Computational model for protein-mediated biomineralization of the diatom frustule

Marine Biology

Volumn 126, Issue 3, 1996, Pages 353-360

  Lobel, K D ^a   West, J K ^a   Hench, L L ^a  

^a University of Florida   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

BACILLARIOPHYTA;

EID: 0029911886     PISSN: 00253162     EISSN: None     Source Type: Journal    
DOI: 10.1007/BF00354617     Document Type: Article

References (44)

1. Addadi L, Moradian J, Shay E, Maroudas NG, Weiner S (1987) A chemical model for the cooperation of sulfates and carboxylates in calcite crystal nucleation: relevance to biomineralization. Proc natn Acad Sci USA 84: 2732-2736
2. Aelion R, Loebel A, Eirich F (1950) Hydrolysis of ethyl silicate. J Am chem Soc 72: 5705-5712
3. Azam F, Hemmingsen BB, Volcani BE (1974) Role of silicon in diatom metabolism. V. silicic acid transport and metabolism in the heterotrophic diatom Nitzschia alba. Archs Microbiol 97: 103-114
4. Blakey PR, Earland C, Stell JGP (1963) Calcification of keratin. Nature, Lond 198: p. 481
5. Burggraf LW, Davis LP, Gordon MS (1992) Neutral and amonic hypervalent silica complexes in silanol polymerization. In: Uhlmann DR, Ulrich DR (eds) Ultrastructure processing of advanced materials. Wiley, New York, pp 47-55
6. Carlisle EM (1974) Silicon as an essential element. Fedn Proc Fedn Am Socs exp Biol 33: 1758-1766
7. Crenshaw MA (1991) Mineral induction by immobilized polyanions. In: Suge S, Nakahara H (eds) Mechanisms and phylogeny of mineralization in biological systems. Springer-Verlag, Tokyo, pp 101-105
8. Dewar MJS, Jie C (1987) Organometallics. J Am chem Soc 6: 1486-1490
9. Dewar MJS, Zoebisch EG, Healy EF, Stewart JP (1985) AM1: a new general purpose quantum mechanical molecular model. J Am chem Soc 107: 3902-3909
10. Fraser RDB, MacRae TP (1973) Conformation in fibrous proteins and related synthetic polypeptides. Academic Press, New York
11. Hartwig BA, Hench LL (1972) Epitaxy of poly-1-alanine on α-quartz and glass-ceramic surfaces. J biomed Mater Res 6: 413-423
12. Hecky RE, Mopper K, Kilham P, Degens ET (1973) The amino acid and sugar composition of diatom cell-walls. Mar Biol 19: 323-331
13. Hench LL (1992) The kinetics of bioactive ceramics. Part I. Reaction rates. In: Hulbert JE, Hulbert SF (eds) Bioceramics. Vol. 3. Rose-Hulman Institute of Technology. Terre Haute, pp 43-45
14. Hench LL (1994) Biochemical processing of materials: a review. In: Cheetham AK, Brinker CJ, Mecartney ML, Sanchez C (eds) Better ceramics through chemistry. VI. Materials Research Society, Pittsburgh, pp 993-1004
15. Hench LL, West JK (1990) The sol-gel process. Chem Rev 90: 33-72
16. Hildebrand M, Higgins DR, Busser K, Volcani BE (1993) Silicon-responsive cDNA clones isolated from the marine diatom Cylindrotheca fusiformis. Gene 132: 213-218
17. Iler RK (1979) The chemistry of silica. Wiley, New York
18. Keefer KD (1984) The effect of hydrolysis conditions on the structure and growth of silicate polymers. In: Brinker CJ, Clark DE, Ulrich DR (eds) Better ceramics through chemistry. North-Holland, New York, pp 15-24
19. Kelts LW, Armstrong NJ (1989) A silicon-29 NMR study of the structural intermediates in low pH sol-gel reactions. J Mater Res 4: 423-433
20. Li C-W, Volcani BE (1984) Aspects of silicification in wall morphogenesis of diatoms. Phil Trans R Soc (Ser B) 304: 519-528
21. Lowenstam HA, Weiner S (1989) On biomineralization. Oxford University Press, New York
22. Mann S, Archibald DD, Didymus JM, Douglas T, Heywood BR, Meldrum FC, Reeves NJ (1993) Crystallization at inorganic-organic interfaces: biominerals and biomimetic synthesis. Science, NY 261: 1286-1292
