Evolution of fitness in experimental populations of vesicular stomatitis virus

Genetics

Volumn 142, Issue 3, 1996, Pages 673-679

  Elena, Santiago F ^a   González Candelas, Fernando ^a   Novella, Isabel S ^b   Duarte, Elizabeth A ^b,c   Clarke, David K ^b,d   Domingo, Esteban ^e   Holland, John J ^b   Moya, Andrés ^a  

^a UNIVERSITY OF VALENCIA   (Spain)

^b UNIVERSITY OF CALIFORNIA   (United States)

^c UNIVERSITY OF LAUSANNE   (Switzerland)

^d MEDIMMUNE   (United States)

^e CENTRO DE BIOLOGÍA MOLECULAR SEVERO OCHOA   (Spain)

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; COMPETITION; CONTROLLED STUDY; EVOLUTION; FITNESS; GENE MUTATION; GENETIC DRIFT; GENETIC HETEROGENEITY; NONHUMAN; POPULATION DYNAMICS; PRIORITY JOURNAL; QUANTITATIVE GENETICS; VESICULAR STOMATITIS VIRUS; VIRUS REPLICATION;

ADAPTATION, PHYSIOLOGICAL; ANIMALS; CELL LINE; CRICETINAE; EVOLUTION; HELA CELLS; HUMANS; MATHEMATICAL COMPUTING; MODELS, GENETIC; VESICULAR STOMATITIS-INDIANA VIRUS;

EID: 0029896917     PISSN: 00166731     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Article

References (45)

