Detection of the disease severity-related molecular differences among new Thai dengue-2 isolates in 1993, based on their structural proteins and major non-structural protein NS1 sequences

Microbiology and Immunology

Volumn 40, Issue 3, 1996, Pages 205-216

  Kyaw Zin Thant, ^a   Morita, Kouichi ^a   Igarashi, Akira ^a  

^a NAGASAKI UNIVERSITY   (Japan)

Author keywords

Dengue 2 virus; Sequences; Thailand; Virulence

Indexed keywords

COMPLEMENTARY DNA; STRUCTURAL PROTEIN; VIRUS PROTEIN; VIRUS RNA;

ARTICLE; DENGUE; DENGUE VIRUS; DISEASE SEVERITY; NONHUMAN; NUCLEOTIDE SEQUENCE; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; SEQUENCE HOMOLOGY; SEROTYPING; STRAIN DIFFERENCE; THAILAND; VIRUS GENOME; VIRUS ISOLATION; VIRUS VIRULENCE;

EID: 0029915885     PISSN: 03855600     EISSN: None     Source Type: Journal    
DOI: 10.1111/j.1348-0421.1996.tb03336.x     Document Type: Article

References (74)

1. Blok, J., Henchal, E.A., and Gorman, M.B. 1984. Comparison of dengue viruses and some other flaviviruses by cDNA-RNA hybridization analysis and detection of a close relationship between dengue virus serotype 2 and Edge Hill virus. J. Gen. Virol. 65: 2173-2181.
2. Blok, J., Samuel, S., Gibbs, A.J., and Vitarana, U.T. 1989. Variation of the nucleotide and encoded amino acid sequences of the envelope gene from eight dengue-2 viruses. Arch. Virol. 105: 39-53.
3. Blok, J., Gibbs, A.J., Mc William, S.M., and Vitarana, U.T. 1991. NS1 gene sequences from eight dengue-2 viruses and their evolutionary relationships with other dengue-2 viruses. Arch. Virol. 118: 209-223.
4. Blok, J., Mc William, S.M., Butler, H.C., Gibbs, A.J., Weiller, G., Herring, B.L., Hemsley, A.C., Aaskov, J.G., Yoksan, S., and Bhamarapravati, N. 1992. Comparison of a dengue-2 virus and its candidate vaccine derivative: sequence relationships with the Flaviviruses and other viruses. Virology 187: 573-590.
5. Buonagurio, D.A., Nakada, S., Parvin, J.D., Krystal, M., Palese, P., and Fitch, W.M. 1986. Evolution of human influenza A viruses over 50 years: rapid, uniform rate of change in NS gene. Science 232: 980-982.
6. Calisher, C.H., Karabatsos, N., Dalrymple, J.M., Shope, R.E., Porterfield, J.S., Westaway, E.G., and Brandt, W.E. 1989. Antigenic relationships between flaviviruses as determined by cross-neutralization tests with polyclonal antisera. J. Gen. Virol. 70: 37-43.
7. Cecilia, D., and Gould, E.A. 1991. Nucleotide changes responsible for loss of neuroinvasiveness in Japanese encephalitis virus neutralization-resistant mutants. Virology 181: 70-77.
8. Clark, C.G., and Diamond, L.S. 1994. Pathogenicity, virulence and Entamoeba histolytica. Parasitol. Today 10: 46-47.
9. Davis, N.L., Fuller, F.J., Dougherty, W.G., Olmsted, R.A., and Johnston, R.E. 1986. A single nucleotide change in the E2 glycoprotein of Sindbis virus affects penetration rate in cell culture and virulence in neonatal mice. Proc. Natl. Acad. Sci. U.S.A. 83: 6771-6775.
10. Deubel, V., Kinney, R.M., and Trent, D.W. 1986. Nucleotide sequence and deduced amino acid sequence of the structural proteins of dengue type 2 virus, Jamaica genotype. Virology 155: 365-377.
