    • Funnell, B. E. (1991). The P1 plasmid partition complex at parS. The influence of Escherichia coli integration host factor and of substrate topology J. Biol. Chem. 266(22), 14328-14337.
    • (1991) J. Biol. Chem. , vol.266 , Issue.22 , pp. 14328-14337
    • Funnell, B.E.1
  • 21
    • 0020805574 scopus 로고
    • Interaction of the plasmid R6K-encoded replication initiator protein with its binding sites on DNA
    • Germino, J. & Bastia, D. (1983). Interaction of the plasmid R6K-encoded replication initiator protein with its binding sites on DNA. Cell, 34, 125-134.
    • (1983) Cell , vol.34 , pp. 125-134
    • Germino, J.1    Bastia, D.2
  • 22
    • 0027049067 scopus 로고
    • Deformation of DNA during site-specific recombination of bacteriophage lambda: Replacement of IHF protein by HU protein or sequence-directed bends
    • Goodman, S. D., Nicholson, S. C. & Nash, H. A. (1992). Deformation of DNA during site-specific recombination of bacteriophage lambda: replacement of IHF protein by HU protein or sequence-directed bends. Proc. Natl Acad. Sci. USA, 89(24), 11910-11914.
    • (1992) Proc. Natl Acad. Sci. USA , vol.89 , Issue.24 , pp. 11910-11914
    • Goodman, S.D.1    Nicholson, S.C.2    Nash, H.A.3
  • 23
    • 0025180835 scopus 로고
    • Searching for and predicting the activity of sites for DNA binding proteins: Compilation and analysis of the binding sites for Escherichia coli integration host factor (IHF)
    • Goodrich, J. A., Schwartz, M. L. & McClure, W. R. (1990). Searching for and predicting the activity of sites for DNA binding proteins: compilation and analysis of the binding sites for Escherichia coli integration host factor (IHF). Nucl. Acids Res. 18(17), 4993-5000.
    • (1990) Nucl. Acids Res. , vol.18 , Issue.17 , pp. 4993-5000
    • Goodrich, J.A.1    Schwartz, M.L.2    McClure, W.R.3
  • 24
    • 0028238186 scopus 로고
    • Determining the DNA sequence elements required for binding integration host factor to two different target sites
    • Hales, L. M., Gumport, R. I. & Gardner, J. F. (1994). Determining the DNA sequence elements required for binding integration host factor to two different target sites. J. Bacteriol. 176(10), 2999-3006.
    • (1994) J. Bacteriol. , vol.176 , Issue.10 , pp. 2999-3006
    • Hales, L.M.1    Gumport, R.I.2    Gardner, J.F.3
  • 25
    • 0025012093 scopus 로고
    • The integration host factor stimulates interaction of RNA polymerase with NIFA, the transcriptional activator for nitrogen fixation operons
    • Hoover, T. R., Santero, E., Porter, S. & Kustu, S. (1990). The integration host factor stimulates interaction of RNA polymerase with NIFA, the transcriptional activator for nitrogen fixation operons. Cell, 63(1), 11-22.
    • (1990) Cell , vol.63 , Issue.1 , pp. 11-22
    • Hoover, T.R.1    Santero, E.2    Porter, S.3    Kustu, S.4
  • 26
    • 0022125708 scopus 로고
    • A single amino acid alteration in the initiation protein is responsible for the DNA overproduction phenotype of copy number mutants of plasmid R6K
    • Inuzuka, M. & Wada, Y. (1985). A single amino acid alteration in the initiation protein is responsible for the DNA overproduction phenotype of copy number mutants of plasmid R6K. EMBO J. 4(9), 2301-2307.
    • (1985) EMBO J. , vol.4 , Issue.9 , pp. 2301-2307
    • Inuzuka, M.1    Wada, Y.2
  • 27
    • 0026042017 scopus 로고
    • Conformational changes induced by integration host factor at origin y of R6K and copy number control
    • Kelley, W. L. & Bastia, D. (1991). Conformational changes induced by integration host factor at origin y of R6K and copy number control. J. Biol. Chem. 266(24), 15924-15937.