1. BUONAUGURIO, D. A., S. NAKADA, J. O. PARVIN, M. KRYSTAL, P. PALESE et al., 1986 Evolution of human influenza A virus over 50 years: rapid, uniform rate of change in NS gene. Science 232: 980-982.
2. CHAO, L., 1990 Fitness of RNA virus decreased by Muller's ratchet. Nature 348: 454-455.
3. CHARLESWORTH, D., M. T. MORGAN and B. CHARLESWORTH, 1993 Mutation accumulation in finite inbreeding and outbreeding populations. Genet. Res. 61: 39-56.
4. CLARKE, D. K., E. A. DUARTE, S. F. ELENA, A. MOYA, E. DOMINGO et al , 1993 Genetic bottlenecks and population passages cause profound fitness differences in RNA viruses. J. Virol. 67: 222-228
5. CLARKE, D. K., E. A. DUARTE, S. F. ELENA, A. MOYA, E. DOMINGO et al., 1994 The red queen reigns in the kingdom of RNA viruses. Proc. Natl. Acad. Sci. USA 91: 4821-4824.
6. COFFIN, J. H., 1992 Genetic diversity and evolution of retrovirus. Curr. Topics Microb. Immunol. 176: 143-164.
7. DELASSUS, S., R. CHEYNIER and S. WAIN-HOBSON, 1991 Evolution of human immunodeficiency virus type 1 nef and long repeat terminal sequences over 4 years in vivo and in vitro. J. Virol. 65: 225-231.
8. DOMINGO, E., and J. J. HOLLAND, 1994 Mutation rates and rapid evolution of RNA viruses, pp. 161-184 in The Evolutionary Biology of Viruses, edited by S. S. MORSE. Raven Press, New York.
9. DOMINGO, E., D. SABO, T. TANIGUCHI and C WEISSMANN, 1978 Nucleotide sequence heterogeneity of an RNA phage population. Cell 13: 735-744.
10. DOMINGO, E., E. MARTÍNEZ-SALAS, F. SOBRINO, J. C. DE LA TORRE, A. PORTELA et al., 1985 The quasispecies (extremely heterogeneous) nature of viral RNA genome populations: biological relevance - a review Gene 40: 1-8.
11. DRAKE, J. W , 1993 Rates of spontaneous mutation among RNA viruses. Proc. Natl. Acad. Sci. USA 90: 4171-4175.
12. DUARTE, E. A., D. K. CLARKE, A. MOYA, E. DOMINGO and J. J. HOLLAND, 1992 Rapid fitness losses in mammalian RNA virus clones due to Muller's ratchet Proc. Natl. Acad. Sci. USA 89: 6015-6019.
13. DUARTE, E. A , D. K. CLARKE, S. F. ELENA, A. MOYA, E. DOMINGO et al., 1993 Many-trillionfold amplification of single RNA virus particles fails to overcome the Muller's ratchet effect. J. Virol. 67: 3620-3623.
14. DUARTE, E., I. S. NOVELLA, S. LEDESMA, D. K. CLARKE, A. MOYA et al., 1994 Subclonal components of consensus fitness in an RNA virus clone. J. Virol. 68: 1325-1330.
15. EIGEN, M., and C. BIEBRICHER, 1988 Sequence space and quasispecies distribution, pp. 211-245 in RNA Genetics, edited by E. DOMINGO, J. J. HOLLAND and P. AHLQUIST. CRC Press, Boca Raton, FL.
16. EIGEN, M , and P. SCHUSTER, 1979 The Hypercycle. A Principle of Natural Self-organization, Springer-Verlag, Berlin.
17. FELSENSTEIN, J., 1974 The evolutionary advantage of recombination. Genetics 78: 737-756.
18. FITCH, W. M., J. M. E. LEITER, X.-Q. LI and P. PALESE, 1991 Positive Darwinian evolution in human influenza A viruses. Proc. Natl. Acad. Sci. USA 88: 4270-4274.
19. GILLESPIE, J. H , 1993 Episodic evolution of RNA viruses. Proc. Natl. Acad. Sci. USA 90: 10411-10412.
20. GOJOBORI, E., E. N. MARUYAMA and M. KIMURA, 1990 Molecular clock of viral evolution and the neutral theory. Proc. Natl. Acad. Sci. USA 87: 10015-10018.
21. HAIGH, J., 1978 The accumulation of deleterious genes in a population: Muller's ratchet. Theor. Pop. Biol. 14: 251-267.
22. HARTL, D. L., and A. G. CLARK, 1988 Principles of Population Genetics, Ed. 2. Sinauer Associates, Sunderland, MA.
23. HOLLAND, J. J., K. SPINDLER, F. HORODYSKI, E. GRABAU, S. NICHOL et al., 1982 Rapid evolution of RNA genomes. Science 215: 1577-1585.
24. HOLLAND, J. J., J. C. DE LA TORRE, D. A. STEINHAUER, D. CLARKE, E DUARTE et al., 1989 Virus mutation frequencies can be greatly underestimated by monoclonal antibody neutralization of virions. J. Virol. 63: 5030-5036.
25. HOLLAND, J. J., J. C. DE LA TORRE, D K. CLARKE and E. A. DUARTE, 1991 Quantitation of relative fitness and great adaptability of clonal populations of RNA viruses J. Virol. 65: 2960-2967.
26. HOLLAND, J. J., J. C. DE LA TORRE and D. A. STEINHAUER, 1992 RNA virus populations as quasispecies. Curr. Top. Microbiol. Immunol. 176: 1-20.
27. MARICH, J. E., A. T. POTSLER, S. M. RICE, K. A. MCGRAW and T. W DUBENSKY, 1992 The phylogenetic relationship and complete nucleotide sequence of human papilloma virus type 35. Virology 186: 770-776.
28. MARTÍNEZ, M. A., J. DOPAZO, J. HERNÁNDEZ, M. G. MATEU, F. SOBRINO et al., 1992 Evolution of the capsid protein genes of foot-and-mouth disease virus: antigenic variation without accumulation of aminoacid substitutions over six decades. J. Virol. 66: 3557-3565.
29. MAYNARD SMITH, J., 1989 Evolutionary Genetics. Oxford University Press, New York.
30. MAYNARD SMITH, J., and S. NEE, 1991 Clicking into decline? Nature 348: 391-392.
31. MELZER, A. L., and J. H. KOESIAG, 1991 Mutations do not accumulate in asexual isolates capable of growth and extinction - Muller's ratchet reexamined. Evolution 45: 649-655.
32. MOYA, A., E. RODRÍGUEZ-CEREZO and F. GARCÍA-ARENAL, 1993 Genetic structure of natural populations of the plant RNA virus tobacco mild green mosaic virus. Mol. Biol. Evol. 10: 449-456.
33. MULLER, H. J., 1964 The relation of recombination to mutational advance. Mutant. Res. 1: 2-9.
34. NICHOL, S. T., J. E. ROWE and W. M. FITCH, 1993 Punctuated equilibrium and positive Darwinian evolution in vesicular stomatitis virus. Proc. Natl. Acad. Sci. USA 90: 10424-10428.
35. SCOTT, T. W., S. C. WEAVER and V. L. MALLAMPALLI, 1994 Evolution of mosquito-borne viruses, pp. 293-324 in The Evolutionary Biology of Viruses, edited by S. S. MORSE. Raven Press, New York
36. SOKAL, R. R., and F. J. ROHLF, 1981 Biometry, Ed. 2, W. H. Freeman and Company, New York.
37. STEINHAUER, D. S., and J. J. HOLLAND, 1986 Direct method for quantification of extreme polymerase error frequencies at selected single base sites in viral RNA J. Virol 57: 219-228.
38. STEINHAUER, D. S., and J. J. HOLLAND, 1987 Rapid evolution of RNA viruses. Ann Rev. Microbiol. 41: 409-433.
39. STEINHAUER, D. S., J. C DE LA TORRE and J. J. HOLLAND, 1989 High nucleotide substitution error frequencies in clonal pools of vesicular stomatitis virus. J. Virol. 63: 2063-2071.
40. STEPHAN, W., L. CHAO and J. G. SMALE, 1993 The advance of Muller's ratchet in a haploid asexual population: approximate solutions based on diffusion theory. Genet. Res. 61: 225-231.
41. VANDEPOL, S. B., L. LEFRANCOIS and J. HOLLAND, 1986 Sequences of the major antibody binding epitopes of the Indiana serotype of vesicular stomatitis virus. Virology 148: 312-325.
42. WAIN-HOBSON, S., 1992 Human immunodeficiency virus type 1 quasispecies in vivo and ex vivo. Curr. Top. Microbiol. Immunol. 176: 181-194.
43. WAIN-HOBSON, S., 1994 Is antigenic variation of HIV important for AIDS and what migh be expected in the future?, pp. 185-209 in The Evolutionary Biology of Viruses, edited by S. S. MORSE. Raven Press, New York.
44. WHITE, B. T., and D. J. MCGEOCH, 1987 Isolation and characterization of conditional lethal amber nonsense mutants of vesicular stomatitis virus. J. Gen. Virol. 68: 3033-3044.
45. WRIGHT, S., 1938 Size of populations and breeding structure in relation to evolution. Science 36: 1059-1066.