Chromosome landing at the Arabidopsis TORNADO1 locus using an AFLP-based strategy

Molecular and General Genetics

Volumn 253, Issue 1-2, 1996, Pages 32-41

  Cnops, G ^a   Den Boer, B ^a,b   Gerats, A ^a   Van Montagu, M ^a   Van Lijsebettens, M ^a  

^a GHENT UNIVERSITY   (Belgium)

^b INSTITUT DE GÉNÉTIQUE ET DE BIOLOGIE MOLÉCULAIRE ET CELLULAIRE   (France)

Author keywords

AFLP markers; Arabidopsis thaliana; Chromosome landing; Physical mapping; tornado1

Indexed keywords

PLANT DNA;

ARABIDOPSIS; ARTICLE; DNA POLYMORPHISM; GENE AMPLIFICATION; GENE ISOLATION; GENE MAPPING; MARKER GENE; MOLECULAR CLONING; NONHUMAN; PRIORITY JOURNAL; RESTRICTION FRAGMENT LENGTH POLYMORPHISM; TRANSGENIC PLANT; YEAST ARTIFICIAL CHROMOSOME;

ARABIDOPSIS; CHROMOSOME MAPPING; CHROMOSOMES; CHROMOSOMES, ARTIFICIAL, YEAST; CLONING, MOLECULAR; CROSSES, GENETIC; GENES, PLANT; GENETIC MARKERS; PLANTS, GENETICALLY MODIFIED; POLYMERASE CHAIN REACTION; POLYMORPHISM, RESTRICTION FRAGMENT LENGTH;

ARABIDOPSIS; ARABIDOPSIS THALIANA;

EID: 0029906941     PISSN: 00268925     EISSN: None     Source Type: Journal    
DOI: 10.1007/s004380050293     Document Type: Article

References (43)