    • (1991) J. Biol. Chem. , vol.266 , Issue.24 , pp. 15924-15937
    • Kelley, W.L.1    Bastia, D.2
  • 28
    • 0026647430 scopus 로고
    • Structural and functional analysis of a replication enhancer: Separation of the enhancer activity from origin function by mutational dissection of the replication origin y of plasmid R6K
    • Kelley W. L., Patel, I. & Bastia, D. (1992). Structural and functional analysis of a replication enhancer: separation of the enhancer activity from origin function by mutational dissection of the replication origin y of plasmid R6K. Proc. Natl Acad. Sci. USA, 89, 5078-5082.
    • (1992) Proc. Natl Acad. Sci. USA , vol.89 , pp. 5078-5082
    • Kelley, W.L.1    Patel, I.2    Bastia, D.3
  • 29
    • 0002153524 scopus 로고
    • Plasmid incompatibility and replication control
    • (Clewell, D. B., ed.), Plenum Press, New York
    • Kittell, B. L. & Helinski, D. R. (1992). Plasmid incompatibility and replication control. In Bacterial Conjugation (Clewell, D. B., ed.), pp. 223-242, Plenum Press, New York.
    • (1992) Bacterial Conjugation , pp. 223-242
    • Kittell, B.L.1    Helinski, D.R.2
  • 32
    • 0021915343 scopus 로고
    • Mutations in direct repeat sequences and in a conserved sequence adjacent to the repeats result in a defective replication origin in plasmid R6K
    • McEachern, M. J., Filutowicz, M. & Helinski, D. R. (1985). Mutations in direct repeat sequences and in a conserved sequence adjacent to the repeats result in a defective replication origin in plasmid R6K. Proc. Natl Acad. Sci. USA, 82, 1480-1484.
    • (1985) Proc. Natl Acad. Sci. USA , vol.82 , pp. 1480-1484
    • McEachern, M.J.1    Filutowicz, M.2    Helinski, D.R.3
  • 33
    • 0024449594 scopus 로고
    • Transcriptional activation of bacteriophage λ DNA replication in vitro: Regulatory role of histone-like protein HU of Escherichia coli
    • Mensa-Wilmot, K., Carroll, K. & McMacken, R. (1989). Transcriptional activation of bacteriophage λ DNA replication in vitro: regulatory role of histone-like protein HU of Escherichia coli. EMBO J. 8(8), 2393-2402.
    • (1989) EMBO J. , vol.8 , Issue.8 , pp. 2393-2402
    • Mensa-Wilmot, K.1    Carroll, K.2    McMacken, R.3
  • 34
    • 0024340762 scopus 로고
    • DNA looping generated by DNA bending protein IHF and the two domains of lambda integrase
    • Moitoso de Vargas, L., Kim, S. & Landy A. (1989). DNA looping generated by DNA bending protein IHF and the two domains of lambda integrase. Science, 244, 1457-1461.
    • (1989) Science , vol.244 , pp. 1457-1461
    • Moitoso De Vargas, L.1    Kim, S.2    Landy, A.3
  • 35
    • 0026635298 scopus 로고
    • Identification of a novel promoter in the replication control region of plasmid R6K
    • Mukerji, P., Greener, A. & Filutowicz, M. (1992). Identification of a novel promoter in the replication control region of plasmid R6K. J. Bacteriol. 174, 4777-4782.
    • (1992) J. Bacteriol. , vol.174 , pp. 4777-4782
    • Mukerji, P.1    Greener, A.2    Filutowicz, M.3
  • 37
    • 0023837775 scopus 로고
    • Initiator protein includes helix destabilization at the λ origin: A prepriming step in DNA replication
    • Schnös, M., Zahn, K., Inman, R. B. & Blattner, F. R. (1988). Initiator protein includes helix destabilization at the λ origin: a prepriming step in DNA replication. Cell, 52, 385-395.
    • (1988) Cell , vol.52 , pp. 385-395
    • Schnös, M.1    Zahn, K.2    Inman, R.B.3    Blattner, F.R.4
  • 38
    • 0018351589 scopus 로고
    • Nucleotide sequence of the region of an origin of replication of the antibiotic resistance plasmid R6K
    • Stalker, D. M., Kolter, R. & Helinski, D. R. (1979). Nucleotide sequence of the region of an origin of replication of the antibiotic resistance plasmid R6K. Proc. Natl Acad. Sci. USA, 76, 1150-1154.
