Substrate structure influences binding of the non-histone protein HMG-I(Y) to free and nucleosomal DNA

Biochemistry

Volumn 35, Issue 15, 1996, Pages 5063-5074

  Reeves, Raymond ^a   Wolffe, Alan P ^b  

^a WASHINGTON STATE UNIVERSITY   (United States)

^b EUNICE KENNEDY SHRIVER NATIONAL INSTITUTE OF CHILD HEALTH AND HUMAN DEVELOPMENT   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; BINDING AFFINITY; DNA SEQUENCE; DNA STRUCTURE; MEMBRANE BINDING; PRIORITY JOURNAL; PROTEIN BINDING; PROTEIN FOLDING;

ANIMALS; BASE SEQUENCE; BINDING SITES; CHICKENS; DEOXYRIBONUCLEASE I; DNA; HIGH MOBILITY GROUP PROTEINS; HMGA1A PROTEIN; HYDROLYSIS; HYDROXYL RADICAL; MOLECULAR SEQUENCE DATA; NUCLEOSOMES; SUBSTRATE SPECIFICITY;

EID: 0029915384     PISSN: 00062960     EISSN: None     Source Type: Journal    
DOI: 10.1021/bi952424p     Document Type: Article

References (96)

1. Abdulkadir, S. A., Krishna, S., Thanos, D., Maniatis, T., Strominger, J. L., & Ono, S. J. (1995) J. Exp. Med. 182, 487-500.
2. Archer, T. K., Cordingley, M. G., Wolford, R. G., & Hager, G. L. (1991) Mol. Cell. Biol. 11, 688-698.
3. Ashar, H. R., Fejzo, M. S., Tkachenko, A., Zhou, X., Fletcher, J. A., Weremowicz, S., Morton, C. C., & Chada, K. (1995) Cell 82, 57-65.
4. Ausubel, F., Brent, R., Kingston, R., Moore, D., Seidman, J., Smith, J., & Struhl, J. (1988) Current Protocols in Molecular Biology; John Wiley & Sons, New York.
5. Brown, D. D. (1984) Cell 37, 359-365.
6. Bruckner, I., Dlakic, M., Savic, A., Susic, S., Pongor, S., & Suck, D. (1993) Nucleic Acids Res. 21, 1025-1029.
7. Burkhoff, A. M., & Tullius, T. D. (1987) Cell 48, 935-943.
8. Bustin, M., & Reeves, R. (1996) Prog. Nucleic Acid Res. Mol. Biol. (in press).
9. Calladine, C. R. (1982) J. Mol. Biol. 161, 343-352.
10. Camerini-Otero, R. D., Sollner-Webb, B., & Felsenfeld, G. (1976) Cell 8, 333-347.
11. Chuprina, V. P. (1985) FEBS Lett. 186, 98-102.
12. Clark, D. J., & Wolffe, A. P. (1991) EMBO J. 10, 3419-3428.
13. Claus, P., Schulze, E., & Wisniewski, J. R. (1994) J. Biol. Chem. 269, 33042-33048.
14. Coll, C. M., Frederick, C. A., Wang, A. H. J., & Rich, A. (1987) Proc. Natl. Acad. Sci. U.S.A. 84, 8385-8389.
15. Cote, J., Quinn, J., Workman, J. L., & Peterson, C. L. (1994) Science 265, 53-60.
16. Disney, J. E., Johnson, K. R., Magnuson, N. S., Sylvester, S., & Reeves, R. (1989) J. Cell. Biol. 109, 1975-1982.
17. Drew, J. R. (1984) J. Mol. Biol. 176, 535-557.
18. Drew, H. R., & Dickerson, R. E. (1981) J. Mol. Biol. 151, 535-556.
19. Durrin, L. K., Mann, R. K., & Grunstein, M. (1992) Mol. Cell. Biol. 12, 1621-1629.
20. Elton, T. S. & Reeves, R. (1986) Anal. Biochem. 146, 448-460.
21. Evans, J. N. S., Nissen, M. S., & Reeves, R. (1992) Bull. Magn. Reson. 14, 171-174.
22. Evans, J. N. S., Zajicek, J., Nissen, M. S., Munske, G., Smith, V., & Reeves, R. (1995) Int. J. Pept. Protein Res. 45, 554-560.
23. Felsenfeld, G. (1992) Nature (London) 355, 219-224.
24. Fratini, A. V., Kopka, M. L., Drew, H. R., & Dickerson, R. E. (1982) J. Biol. Chem. 257, 14686-14707.
