Evaluation of method for secondary DNA typing of Mycobacterium tuberculosis with pTBN12 in epidemiologic study of tuberculosis

Journal of Clinical Microbiology

Volumn 34, Issue 12, 1996, Pages 3044-3048

  Yang, Zhenhua ^a,b   Chaves, Fernando ^a,b,c   Barnes, Peter F ^d   Burman, William J ^e,g   Koehler, Jane ^f   Eisenach, Kathleen D ^a,b   Bates, Joseph H ^a,b   Cave, M Donald ^a,b  

^a UNIVERSITY OF ARKANSAS FOR MEDICAL SCIENCES   (United States)

^b CENTRAL ARKANSAS VETERANS HEALTHCARE SYSTEM   (United States)

^c Hospital General Penitenciario   (Spain)

^d UNIVERSITY OF SOUTHERN CALIFORNIA   (United States)

^e DENVER HEALTH AND HOSPITAL AUTHORITY   (United States)

^f UNIVERSITY OF CALIFORNIA   (United States)

^g UNIVERSITY OF COLORADO   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; DNA DETERMINATION; DNA FINGERPRINTING; DNA PROBE; EPIDEMIOLOGICAL DATA; GENE INSERTION; GENE SEQUENCE; MEDICAL RECORD; MYCOBACTERIUM TUBERCULOSIS; PRIORITY JOURNAL; TUBERCULOSIS;

MYCOBACTERIUM; MYCOBACTERIUM TUBERCULOSIS;

EID: 0029910689     PISSN: 00951137     EISSN: None     Source Type: Journal    
DOI: 10.1128/jcm.34.12.3044-3048.1996     Document Type: Article

References (35)