23. Mark HF (1985) Biopolymers. In: Graber E, Klingsberg A, Siegel PM (eds) Concise encyclopedia of chemical technology. Wiley, New York, pp 168-170
24. Mathews CK, van Holde KE (1990) Biochemistry. Benjamin Cummings, New York
25. Pautard FGE (1963) Mineralization of keratin and its comparison with the enamel matrix. Nature, Lond 199: 531-535
26. Perry CC (1989) Chemical studies of biogenic silica. In: Williams RJP (ed) Biomineralization: chemical and biochemical perspectives. Weinheim, New York, pp 223-256
27. Perry CC, Fraser MA, Hughes NP (1991) Macromolecular assemblages in controlled biomineralization. In: Sikes S, Wheeler AP (eds) Surface reactive peptides and polymers. American Chemical Society, Washington, DC, pp 316-339
28. Samata T (1991) Structure and function of the organic matrix in the nacreous layer of Pinctada fucata. In: Suga S, Nakahara H (eds) Mechanisms and phylogeny of mineralization in biological systems. Springer-Verlag, Tokyo, pp 23-27
29. Schwarz K (1974) Recent dietary trace element research, exemplified by tin, fluorine, and silicon. Fedn Proc Fedn Am Socs exp Biol 33: 1748-1757
30. Simkiss K (1991) Amorphous minerals and theories of biomineralization. In: Suga S, Nakahara H (eds) Mechanisms and phylogeny of mineralization in biological systems. Springer-Verlag, Tokyo, pp 375-382
31. Stetler-Stevenson WG, Veis A (1986) Type I collagen shows a specific binding affinity for bovine dentin phosphophoryn. Calcif Tissue im 38: 135-141
32. Sullivan CW (1986) Silicification by diatoms. In: Evered D, O'Connor M (eds) Silicon biochemistry. Wiley, New York, pp 59-86
33. Sullivan CW, Volcani BE (1981) Silicon in the cellular metabolism of diatoms. In: Simpson TL, Volcani BE (eds) Silicon and siliceous structures in biological systems. Springer-Verlag, New York, pp 15-42
34. Swift BM, Wheeler AP (1992) Evidence of an organic matrix from diatom biosilica. J Phycol 28: 202-209
35. Volcani BE (1981) Cell wall formation in diatoms. In: Simpson TL, Volcani BE (eds) Silicon and siliceous structures in biological systems. Springer-Verlag, New York, pp 157-200
36. Wallace S, West JK, Hench LL (1993) Interactions of water with trisiloxane rings. Part I. Experimental analysis. J non-crystalline Solids 152: 101-108
37. Weiss A, Herzog A (1978) Isolation and characterization of a silicon-organic complex from plants. In: Bendz G, Lindqvist I (eds) Biochemistry of silicon and related problems. Plenum Press, New York, pp 109-127
38. West JK, Hench LL (1994) AM-1 molecular orbital calculations of silica-alanine-nitrogen interactions. J biomed Mater Res 29: 625-633
39. West JK, Hench LL (1995) Molecular orbital models of silica. In: BW Wessels, Kaufmann EN, Giordmaine JA, Wachtman JB (eds) Annual review of materials. Annual Reviews Inc., Palo Alto, pp 37-68
40. West JK, Wallace S (1990) Molecular orbital modeling of water adsorption on a tetrasiloxane ring. In: Zelinski BJJ, Brinker CJ, Clark DE, Ulrich DR (eds) Better ceramics through chemistry, IV. Materials Research Society, Pittsburgh, pp 255-260
41. West JK, Wallace S (1992) Raman spectroscopy and quantum molecular orbital studies of the stability of trisiloxane silicate rings with respect to water. In: Hench LL, West JK (eds) Chemical processing of advanced materials. Wiley, New York, pp 159-171
42. West JK, Wallace S (1993) Interactions of water with trisiloxane rings. II. Theoretical analysis. J non-crystalline Solids 152: 109-117.
43. Williams RJP (1984) An introduction to biominerals and the role of organic molecules in their formation. Phil Trans R Soc (Ser B) 304: 411-424
44. Zerner MC (1991) Semi-empirical molecular orbital methods. In: Lipkowitz KB, Boyd DB (eds) Reviews in computational chemistry. II. VCH Publishers, New York, pp 313-365