11. Deubel, V., Kinney, R.M., and Trent, D.W. 1988. Nucleotide sequence and deduced amino acid sequence of the non-structural proteins of dengue type 2 virus, Jamaica genotype: comparative analysis of the full-length genome. Virology 165: 234-244.
12. Deubel, V., Nogueira, R.M., Drouet, M.T., Zeller, H., Reynes, J.M., and Ha, D.Q. 1993. Direct sequencing of genomic cDNA fragments amplified by the polymerase chain reaction for molecular epidemiology of dengue-2 viruses. Arch. Virol. 129: 197-210.
13. Duangchanda, S., Tanaka, M., Morita, K., Rojanasuphot, S., and Igarashi, A. 1994. Comparative nucleotide and deduced amino acid sequence of the envelope glycoprotein gene among three dengue virus type 2 strains isolated from patients with different disease severities in Maha Sarakham, Northeast Thailand. Southeast Asian J. Trop. Med. Publ. Hlth. 25: 243-251.
14. Eckels, K.H., Harrison, V.R., Summers, P.L., and Russel, P.K. 1980. Dengue 2 vaccine: preparation from a small-plaque virus clone. Infect. Immun. 27: 175-181.
15. Fong, M.Y., Koh, C.L., Samuel, S., Pang, T., and Lam, S.K. 1990. Nucleotide sequences of the nonstructural protein NS1 gene of three dengue 2 viruses M1, M2 and M3, isolated in Malaysia from patients with dengue haemorrhagic fever, dengue shock syndrome and dengue fever, respectively. Nucleic Acids Res. 18: 1642.
16. Fu, J., Tan, B.H., Yap, E.H., Chan, Y.C., and Tan, Y.H. 1992. Full-length cDNA sequence of dengue type 1 virus (Singapore strain S 275/90). Virology 188: 953-958.
17. Gladstone, G.P. 1970. p. 823-834. In Florey, H.W. (ed), General pathology, 4th ed, W.B. Saunders, Philadelphia.
18. Gruenberg, A., Woo, W.S., Biedrzycka, A., and Wright, P.J. 1988. Partial nucleotide sequence and deduced amino acid sequence of the structural proteins of dengue virus type 2, New Guinea C and PUO-218 strains. J. Gen.Virol. 69: 1391-1398.
19. Gubler, D.J. 1991. Dengue haemorrhagic fever: a global update (Editorial). Virus Information Exchange Newsletter 8: 2-3.
20. Hahn, Y.S., Galler, R., Hunkapiller, T., Dalrymple, J.M., Strauss, J.H., and Strauss, E.G. 1988. Nucleotide sequence of dengue 2 RNA and comparison of the encoded proteins with those of other flaviviruses. Virology 162: 167-180.
21. Halstead, S.B., Chow, J.S., and Marchette, N.J. 1973. Immunological enhancement of dengue virus replication. Nature 243: 24-26.
22. Halstead, S.B. 1980. Dengue hemorrhagic fever - a public health problem and a field for research. Bull.WHO 58: 1-21.
23. Halstead, S.B. 1981. The pathogenesis of dengue: molecular epidemiology in infectious disease. Am. J. Epidemiol. 114: 632-648.
24. Halstead, S.B. 1984. Selective primary health care: strategies for control of disease in the developing world. XI. Dengue. Rev. Infect. Dis. 6: 251-264.
25. Halstead, S.B., Eckels, K.H., Purvatana, R., Larson, L.K., and Marchette, N.J. 1984. Selection of attenuated dengue 4 viruses by serial passage in primary kidney cells. IV. Characterization of a vaccine candidate in fetal rhesus lung cells. Am. J. Trop. Med. Hyg. 33: 679-684.
26. Hanahan, D. 1983. Studies on translation of E. coli with plasmid. J. Mol. Biol. 166: 557-580.