1. Alland, D., G. E. Kalkut, A. R. Moss, R. A. McAdam, J. A. Hahn, W. Bosworth, E. Ducker, and B. R. Bloom. 1994. Transmission of tuberculosis in New York City, an analysis by DNA fingerprinting and conventional epidemiologic methods. N. Engl. J. Med. 330:1710-1716.
2. Cave, M. D., K. D. Eisenach, P. F. McDermott, J. H. Bates, and J. T. Crawford. 1941. IS6110: conservation of sequence in the Mycobacterium tuberculosis complex and its utilization in DNA fingerprinting. Mol. Cell. Probes 5:73-80.
3. Chaves, F., Z. Yang, H. El Hajj, M. Alonso, W. J. Burman, K. D. Eisenach, F. Dronda, J. H. Bates, and M. D. Cave. 1996. Usefulness of the secondary probe pTBN12 in DNA fingerprinting of Mycobacterium tuberculosis. J. Clin. Microbiol. 34:1118-1123.
4. Chevrel-Dellagi, D., A. Abderrahman, R. Haltiti, H. Koubaji, B. Gicquel, and K. Dellagi. 1993. Large-scale DNA fingerprinting of Mycobacterium tuberculosis strains as a tool for epidemiological studies of tuberculosis. J. Clin. Microbiol. 31:2446-2450.
5. Collins, D. M., and D. M. Stephens. 1991. Identification of insertion sequence, IS1081. in Mycobacterium bovis. FEMS Microbiol. Lett. 83:11-16.
6. Das, S., C. N. Paramasivan, D. B. Lowrie, R. Prabhakar, and P. R. Narayana. 1995. IS6110 restriction fragment length polymorphism typing of clinical isolates of Mycobacterium tuberculosis from patients with pulmonary tuberculosis in Madras, South India. Tubercle Lung Dis. 76:550-554.
7. Doran, T. J., A. L. M. Hodgson, J. K. Davies, E. Wilshire, and B. Ross. 1992. Characterization of a novel repetitive DNA sequence from Mycobacterium tows. FEMS Microbiol. Lett. 96:179-186.
8. Eisenach, K. D., J. T. Crawford, and J. H. Bates. 1988. Repetitive sequences as probes for Mycobacterium tuberculosis. J. Clin. Microbiol. 26:2240-2245.
9. Feinberg, A. P., and B. Vogelstein. 1983. A technique for radiolabelling DNA restriction fragments to high specific activity. Anal. Biochem. 132:6-13.
10. Fomukong, N., M. Beggs, H. El Hajj, G. Templeton, K. Eisenach, and D. Cave. 1995. Insertion site conservation in the genome of Mycobacterium tuberculosis strains with less than five copies of IS6110, abstr. U-27, p. 121. In Abstracts of 95th General Meeting of the American Society for Microbiology 1995. American Society for Microbiology, Washington, D.C.
11. Genewein, A., A. Telenti, C. Bernasconi, C. Mordasini, S. Weiss, A.-M. Maurer, H. L. Rieder, K. Schopfer, and T. Bodmer. 1993. Molecular approach to identifying route of transmission of tuberculosis in the community. Lancet 342:841-844.
12. Godfrey-Faussett, P., P. R. Mortimer, P. A. Jenkins, and N. G. Stoker. 1992. Evidence of transmission of tuberculosis by DNA fingerprinting. Br. Med. J. 305:221-223.
13. Groenen, P. M. A., A. E. Bunschoten, D. van Soolingen, and J. D. A. van Embden. 1993. Nature of DNA polymorphism in the direct repeat cluster of Mycobacterium tuberculosis; application for strain differentiation by a novel typing method. Mol. Microbiol. 10:1057-1065.
14. Hermans, P. W. M., F. Messadi, H. Guebrexabher, D. van Soolingen, P. E. W. de Hass, H. Heersma, H. de Neeling, A. Abdelkader, F. Portaels, D. Frommel, M. Zribi, and J. D. A. van Embden. 1995. Analysis of population structure of Mycobacterium tuberculosis in Ethiopia, Tunisia, and the Netherlands: usefulness of DNA typing for global tuberculosis epidemiology. J. Infect. Dis. 171:1504-1513.
15. Hermans, P. W. M., D. van Soolingen, E. M. Bik, P. E. W. de Haas, J. W. Dale, and J. D. A. van Embden. 1991. Insertion element IS987 from Mycobacterium bovis BCG is located in a hot-spot integration region for insertion elements in Mycobacterium tuberculosis complex strains. Infect. Immun. 59: 2695-2705.
16. Hermans, P. W. M., D. van Soolingen, J. W. Dale, A. R. J. Schuitema, R. A. McAdam, D. Catty, and J. D. A. van Embden. 1990. Insertion element IS986 from Mycobacterium tuberculosis: a useful tool for diagnosis and epidemiology of tuberculosis. J. Clin. Microbiol. 28:2051-2058.
17. Hermans, P. W. M., D. van Soolingen, and J. D. A. van Embden. 1992. Characterization of a major polymorphic tandem repeat in Mycobacterium tuberculosis and its potential use in the epidemiology of Mycobacterium kansasii and Mycobacterium gordonae. J. Bacteriol. 174:4157-4165.
