-
1
-
-
0346740609
-
Generalized one-dimensional Ising model for polymer thermodynamics
-
Azbel MY (1974) Generalized one-dimensional Ising model for polymer thermodynamics. J Chem Phys 62: 3635-3641
-
(1974)
J Chem Phys
, vol.62
, pp. 3635-3641
-
-
Azbel, M.Y.1
-
4
-
-
0026417293
-
Premelting thermal fluctuational interbase hydrogen bond disrupted states of a B-DNA Guanine-Cytosine base pair. Significance for amino and imino proton exchange
-
Chen YZ, Zhuang W, Prohofsky EW (1991) Premelting thermal fluctuational interbase hydrogen bond disrupted states of a B-DNA Guanine-Cytosine base pair. Significance for amino and imino proton exchange. Biopolymers 31: 1273-1281
-
(1991)
Biopolymers
, vol.31
, pp. 1273-1281
-
-
Chen, Y.Z.1
Zhuang, W.2
Prohofsky, E.W.3
-
5
-
-
0026512120
-
The role of a minor groove spine of hydration in stabilizing Poly(dA)-Poly(dT) against fluctuational interbase H-bond disruption in the premelting temperature regime
-
Chen YZ, Prohofsky EW (1992a) The role of a minor groove spine of hydration in stabilizing Poly(dA)-Poly(dT) against fluctuational interbase H-bond disruption in the premelting temperature regime. Nucleic Acids Res 20: 415-419
-
(1992)
Nucleic Acids Res
, vol.20
, pp. 415-419
-
-
Chen, Y.Z.1
Prohofsky, E.W.2
-
6
-
-
0026909899
-
Salt-dependent stability of Poly(dG)-Poly(dC) with potential of mean force Coulomb interactions
-
Chen YZ, Prohofsky EW (1992b) Salt-dependent stability of Poly(dG)-Poly(dC) with potential of mean force Coulomb interactions. Biopolymers 32: 1123-1127
-
(1992)
Biopolymers
, vol.32
, pp. 1123-1127
-
-
Chen, Y.Z.1
Prohofsky, E.W.2
-
7
-
-
0027592074
-
Differences in melting behavior between homopolymers and copolymers of DNA: Role of nonbonded forces for GC and the role of hydration spine and melting transition for at
-
Chen YZ, Prohofsky EW (1993) Differences in melting behavior between homopolymers and copolymers of DNA: role of nonbonded forces for GC and the role of hydration spine and melting transition for AT. Biopolymers 33: 797-812
-
(1993)
Biopolymers
, vol.33
, pp. 797-812
-
-
Chen, Y.Z.1
Prohofsky, E.W.2
-
8
-
-
0010149123
-
Near-neighbor effects in cooperative modified self-consistent phonon approximation melting in DNA
-
Chen YZ, Prohofsky EW (1994a) Near-neighbor effects in cooperative modified self-consistent phonon approximation melting in DNA. Phys Rev E 49: 873-881
-
(1994)
Phys Rev E
, vol.49
, pp. 873-881
-
-
Chen, Y.Z.1
Prohofsky, E.W.2
-
9
-
-
0028084993
-
First- or second-order transition in the melting of repeating sequence DNA
-
Chen YZ, Prohofsky EW (1994b) First- or second-order transition in the melting of repeating sequence DNA. Biophys J 66: 202-206
-
(1994)
Biophys J
, vol.66
, pp. 202-206
-
-
Chen, Y.Z.1
Prohofsky, E.W.2
-
10
-
-
0028998993
-
Sequence and temperature dependence of the interbase hydrogen bond breathing modes in B-DNA polymers. Comparison with low frequency Raman peaks and their role in helix melting
-
Chen YZ, Prohofsky EW (1995) Sequence and temperature dependence of the interbase hydrogen bond breathing modes in B-DNA polymers. Comparison with low frequency Raman peaks and their role in helix melting. Biopolymers 35: 573-582
-
(1995)
Biopolymers
, vol.35
, pp. 573-582
-
-
Chen, Y.Z.1
Prohofsky, E.W.2
-
11
-
-
0029929659
-
Melting profile and temperature dependent binding constant of an anticancer drug daunomycin-DNA complex
-
Chen YZ, Prohofsky EW (1996) Melting profile and temperature dependent binding constant of an anticancer drug daunomycin-DNA complex. Eur Biophys J 24: 203-212
-
(1996)
Eur Biophys J
, vol.24
, pp. 203-212
-
-
Chen, Y.Z.1
Prohofsky, E.W.2
-
12
-
-
0026019603
-
Molecular dynamics simulation of the hydration shell of a B-DNA decamer reverts two main types of minor-groove hydration depending on groove width
-