27. Hasegawa, H., Yoshida, M., Shiosaka, T., Fujita, S., and Kobayashi, Y. 1992. Mutation in the envelope protein of Japanese encephalitis virus affect entry into cultured cells and virulence in mice. Virology 191: 158-165.
28. Holzmann, H., Heinz, F.X., Mandl, C.W., Guirakhoo, F., and Kunz, C. 1990. A single amino acid substitution in the envelope protein E of tick-borne encephalitis leads to attenuation in the mouse model. J. Virol. 64: 5156-5159.
29. Igarashi, A. 1978. Isolation of a Singh's Aedes albopictus cells clone sensitive to dengue and Chikungunya viruses. J. Gen. Virol. 40: 531-544.
30. Irie, K., Mohan, P.M., Sasaguri, Y., Putnak, R., and Padmanabhan, R. 1989. Sequence analysis of cloned dengue virus type 2 genome (New Guinea-C strain). Gene 75: 197-211.
31. Kawamura, N., Kohara, M., Abe, S., Komatsu, T., Tago, K., Arita, M., and Nomoto, A. 1989. Determinates in the 5′-noncoding region of polio-virus Sabin 1 RNA that influence the attenuation phenotype. J. Virol. 63: 1302-1309.
32. Kerschner, J.H., Vorndam, V., Monath, T.P., and Trent, D.W. 1986. Genetic and epidemiological studies of dengue type 2 viruses by hybridization using synthetic deoxyoligo nucleotides as probes. J. Gen. Virol. 69: 2645-2661.
33. Kliks, S.C., Nimmannitya, S., Nisalak, A., and Burke, D.S. 1988. Evidence that maternal antibodies are important in the development of dengue hemorrhagic fever in infants. Am. J. Trop. Med. Hyg. 38: 411-419.
34. Lewis, J.A., Chang, G.J., Lanciotti, R.S., Kinney, R.M., Mayer, L.W., and Trent, D.W. 1993. Phylogenetic relationships of dengue-2 viruses. Virology 197: 216-224.
35. Lobigs, M., Usha, R., Nestorowicz, A., Marshall, I.D., Weir, R.C., and Dalgarno, L. 1990. Host cell selection of Murray Valley encephalitis virus variants altered at an RGD sequence in the envelope protein and in mouse virulence. Virology 176: 587-595.
36. Lustig, S., Jackson, A.C., Hahn, C.S., Griffin, D.E., Strauss, E.G., and Strauss, J.H. 1988. Molecular basis of Sindbis virus neurovirulence in mice. J. Virol. 62: 2329-2336.
37. Mackow, E., Makino, Y., Zhao, B., Zhang, M., Markoff, L., Buckler-White, A., Guiler, M., Chanock, R., and Lai, C.J. 1987. The nucleotide sequence of dengue type 4 virus: analysis of the genes coding for the nonstructural proteins. Virology 159: 217-228.
38. Mason, P.W., McAda, P.C., Mason, T.L., and Fournier, M.J. 1987. Sequence of the dengue-1 virus genome in the region encoding the three structural proteins and the major non-structural protein NS1. Virology 161: 262-267.
39. Meek, A.D.J., Faragher, S.G., Weir, R.C., and Dalgarno, L. 1989. Genetic and phenotypic studies on Ross River virus variants of enhanced virulence selected during mouse passage. Virology 172: 399-407.
40. Monath, T.P. 1986. Pathology of Flaviviruses, p. 375-440. In Schlesinger, S., and Schlesinger, M.A. (eds), The Togaviridae and Flaviviridae, Plenum Press, New York.
41. Monath, T.P., Wands, J.R., Hill, I.J., Brown, N.V., Marciniak, R.A., Wong, M.A., Gentry, M.K., Burke, D.S., Grant, J.A., and Trent, D.W. 1986. Geographic classification of dengue-2 virus strains by antigen signature analysis. Virology 154: 313-324.