18. Mazurek, G. H., M. D. Cave, K. D. Eisenach, R. J. Wallace, Jr., J. H. Bates, and J. T. Crawford. 1991. Chromosomal DNA fingerprint patterns produced with IS6110 as strain-specific markers for epidemiologic study of tuberculosis. J. Clin. Microbiol. 29:2030-2033.
19. McAdam, R. A., P. W. M. Hermans, D. van Soolingen, Z. F. Zainuddin, D. Catty, J. D. A. van Embden, and J. W. Dale. 1990. Characterization of a Mycobacterium tuberculosis insertion sequence belonging to the IS3 family. Mol. Microbiol. 4:1607-1613.
20. Murray, M. G., and W. F. Thompson. 1980. Rapid isolation of high molecular weight plant DNA. Nucleic Acids Res. 8:4321-4325.
21. Otal, I., C. Martín, V. Vincenl-Lévy-Frebault, D. Thierry, and B. Gicquel. 1991. Restriction fragment length polymorphism analysis using IS6110 as an epidemiological marker in tuberculosis. J. Clin. Microbiol. 29:1252-1254.
22. Ross, B. C., K. Raios, K. Jackson, and B. Dwyer. 1992. Molecular cloning of a highly repeated DNA element from Mycobacterium tuberculosis and its use as an epidemiological tool. J. Clin. Microbiol. 30:942-946.
23. Small, P. M., P. C. Hopewell, S. P. Singh, A. Paz, J. Parsonnet, D. C. Ruston, G. F. Schecter, C. L. Daley, and G. K. Schoolnik. 1994. The epidemiology of tuberculosis in San Francisco, a population-based study using conventional and molecular methods. N. Engl. J. Med. 30:1703-1709.
24. Small, P. M., and J. D. A. van Embden. 1994. Molecular epidemiology of tuberculosis, p. 569-582. In B. R. Bloom (ed.), Tuberculosis: pathogenesis, protection, and control. American Society for Microbiology, Washington, D.C.
25. Templeton, G. L., C. R. Braden, and Investigation Team. 1995. The epidemiologic interpretation of DNA fingerprints of Mycobacterium tuberculosis isolates in Arkansas. Am. J. Respir. Crit. Care Med. 151:A666.
26. Thierry, D., M. D. Cave, K. D. Eisenach, J. T. Crawford, J. H. Bates, B. Gicquel, and J. L. Guesdon. 1990. IS6110, an IS-like element of Mycobacterium tuberculosis complex. Nucleic Acids Res. 18:188.
27. U.S. Department of Health and Human Services/Public Health. 1991. Crack cocaine use among persons with tuberculosis-Contra Costa County. California, 1987-1990. Morbid. Mortal. Weekly Rep. 40:485-486.
28. van Embden, J. D. A., M. D. Cave, J. T. Crawford, J. W. Dale, K. D. Eisenach, B. Gicquel, P. Hermans, C. Martin, R. McAdam, T. M. Shinnick, and P. M. Small. 1993. Strain identification of Mycobacterium tuberculosis by DNA fingerprinting: recommendations for a standardized methodology. J. Clin. Microbiol. 31:406-409.
29. van Embden, J. D. A., D. van Soolingen, P. M. Small, and P. W. M. Hermans. 1992. Genetic markers for the epidemiology of tuberculosis. Res. Microbiol. 143:385-391.
30. van Soolingen, D., P. E. W. de Haas, P. W. M. Hermans, P. M. A. Groenen, and J. D. A. van Embden. 1993. Comparison of various repetitive DNA elements as genetic markers for strain differentiation and epidemiology of Mycobacterium tuberculosis. J. Clin. Microbiol. 31:1987-1995.
31. van Soolingen, D., P. W. M. Hermans, P. E. W. de Haas, D. R. Soll, and J. D. A. van Embden. 1991. Occurrence and stability of insertion sequences in Mycobacterium tuberculosis complex strains: evaluation of an insertion-sequence-dependent DNA polymorphism as a tool in the epidemiology of tuberculosis. J. Clin. Microbiol. 29:2578-2586.
32. Yang, Z. H., P. E. W. de Haas, D. van Soolingen, J. D. A. van Embden, and Å. B. Andersen. 1994. Restriction fragment length polymorphism of Mycobacterium tuberculosis strains isolated from Greenland during 1992: evidence of tuberculosis transmission between Greenland and Denmark. J. Clin. Microbiol. 32:3018-3025.
33. Yang, Z. H., P. E. W. de Haas, C. H. Wachmann, D. van Soolingen, J. D. A. van Embden, and Å. B. Andersen. 1995. Molecular epidemiology of tuberculosis in Denmark in 1992. J. Clin. Microbiol. 33:2077-2081.
34. Yuen, L. K. W., B. C. Ross, K. M. Jackson, and B. Dwyer. 1993. Characterization of Mycobacterium tuberculosis strains from Vietnamese patients by Southern blot hybridization. J. Clin. Microbiol. 31:1615-1618.
35. Zainuddin, Z. F., and J. W. Dale. 1989. Polymorphic repetitive DNA sequences in Mycobacterium tuberculosis detected with a gene probe from a Mycobacterium fortuitum plasmid. J. Gen. Microbiol. 135:2347-2355.