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0028559927
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Zdanov, A.; Wu, S.; DiMaio, J.; Konishi, Y.; Li, Y.; Wu, X.; Edwards,B. F. P.; Martin, P. D.; Cygler, M. Proteins 1993, 17, 252. Tsuda, Y.; Cygler, M.; Gibbs, B. F.; Peduczak, A.; Fethiere, J.; Yue, S. Y.; Konishi, Y. Biochemistry 1994, 33, 14443-14451. Qiu, X.; Padmanabhan, P.; Carperos, V. E.; Tulinsky, A.; Kline, T.; Maraganore, J. M.; Fenton, J. W. Biochemistry 1992, 31, 11689.
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Yue, S.Y.6
Konishi, Y.7
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6
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Qiu, X.1
Padmanabhan, P.2
Carperos, V.E.3
Tulinsky, A.4
Kline, T.5
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Fenton, J.W.7
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9
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15844401476
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note
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50. However, the clear and continuous electron density present in the initial difference Fourier maps indicated the presence of a NAZA thrombin complex.
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10
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0018750813
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Kettner, C. K.; Shaw, E. Thromb. Res. 1979, 14, 969. Bajusz, S.; Barabas, E.; Szell, E.; Bagdy, D. Int. J. Peptide Protein Res. 1978, 12, 217.
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Bajusz, S.1
Barabas, E.2
Szell, E.3
Bagdy, D.4
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0024431034
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Bode, W.; Mayr, I.; Baumann, U.; Huber, R.; Stone, S.; Hofsteenge, J. EMBO J. 1989, 8, 3467.
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13
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15844410806
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8
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8
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15
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15844390143
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note
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The peptide amide of proline is within the side chain ring. Thus, for retro-binders the proline carbonyl linker is not being replaced by a linker amide (see Figure 1).
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17
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0028930160
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Weber, P. C.; Lee, S.-L.; Lewandowski, F. A.; Schadt, M. C.; Chang, C.-H.; Kettner, C. A. Biochemistry 1995, 34, 3750.
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Weber, P.C.1
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Chang, C.-H.5
Kettner, C.A.6
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18
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0026465007
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Martin, P.6
Edwards, B.F.P.7
Bode, W.8
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20
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0028930131
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1′ residue is oriented in 82, giving rise to a binding mode more similar to that of NAPAP or 4-TAPAP. Tabernero, L.; Chang, C. Y.; Ohringer, S. L.; Lau, W. F.; Iwanowica, E. J.; Han, W. C.; Wang, T. C.; Seiler, S. M.; Roberts, D. G. M.; Sack, J. S. J. Mol. Biol. 1995, 246, 14.
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Chang, C.Y.2
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Han, W.C.6
Wang, T.C.7
Seiler, S.M.8
Roberts, D.G.M.9
Sack, J.S.10
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21
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0025329390
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Ravichendran, K.G.2
Tulinsky, A.3
Bode, W.4
Huber, R.5
Roitsch, C.6
Fenton II, J.W.7
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22
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0026091628
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Skrzypczak-Jankun, E.; Carperos, V. E.; Ravichandran, K. G.; Tulinsky, A.; Westbrook, M.; Maraganore, J. M. J. Mol. Biol. 1991, 221, 1379.
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Skrzypczak-Jankun, E.1
Carperos, V.E.2
Ravichandran, K.G.3
Tulinsky, A.4
Westbrook, M.5
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23
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0002908272
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Roussel, A.1
Cambillau, C.2
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25
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15844363740
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note
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We thank Frank Lewandowski for growing the thrombin crystals and Drs. Richard Alexander and Robert Galemmo for helpful discussions. V.L.N. thanks the DuPont Merck post-doctoral program for financial support.
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