42. Morita, K., Tanaka, M., and Igarashi, A. 1991. Rapid identification of dengue virus serotypes by using polymerase chain reaction. J. Clin. Microbiol. 29: 2107-2110.
43. Moss, E.G., O'Neill, R.E., and Racaniello, V.R. 1989. Mapping of attenuating sequences of an avirulent poliovirus type 2 strain. J. Virol. 63: 1884-1890.
44. Nichol, S.T., Rowe, J.E., and Fitch, W.M. 1989. Glycoprotein evolution of vesicular stomatitis virus New Jersey. Virology 168: 281-291.
45. Nimmannitya, S. 1987. Clinical spectrum and management of dengue haemorrhagic fever. Southeast Asian J. Trop. Med. Publ. Hlth. 18: 392-397.
46. Nomoto, A., Kohara, M., Kuge, S., Kawamura, N., Arita, M., Komatsu, T., Abe, S., Semler, B.L., Wimmer, E., and Itoh, H. 1987. Study on virulence of poliovirus type 1 using in vitro modified viruses. UCLA Symp. Mol. Cell. Biol. 54: 437-452.
47. Osatomi, K., and Sumiyoshi, H. 1990. Complete nucleotide sequence of dengue type 3 virus genome RNA. Virology 176: 643-647.
48. Porterfield, J.S. 1980. Antigenic characteristics and classification of Togaviridae, p. 13-46. In Schlesinger, R.W. (ed), The Togaviridae, Academic Press, New York & London.
49. Racaniello, V.R., and Meriam, C. 1986. Poliovirus temperature sensitive mutant containing a single nucleotide deletion in the 5′-noncoding region of the viral RNA. Virology 155: 498-507.
50. Rice, C.M., Lenches, E.M., Eddy, S.R., Shin, S.J., Sheets, R.L, and Strauss, J.H. 1985. Nucleotide sequence of yellow fever virus: implications for flavivirus gene expression and evolution. Science 229: 726-735.
51. Rice, C.M., Strauss, E.G., and Strauss, J.H. 1986. Structure of the flavivirus genome, p. 279-327. In Schlesinger, S., and Schlesinger, M.A. (eds), The Togaviridae and Flaviviridae, Plenum Press, New York.
52. Rico-Hesse, R., Pallansch, M.A., Nottay, B.K., and Kew, O.M. 1987. Geographic distribution of wild poliovirus type 1 genotypes. Virology 160: 311-322.
53. Rico-Hesse, R. 1990. Molecular evolution and distribution of dengue viruses type 1 and 2 in nature. Virology 174: 479-493.
54. Rosen, L. 1977. The Emperor's new clothes revisited, or reflections on the pathogenesis of dengue hemorrhagic fever. Am. J. Trop. Med. Hyg. 26: 337-343.
55. Russel, P.K., and Nisalak, A. 1967. Dengue virus identification by the plaque reduction neutralization test. J.Immunol. 99: 291-296.
56. Sambrook, J., Fritsch, E.F., and Maniatis, T. 1989. Molecular cloning: a laboratory manual, 2nd ed, Cold Spring Harbor Laboratory, Cold Spring Harbor, New York.
57. Samuel, S., Koh, C.L., Blok, J., Pang, T., and Lam, S.K. 1989. Nucleotide sequence of the envelope protein gene of a Malaysian dengue-2 virus isolated from a patient with dengue haemorrhagic fever. Nucleic Acids Res. 17: 8875.
58. Samuel, S., Koh, C.L., Blok, J., Pang, T., and Lam, S.K. 1989. Nucleotide sequence of the envelope protein gene of a Malaysian dengue-2 virus isolated from a patient with dengue fever. Nucleic Acids Res. 17: 8887.
59. Samuel, S., Koh, C.L., Blok, J., Pang, T., and Lam, S.K. 1989. Nucleotide sequence of the envelope protein gene of a Malaysian dengue-2 virus isolated from a patient with dengue shock syndrome. Nucleic Acids Res. 17: 8888.