1. Arondel V, Lemieux B, Hwang I, Gibson S, Goodman HM, Somerville CR (1992) Map-based cloning of a gene controlling omega-3 fatty acid desaturation in Arabidopsis. Science 258: 1353-1355
2. Ballvora A, Hesselbach H, Niewöhner J, Leister D, Salamini F, Gebhardt C (1995) Marker enrichment and high-resolution map of the segment of potato chromosome VII harbouring the nematode resistance gene Grol. Mol Gen Genet 249:82-90
3. Bell CJ. Ecker JR (1994) Assignment of 30 microsatellite loci to the linkage map of Arabidopsis. Genomics 19: 137-144
4. Bouchez D (1995) CIC YAC library: sizing of the clones and determination of clones carrying repeated DNA sequences. In: Anderson M (ed) Weeds world: the international electronic Arabidopsis newsletter, vol. 2. Nottingham Arabidopsis Stock Centre, Nottingham, pp 19-20
5. Cervera M-T, Gusmào J, Steenackers M, Peleman J, Storme V, Vanden Broeck A, Van Montagu M, Boerjan W (1996) Identification of AFLP molecular markers for resistance against Melampsora larici-populina in Populus. Theor Appl Genet (in press)
6. Chang C, Bowman JL, DeJohn AW, Lander ES, Meyerowitz EM (1988) Restriction fragment length polymorphism linkage map for Arabidopsis thaliana. Proc Natl Acad Sci USA 85 : 6856-6860
7. Chang C, Kwok SF, Bleecker AB, Meyerowitz EM (1993) Arubidopsis ethylene-response gene ETR1: similarity of product to two-component regulators. Science 262:539-544
8. Choi S, Creelman RA, Mullet JH, Wing RA (1995) Construction and characterization of a bacterial artificial chromosome library of Arabidopsis thaliana Plant Mol Biol Rep 13: 124-128
9. Creusot F, Fouilloux E, Dron M, Lafleuriel J, Picard G, Billault A, Le Paslier D, Cohen D, Chahouté M-F, Durr A, Fleck J, Gigot C, Camilleri C. Bellini C. Caboche M. Bouchez D(1995) The CIC library: a large insert YAC library for genome mapping in Aruhidopsis thaliana. Plant J 8: 763-770
10. Dellaporta SL, Wood J, Hicks JB (1983) A plant DNA minipreparation: version II. Plant Mol Biol Rep 1: 19-21
11. Ecker JR (1990) PFGH and YAC analysis of the Arabidopsis genome. Methods 1 : 186-194
12. Fabri CO, Schäffner AR (1994) An Arabidopsis thaliana RFLP mapping set to localize mutations to chromosomal regions. Plant J 5: 149-156
13. Franzmann LH, Yoon ES, Meinke DW (1995) Saturating the genetic map of Arabidopsis thaliana with embryonic mutations. Plant J 7: 341-350
14. Gheysen G, Villarroel R, Van Montagu M (1991) Illegitimate recombination in plants: a model for T-DNA integration. Genes Dev 5: 287-297
15. Giraudat J, Hange BM, Valon C, Smalle J, Parcy F, Goodman HM (1992) Isolation of the Arubidopsis ABI3 gene by positional cloning. Plant Cell 4: 1251-1261
16. Grill H, Somerville C (1991) Construction and characterization of a yeast artificial chromosome library of Arabidopsis which is suitable for chromosome walking. Mol Gen Genet 226: 484-490
17. Hauge BM, Giraudat J, Hanley S, Hwang I, Kohchi T, Goodman HM (1990) Physical mapping of the Arabidopsis genome and its applications. J Cell Biochem Suppl 14E: 259 (R004)
18. Hauge BM, Hanley SM, Cartinhour S, Cherry JM, Goodman HM. Koornneef M, Stam P, Chang C, Kempin S, Medrano L, Meyerowitz EM (1993) An integrated genetic RFLP map of the Arabidopsis thaliana genome. Plant J 3: 745-754
19. Hwang I, Kohehi T, Hauge BM, Goodman HM, Schmidt R, Cnops G, Dean C, Gibson S, Iba K, Lemieux B, Arondel V, Danhoff L, Somerville C (1991) Identification and map position of YAC clones comprising one-third of the Arabidopsis genome. Plant J 1 : 367-374
20. Konieczny A, Ausubel FM (1993) A procedure for mapping Arabidopsis mutations using co-dominant ecotype-specific PCR-based markers. Plant J 4: 403-410
21. Koornneef M (1990) Linkage map of Arabidopsis thaliana. In: O'Brien SJ (ed) Genetic maps, plants. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY. pp 6.95-6.97
22. 3 populations. Arabidopsis Inf Serv 25: 35-40
23. Koornneef M, Hanhart CJ, Van Loenen Martinet EP, Van der Veen JH (1987) A marker line, that allows the detection of linkage on all Arabidopsis chromosomes. Arabidopsis Inf Serv 23:46-50
24. Leutwiler LS, Hough-Evans BR, Meyerowitz EM (1984) The DNA of Arabidopsis thaliana. Mol Gen Genet 194: 15-23
25. Leyser HMO, Lincoln CA, Timpte C, Lammer D, Turner J, Estelle M (1993) Arabidopsis auxin-resistance gene AXR1 encodes a protein related to ubiquitin-activating cnzyme E1. Nature 364: 161-164
26. Liu Y-G, Mitsukawa N, Oosumi T, Whittier RF (1995) Efficient isolation and mapping of Arabidopsis thaliana T-DNA insert junctions by thermal asymmetric interlaced PCR. Plant J 8:457-463
27. Meksem K, Leister D, Peleman J, Zabeau M, Salamini F, Gebhardt C (1995) A high-resolution map of the vicinity of the R1 locus on chromosome V of potato based on RFLP and AFLP markers. Mol Gen Genet 249:74-81
28. Nam H-G, Giraudat J, Boer B den, Moonan F, Loos WDB, Hauge BM, Goodman HM (1989) Restriction fragment length polymorphism linkage map of Arabidopsis thaliana. Plant Cell 1 : 699-705
29. Olszewski NE, Martin FB, Ausubel FM (1988) Specialized binary vector for plant transformation: expression of the Arabidopsis thaliana AHAS gene in Nicotiana tabacum. Nucleic Acids Res 16: 10765-10782
30. Putterill J, Robson F, Lee K, Coupland G (1993) Chromosome walking with YAC clones in Arabidopsis: isolation of 1700 kb of contiguous DNA on chromosome 5, including a 300 kb region containing the flowering-time gene CO. Mol Gen Genet 239: 145-147
31. Sambrook J, Fritsch EF, Maniatis T (1989) Molecular cloning: a laboratory manual, 2nd edn. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY
32. Schmidt R, Cnops G, Bancroft I. Dean C (1992) Construction of an overlapping YAC library of the Arabidopsis thaliana genome. Aust J Plant Physiol 19: 341-351
33. Schmidt R, Putterill J, West J, Cnops G, Robson F, Coupland G, Dean C (1994) Analysis of clones carrying repeated DNA sequences in two YAC libraries of Arabidopsis thaliana DNA. Plant J 5: 735-744
34. Schmidt R, West J, Love K, Lenehan Z, Lister C, Thompson H, Bouchez D, Dean C (1995) Physical map and organization of Arabidopsis thaliana chromosome 4. Science 270:480-483
35. Tanksley SD, Ganal MW, Martin GB (1995) Chromosome landing: a paradigm for map-based gene cloning in plants with large genomes. Trends Genet 11 :63-68
36. Thomas CM, Vos P, Zabeau M, Jones DA, Norcott KA, Chadwick BP, Jones DJG (1995) Identification of amplified restriction fragment polymorphism (AFLP) marker tightly linked to the tomato Cf-g gene for resistance to Cladosporium fulrum. Plant J 8: 785-794
37. Valvekens D, Van Montagu M, Van Lijsebettens M (1988) Agrobacterium tumefaciens-mediated transformation of Arabidopsis thaliana root explants by using kanamycin selection. Proc Natl Acad Sci USA 85: 5536-5540
38. Van Lijsebettens M, Wang X, Cnops G, Boerjan W, Desnos T, Höfte H, Van Montagu M (1996) Transgenic Arabidopsis tester lines with dominant marker genes. Mol Gen Genet 251:365-372
39. Vos P, Hogers R, Bleeker M, Reijans M, Lee T van de. Hornes M, Frijters A, Pot J, Peleman J, Kuiper M. Zabeau M (1995) AFLP: a new technique for DNA fingerprinting. Nucleic Acids Res 23:4407-4414
40. Ward ER, Jen GC (1990) Isolation of single-copy-sequence clones from a yeast artificial chromosome library of randomly-sheared Arabidopsis thaliana DNA. Plant Mol Biol 14: 561-568
41. Williams JGK, Hanafey MK, Rafalski JA, Tingey SV (1993) Genetic analysis using random amplified polymorphic DNA markers. Methods Enzymol 218:704-740
42. Zabeau M, Vos P (1993) Selective restriction fragment amplification: a general method for DNA fingerprinting. European Patent Application EP 534858A1
43. Zachgo EA, Wang ML, Dewdney J, Bouchez D, Camilleri C, Belmonte S, Huang L, Dolan M, Goodman HM (1996) A physical map of chromosome 2 of Arabidopsis thaliana. Genome Res 6: 19-25