Chuprina VP, Heinemann U, Nurislamov AA, Zielenkiewicz P, Dickerson RE (1991) Molecular dynamics simulation of the hydration shell of a B-DNA decamer reverts two main types of minor-groove hydration depending on groove width. Proc Natl Acad Sci USA 88: 593-597
-
(1991)
Proc Natl Acad Sci USA
, vol.88
, pp. 593-597
-
-
Chuprina, V.P.1
Heinemann, U.2
Nurislamov, A.A.3
Zielenkiewicz, P.4
Dickerson, R.E.5
-
13
-
-
0015153612
-
Statistical thermodynamics of nucleic acid melting transitions with coupled binding equilibria
-
Crothers DM (1971) Statistical thermodynamics of nucleic acid melting transitions with coupled binding equilibria. Biopolymers 10: 2147-2160
-
(1971)
Biopolymers
, vol.10
, pp. 2147-2160
-
-
Crothers, D.M.1
-
14
-
-
0000147964
-
Sequence dependence of low-frequency Raman-active modes in nucleic acids
-
Edwards G, Liu C (1991) Sequence dependence of low-frequency Raman-active modes in nucleic acids. Phys Rev A 44: 2709-2717
-
(1991)
Phys Rev A
, vol.44
, pp. 2709-2717
-
-
Edwards, G.1
Liu, C.2
-
15
-
-
36849097642
-
Effect of the excluded volume on phase transitions in biopolymers
-
Fisher ME (1966) Effect of the excluded volume on phase transitions in biopolymers. J Chem Phys 45: 1496-1473
-
(1966)
J Chem Phys
, vol.45
, pp. 1496-11473
-
-
Fisher, M.E.1
-
16
-
-
0017587485
-
Theory of DNA melting curves
-
Fixman M, Freire JJ (1977) Theory of DNA melting curves. Biopolymers 16: 2693-2704
-
(1977)
Biopolymers
, vol.16
, pp. 2693-2704
-
-
Fixman, M.1
Freire, J.J.2
-
17
-
-
0023256126
-
A single mode of DNA base-pair opening drives imino proton exchange
-
Gueron M, Kochoyan M, Leroy JL (1987) A single mode of DNA base-pair opening drives imino proton exchange. Nature 328: 89-92
-
(1987)
Nature
, vol.328
, pp. 89-92
-
-
Gueron, M.1
Kochoyan, M.2
Leroy, J.L.3
-
18
-
-
0000269878
-
Applications of imino proton exchange to nuclei acid kinetics and structures
-
Surma RH, Sarma MH (eds) Adenine Press, New York
-
Gueron M, Charretier E, Hagerhorst J, Kochoyan M, Leroy JL, Moraillon A (1990) Applications of imino proton exchange to nuclei acid kinetics and structures. In: Surma RH, Sarma MH (eds) Structure and Methods, vol 3: DNA and RNA. Adenine Press, New York, pp 113-137
-
(1990)
Structure and Methods, Vol 3: DNA and RNA
, vol.3
, pp. 113-137
-
-
Gueron, M.1
Charretier, E.2
Hagerhorst, J.3
Kochoyan, M.4
Leroy, J.L.5
Moraillon, A.6
-
19
-
-
0006645943
-
Helix-random coil transitions in DNA homopolymer pairs
-
Inman RB, Baldwin RL (1964) Helix-random coil transitions in DNA homopolymer pairs. J Mol Biol 8: 452-469
-
(1964)
J Mol Biol
, vol.8
, pp. 452-469
-
-
Inman, R.B.1
Baldwin, R.L.2
-
20
-
-
0017927846
-
Direct comparison of theoretical and experimental melting profiles for RF II Phi×174 DNA
-
Lyubchenko YL, Vologodskii AV, Frank-Kamenetskii MD (1978) Direct comparison of theoretical and experimental melting profiles for RF II Phi×174 DNA. Nature 271: 28-31
-
(1978)
Nature
, vol.271
, pp. 28-31
-
-
Lyubchenko, Y.L.1
Vologodskii, A.V.2
Frank-Kamenetskii, M.D.3
-
21
-
-
73649209034
-
Determination of the base composition of deoxyribonucleic acid from its thermal denaturation temperature
-
Marmur J, Doty P (1962) Determination of the base composition of deoxyribonucleic acid from its thermal denaturation temperature. J Mol Biol 5: 109-118
-
(1962)
J Mol Biol
, vol.5
, pp. 109-118
-
-
Marmur, J.1
Doty, P.2
-
22
-
-
0017390352
-
Formaldehyde as a probe of DNA structure. 4. Mechanism of the initial reaction of formaldehyde with DNA
-
McGhee JD, Hippel PH von (1977) Formaldehyde as a probe of DNA structure. 4. Mechanism of the initial reaction of formaldehyde with DNA. Biochemistry 16: 3276-3293
-
(1977)
Biochemistry
, vol.16
, pp. 3276-3293
-
-
McGhee, J.D.1
Von Hippel, P.H.2
-
23
-
-
0013952703
-
Occurrence of a phase transition in nucleic acid models