60. Samuel, S., Koh, C.L., Pang, T., and Lam, S.K. 1990. Nucleotide and encoded amino acid sequences of the capsid protein gene of three dengue-2 viruses isolated in Malaysia from patients with dengue haemorrhagic fever, dengue shock syndrome or dengue fever. Nucleic Acids Res. 18: 1904.
61. Samuel, S., Koh, C.L., Pang, T., and Lam, S.K. 1990. Nucleotide and encoded amino acid sequences of the membrane protein precursor and the membrane protein genes of three dengue-2 viruses isolated in Malaysia from patients with dengue haemorrhagic fever, dengue shock syndrome or dengue fever. Nucleic Acids Res. 18: 1905.
62. Sanger, F., Nicklen, S., and Coulson, A.R. 1977. DNA sequencing with chain-terminating inhibitors. Proc. Natl. Acad. Sci. U.S.A. 74: 5463-5467.
63. Tanaka, M. 1993. Rapid identification of flavivirus using the polymerase chain reaction. J. Virol. Methods 41: 311-322.
64. Thant, K.Z., Morita, K., and Igarashi, A. 1995. Sequences of E/NS1 gene junction from four dengue-2 viruses of Northeastern Thailand and their evolutionary relationships with other dengue-2 viruses. Microbiol. Immunol. 39: 581-590.
65. Theiler, M., and Smith, H.H. 1937. Effect of prolonged cultivation in vitro upon pathogenicity of yellow fever virus. J. Exp. Med. 65: 767-786.
66. Trent, D.W., Grant, J.A., Rosen, L., and Monath, T.P. 1983. Genetic variation among dengue 2 viruses of different geographic origin. Virology 128: 271-284.
67. Trent, D.W., Grant, J.A., Monath, T.P., Manske, C.L., Corina, M., and Fox, G.E. 1989. Genetic variation and microevolution of dengue 2 viruses in Southeast Asia. Virology 172: 523-535.
68. Walker, P.J., Henchal, E.A., Blok, J., Repik, P.M., Henchal, L.S., Burke, D.S., Robbins, S.J., and Gorman, B.M. 1988. Variation in dengue type 2 viruses isolated in Bangkok during 1980. J. Gen. Virol. 69: 591-602.
69. Westaway, E.G., Brinton, M.A., Gaidamovich, S.Ya., Horzinek, M.C., Igarashi, A., Kaariainen, L., Lvov, D.K., Porterfield, J.S., Russell, P.K., and Trent, D.W. 1985. Flaviviridae. Intervirology 24: 183-192.
70. Westrop, G.D., Wareham, K.A., Evans, D.M.A., Dunn, G., Minor, P.D., Magrath, D.I., Taffs, F., Marsden, S., Skinner, M.A., Sciild, G.C., and Almond, J.W. 1989. Genetic basis of attenuation of the Sabin type 3 oral polio vaccine. J. Virol. 63: 1338-1344.
71. World Health Organization. 1986. Dengue hemorrhagic fever: diagnosis, treatment and control. WHO, Geneva.
72. Yang, P.Y., Kautner, I., Koh, C.L., and Lam, S.K. 1994. Nucleotide and deduced amino acid sequence of genes encoding the structural and nonstructural NS1 proteins of a dengue-2 virus isolated in China. Virus Genes 8: 71-74.
73. Yu, Y.X., Zhang, G.M., Guo, Y.P., Ao, J., and Li, H.M. 1988. Safety of a live-attenuated Japanese encephalitis virus vaccine (SA-14-14-2) for children. Am. J. Trop. Med. Hyg. 39: 214-217.
74. Zhao, B., Mackow, E., Buckler-White, A., Markoff, L., Chanock, R.M., Lai, C.J., and Makino, Y. 1986. Cloning full-length dengue type 4 viral DNA sequences: analysis of genes encoding for structural proteins. Virology 155: 77-88.