25. Friedmann, M., Holth, L. T., Zoshbi, H. Y., & Reeves, R. (1993) Nucleic Acids Res. 21, 4259-4267.
26. Gale, J. M., & Smerdon, M. J. (1988) J. Mol. Biol. 204, 949-958.
27. Geierstanger, B. H., Volkman, B. F., Kremer, W., & Wemmer, D. E. (1994) Biochemistry 33, 5347-5355.
28. Giancotti, G. V., Bandiera, A., Buratti, E., Sautiere, P., Cary, P., Crane-Robinson, C., Coles, B., & Goodwin, G. H. (1991) Nucleic Acids Res. 19, 6793-6797.
29. Goodsell, D. S., Kopka, M. L., Cascio, D., & Dickerson, R. E. (1993) Proc. Natl. Acad. Sci. U.S.A. 90, 2930-2934.
30. Grosschedl, R., Klaus, G., & Pagel, J. (1994) Trends Genet. 10, 94-100.
31. Hayes, J. J., Tullius, T. D., & Wolffe, A. P. (1990) Proc. Natl. Acad. Sci. U.S.A. 87, 7405-7409.
32. Hayes, J. J., Clark, D. J., & Wolffe, A. P. (1991a) Proc. Natl. Acad. Sci. U.S.A. 88, 6829-6833.
33. Hayes, J. J., Bashkin, J., Tullius, T. D., & Wolffe, A. P. (1991b) Biochemistry 30, 8434-8440.
34. Imbalzano, A. N., Kwon, H., Green, M. R., & Kingston, R. E. (1994) Nature (London) 370, 481-485.
35. Izban, M. G., & Luse, D. S. (1991) Genes Dev. 5, 683-696.
36. John, S., Reeves, R., Lin, J.-X., Child, R., Leiden, J. M., Thompson, C. B., & Leonard, W. J. (1995) Mol. Cell Biol. 15, 1786-1796.
37. Johnson, K. R., Lehn, D. A., Elton, T. S., Barr, P. J., & Reeves, R. (1988) J. Biol. Chem. 263, 1833-18342.
38. Johnson, K. R., Lehn, D. A., & Reeves, R. (1989) Mol. Cell. Biol. 9, 2114-2123.
39. Klug, A., & Lutter, L. C. (1981) Nucleic Acids Res. 9, 4267-4283.
40. Kwon, H., Imbalzano, A. N., Khavarl, P. A., Kingston, R. E., & Green, M. R. (1994) Nature (London) 370, 477-481.
41. Lee, D. Y., Hayes, J. J., Pruss, D., & Wolffe, A. P. (1993) Cell 72, 73-84.
42. Leger, H., Sock, E., Renner, K., Grummt, F., & Wegner, M. (1995) Mol. Cell. Biol. 15, 3738-3747.
43. Lehn, D., Elton, T., Johnson, K., & Reeves, R. (1988). Biochem. Int. 16, 963-971.
44. Libertini, L. J., & Small, E. W. (1980) Nucleic Acids Res. 8, 3517-3534.
45. Lorch, Y., LaPointe, J. W., & Kornberg, R. D. (1992) Genes Dev. 6, 2282-2287.
46. Low, C. M. L., Drew, H. R., & Waring, M. J. (1986) Nucleic Acids Res. 6785-6801.
47. Meersseman, G., Penning, S., & Bradbury, E. M. (1991) J. Mol. Biol. 220, 89-100.
48. Morse, R. H. (1989) EMBO J. 8, 2343-2351.
49. Morse, R. H. (1993) Science 262, 1563-1566.
50. Nelson, H. C. M., Finch, J. T., Luisi, B. F., & Klug, A. (1987) Nature 330, 221-226.
51. Nissen, M. S., & Reeves, R. (1995) J. Biol. Chem. 270, 4355-4360.
52. Paranjape, S. M., Kamakaka, R. T., & Kadonaga, J. T. (1994) Annu. Rev. Biochem. 63, 265-297.
53. Penning, S., Meersseman, G., & Bradbury, E. M. (1991) J. Mol. Biol. 220, 101-110.
54. Penning, S., Meersseman, G., & Bradbury, E. M. (1994) Proc. Natl. Acad. Sci. U.S.A. 91, 10275-10279.
55. Perlman, T. (1992) Proc. Natl. Acad. Sci. U.S.A. 89, 3884-3888.
56. Perlman, T., & Wrange, O. (1988) EMBO J. 7, 3073-3083.
57. Peterson, C. L., & Herskowitz, I. (1992) Cell 68, 573-583.
58. Pina, B., Bruggemeier, U., & Beato, M. (1990) Cell 60, 719-731.