-
Poland D, Scheraga HA (1966) Occurrence of a phase transition in nucleic acid models. J Chem Phys 45: 1461-1469
-
(1966)
J Chem Phys
, vol.45
, pp. 1461-1469
-
-
Poland, D.1
Scheraga, H.A.2
-
24
-
-
0000725206
-
Investigation of far-infrared vibrational modes in polynucleotides
-
Powell JW, Edwards GS, Genzel L, Kremer F, Wittlin A, Kubasek W, Peticolas W (1987) Investigation of far-infrared vibrational modes in polynucleotides. Phys Rev A 35: 3929-3939
-
(1987)
Phys Rev A
, vol.35
, pp. 3929-3939
-
-
Powell, J.W.1
Edwards, G.S.2
Genzel, L.3
Kremer, F.4
Wittlin, A.5
Kubasek, W.6
Peticolas, W.7
-
26
-
-
0000812619
-
Low frequency Raman spectra of DNA
-
Urabe H, Tominaga Y (1981) Low frequency Raman spectra of DNA. J Phys Soc Japan 50: 3543-3544
-
(1981)
J Phys Soc Japan
, vol.50
, pp. 3543-3544
-
-
Urabe, H.1
Tominaga, Y.2
-
27
-
-
0000335475
-
Collective vibrational modes in molecular assembly of DNA and its application to biological systems. Low frequency Raman spectroscopy
-
Urabe H, Hayashi H, Tominaga Y, Nishimura Y, Kubota K, Tsuboi M (1985) Collective vibrational modes in molecular assembly of DNA and its application to biological systems. Low frequency Raman spectroscopy. J Chem Phys 82: 531-535
-
(1985)
J Chem Phys
, vol.82
, pp. 531-535
-
-
Urabe, H.1
Hayashi, H.2
Tominaga, Y.3
Nishimura, Y.4
Kubota, K.5
Tsuboi, M.6
-
28
-
-
0019241398
-
Fine structure in the thermal denaturation of DNA: High temperature-resolution spectrophotometric studies
-
Wada A, Yabuki S, Husimi Y (1980) Fine structure in the thermal denaturation of DNA: high temperature-resolution spectrophotometric studies. CRC Crit Rev Biochem 9: 87-144
-
(1980)
CRC Crit Rev Biochem
, vol.9
, pp. 87-144
-
-
Wada, A.1
Yabuki, S.2
Husimi, Y.3
-
29
-
-
0002459355
-
Thermal denaturation of DNA molecules: A comparison of theory with experiment
-
Wartel RW, Benighi AS (1985) Thermal denaturation of DNA molecules: A comparison of theory with experiment. Phys Reports 126: 67-107
-
(1985)
Phys Reports
, vol.126
, pp. 67-107
-
-
Wartel, R.W.1
Benighi, A.S.2
-
30
-
-
0000217002
-
Raman study of the low-frequency vibrations of polynucleotides
-
Weidlich T, Lindsay SM (1988) Raman study of the low-frequency vibrations of polynucleotides. J Phys Chem 92: 6479-6482
-
(1988)
J Phys Chem
, vol.92
, pp. 6479-6482
-
-
Weidlich, T.1
Lindsay, S.M.2
-
31
-
-
0025083328
-
A Raman study of low frequency intrahelical modes in A-, B-, and C-DNA
-
Weidlich T, Lindsay SM, Rui Q, Rupprecht A, Peticolas WL, Thomas GA (1990) A Raman study of low frequency intrahelical modes in A-, B-, and C-DNA. J Biomol Struct Dyn 8: 139-171
-
(1990)
J Biomol Struct Dyn
, vol.8
, pp. 139-171
-
-
Weidlich, T.1
Lindsay, S.M.2
Rui, Q.3
Rupprecht, A.4
Peticolas, W.L.5
Thomas, G.A.6
-
32
-
-
0014966634
-
Physicochemical studies on polydeoxyribonucleotides containing defined repeating nucleotide sequences
-
Wells RD, Larson JE, Grant RC, Shortle BE, Cantor CR (1970) Physicochemical studies on polydeoxyribonucleotides containing defined repeating nucleotide sequences. J Mol Biol 54: 465-497
-
(1970)
J Mol Biol
, vol.54
, pp. 465-497
-
-
Wells, R.D.1
Larson, J.E.2
Grant, R.C.3
Shortle, B.E.4
Cantor, C.R.5
-
33
-
-
4244082863
-
Self-consistent phonon formulation of anharmonic lattice dynamics
-
Werthamer NR (1970) Self-consistent phonon formulation of anharmonic lattice dynamics. Phys Rev B 1: 572-581
-
(1970)
Phys Rev B
, vol.1
, pp. 572-581
-
-
Werthamer, N.R.1
-
34
-
-
0026439271
-
Description of base motion and role of excitations in the melting of Poly(dG)-Poly(dC)
-
Zhuang W, Chen YZ, Prohofsky EW (1992) Description of base motion and role of excitations in the melting of Poly(dG)-Poly(dC). J Biomol Struct Dyn 10: 403-414
-
(1992)
J Biomol Struct Dyn
, vol.10
, pp. 403-414
-
-
Zhuang, W.1
Chen, Y.Z.2
Prohofsky, E.W.3
|