    • (1979) Proc. Natl Acad. Sci. USA , vol.76 , pp. 1150-1154
    • Stalker, D.M.1    Kolter, R.2    Helinski, D.R.3
  • 39
    • 0021085802 scopus 로고
    • Release of initiation control by a mutational alteration in the R6K π protein required for plasmid DNA replication
    • Stalker, D. M., Filutowicz, M. & Helinski, D. R. (1983). Release of initiation control by a mutational alteration in the R6K π protein required for plasmid DNA replication. Proc. Natl Acad. Sci. USA, 80(18), 5500-5504.
    • (1983) Proc. Natl Acad. Sci. USA , vol.80 , Issue.18 , pp. 5500-5504
    • Stalker, D.M.1    Filutowicz, M.2    Helinski, D.R.3
  • 40
    • 0017125914 scopus 로고
    • Replication of small plasmids in extracts of Escherichia coli
    • Staudenbauer, W. L. (1976). Replication of small plasmids in extracts of Escherichia coli. Mol. Gen. Genet. 145, 273-280.
    • (1976) Mol. Gen. Genet. , vol.145 , pp. 273-280
    • Staudenbauer, W.L.1
  • 41
    • 0025952217 scopus 로고
    • Cooperativity at a distance promoted by the combined action of two replication initiator proteins and a DNA bending protein at the replication origin of pSC101
    • Stenzel, T. T., MacAllister, T. & Bastia, D. (1991). Cooperativity at a distance promoted by the combined action of two replication initiator proteins and a DNA bending protein at the replication origin of pSC101. Genes Dev. 5, 1453-1463.
    • (1991) Genes Dev. , vol.5 , pp. 1453-1463
    • Stenzel, T.T.1    MacAllister, T.2    Bastia, D.3
  • 42
    • 0028848266 scopus 로고
    • Altered forms of initiator π (copy-up) suppress the point mutations inactivating the γ origin of plasmid R6K
    • Urh, M., Flashner, Y., Shafferman, A. & Filutowicz, M. (1995). Altered forms of initiator π (copy-up) suppress the point mutations inactivating the γ origin of plasmid R6K. J. Bacteriol. 177, 6732-6739.
    • (1995) J. Bacteriol. , vol.177 , pp. 6732-6739
    • Urh, M.1    Flashner, Y.2    Shafferman, A.3    Filutowicz, M.4
  • 43
    • 0026593805 scopus 로고
    • Roles of a 106-bp origin enhancer and Escherichia coli DnaA protein in replication of plasmid R6K
    • Wu, F., Goldberg, I. & Filutowicz, M. (1992). Roles of a 106-bp origin enhancer and Escherichia coli DnaA protein in replication of plasmid R6K. Nucl. Acids Res. 20(4), 811-817.
    • (1992) Nucl. Acids Res. , vol.20 , Issue.4 , pp. 811-817
    • Wu, F.1    Goldberg, I.2    Filutowicz, M.3
  • 44
    • 0028091993 scopus 로고
    • Binding of DnaA protein to a replication enhancer counteracts the inhibition of plasmid R6K γ origin replication mediated by elevated levels of R6K π protein
    • Wu, F., Levchenko, I. & Filutowicz, M. (1994). Binding of DnaA protein to a replication enhancer counteracts the inhibition of plasmid R6K γ origin replication mediated by elevated levels of R6K π protein. J. Bacteriol. 176, 6795-6801.
    • (1994) J. Bacteriol. , vol.176 , pp. 6795-6801
    • Wu, F.1    Levchenko, I.2    Filutowicz, M.3
  • 45
    • 0028970495 scopus 로고
    • A DNA segment conferring stable maintenance on R6K γ origin core replicons
    • Wu, F., Levchenko, I. & Filutowicz, M. (1995). A DNA segment conferring stable maintenance on R6K γ origin core replicons. J. Bacteriol. 177, 6338-6345.
    • (1995) J. Bacteriol. , vol.177 , pp. 6338-6345
    • Wu, F.1    Levchenko, I.2    Filutowicz, M.3


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