59. Pruss, D., Reeves, R., Buschman, F. D., & Wolffe, A. P. (1994) J. Biol. Chem. 269, 25031-25041.
60. Radic, M. Z., Saghbini, M., Elton, T. S., Reeves, R., & Hamkalo, B. (1992) Chromosoma 101, 602-608.
61. Reeves, R., & Nissen, M. S. (1990) J. Biol. Chetn. 265, 8573-8582.
62. Reeves, R., & Nissen, M. S. (1993) J. Biol. Chem. 268, 21137-21146.
63. Reeves, R., Elton, T. S., Nissen, M. S., Lehn, D., & Johnson, K. R. (1987) Proc. Natl. Acad. Sci. U.S.A. 84, 6531-6535.
64. Rhodes, D., & Klug, A. (1981) Nature 292, 378-380.
65. Richmond, T. J., Finch, J. T., Rushton, B., Rhodes, D., & Klug, A. (1984) Nature 311, 532-537.
66. Satchwell, S. C., Drew, H. R., & Travers, A. A. (1986) J. Mol. Biol. 191, 659-675.
67. Schild, C., Claret, F.-X., Wahli, W., & Wolffe, A. P. (1993) EMBO J. 12, 423-433.
68. Simon, R. H., & Felsenfeld, G. (1979) Nucleic Acids Res. 6, 689-696.
69. Simpson, R. T. (1991) Prog. Nucleic Acids Res. Mol. Biol. 40, 143-184.
70. Solomon, M., Strauss, F., & Varshavsky, A. (1986) Proc. Natl. Acad. Sci. U.S.A. 83, 1276-1280.
71. Ramsay, N., Felsenfeld, G., Rushton, B. M., & McGhee, J. D. (1984) EMBO J. 3, 2605-2611.
72. Russnak, R. H., Candido, E. P. M., & Astell, C. R. (1988) J. Biol. Chem. 263, 6392-6399.
73. Saitoh, Y., & Laemmli, U. K. (1994) Cell 76, 609-622.
74. Schrader, T. E., & Crothers, D. M. (1990) J. Mol. Biol. 216, 69-84.
75. Simon, R., & Felsenfeld, G. (1979) Nucleic Acids Res. 6, 689-696.
76. Skalnik, D. G., & Neufeld, E. J. (1992) Biochem. Biophys. Res. Commun. 187, 563-569.
77. Stein, A. (1979) J. Mol. Biol. 130, 103-134.
78. Svaren, J., & Horz, W. (1993) Curr. Opin. Gen. Dev. 3, 219-225.
79. Tatchell, K., & van Holde, K. E. (1977) Biochemistry 16, 5295-5303.
80. Thanos, D., Du, W., & Maniatis, T. (1994) Cold Spring Harbor Symp. Quant. Biol. 58, 73-81.
81. Travers, A. A. (1989) Annu. Rev. Biochem. 58, 427-452.
82. Travers, A. A., & Klug, A. (1987) Philos. Trans. R. Soc. London B: Biol. Sci. 317, 537-561.
83. Tsukiyama, T., Becker, P. B., & Wu, C. (1994) Nature 367, 525-532.
84. Tullius, T. D., Dombroski, B. A., Churchill, M. E. A., & Kam, L. (1987) Methods Enzvmol. 155, 537-558.
85. Ura, K., Hayes, J. J., & Wolffe, A. P. (1995) EMBO J. 14, 3752-3765.
86. Vettese-Dadey, M., Walter, P., Chen, H., Juan, L.-J., & Workman. J. L. (1994) Mol. Cell. Biol. 14, 970-981.
87. Wolffe, A. P. (1992) Chromatin: Structure and Function, 213 pp. Academic Press, New York.
88. Wolffe, A. P. (1994a) Cell 77, 15-18.
89. Wolffe, A. P. (1994b) Science 264, 1100-1101.
90. Wolffe, A. P., & Drew, H. R. (1989) Proc. Natl. Acad. Sci. U.S.A. 86, 9817-9821.
91. Wolffe, A. P., & Hayes, J. J. (1993) Methods Mol. Genet. 2, 314-330.
92. Workman, J. L., & Brickman, A. R. (1993) Trends Biochem. Sci. 18, 90-95.
93. Workman, J. L., & Kingston, R. E. (1992) Science 258, 1780-1784.
94. Workman, J. L., Taylor, I. C. A., & Kingston, R. E. (1991) Cell 64, 533-544.
95. Yoshida, S. K., Peterson, S. L., Herskowitz, I., & Yamamoto, K. R. (1992) Science 258, 1598-1604.
96. Zhou, X., Benson, K. F., Ashar, H. R., & Chada, K. (1995) Nature 376, 771-774.