Two regions within the DNA binding domain of nuclear factor I interact with DNA and stimulate adenovirus DNA replication independently

Molecular and Cellular Biology

Volumn 16, Issue 8, 1996, Pages 4073-4080

  Dekker, Job ^a   Van Oosterhout, Joost A W M ^a   Van Der Vliet, Peter C ^a,b  

^a UTRECHT UNIVERSITY   (Netherlands)

^b Lab for Physiological Chemistry   (Netherlands)

Author keywords

[No Author keywords available]

Indexed keywords

DNA POLYMERASE; NUCLEAR FACTOR I; PROTEIN PRECURSOR; VIRUS DNA;

ADENOVIRUS; ALPHA HELIX; AMINO TERMINAL SEQUENCE; ARTICLE; CARBOXY TERMINAL SEQUENCE; DELETION MUTANT; DNA REPLICATION; NONHUMAN; PRIORITY JOURNAL; PROTEIN DNA BINDING; PROTEIN DOMAIN; PROTEIN PROTEIN INTERACTION;

EID: 0029894084     PISSN: 02707306     EISSN: None     Source Type: Journal    
DOI: 10.1128/MCB.16.8.4073     Document Type: Article

References (55)

1. Abate, C., L. Patel, F. J. Rauscher, and T. Curran. 1990. Redox regulation of fos and jun DNA-binding activity in vitro. Science 249:1157-1161.
2. Armentero, M., M. Horwitz, and N. Mermod. 1994. Targeting of DNA polymerase to the adenovirus origin of DNA replication by interaction with nuclear factor I. Proc. Natl. Acad. Sci. USA 91:11537-11541.
3. Bandyopadhyay, S., and R. M. Gronostajski. 1994. Identification of a conserved oxidation-sensitive cysteine residue in the NFI family of DNA binding proteins. J. Biol. Chem. 269:29949-29955.
4. Bannister, A. J., A. Cook, and T. Konzarides. 1991. In vitro DNA binding activity of Fos/Jun and BZLF1 but not C/EBP is affected by redox changes. Oncogene 6:1243-1250.
5. Bosher, J., E. C. Robinson, and R. T. Hay. 1990. Interactions between the adenovirus type 2 DNA polymerase and the DNA binding domain of nuclear factor I. New Biol. 2:1083-1090.
6. Chakraborty, T., and G. C. Das. 1991. Proteins of the nuclear factor I family act as an activator of the late promoter in human polyomavirus BK in vitro. J. Gen. Virol. 72:1935-1942.
7. Chen, M., N. Mermod, and M. S. Horwitz. 1990. Protein-protein interactions between adenovirus DNA polymerase and nuclear factor I mediate formation of the DNA replication preinitiation complex. J. Biol. Chem. 265:18634-18642.
8. Cleat, P. H., and R. T. Hay. 1989. Co-operative interactions between NFI and the adenovirus DNA binding protein at the origin of replication. EMBO J. 8:1841-1848.
9. Coenjaerts, F. E. J., E. de Vries, G. J. M. Pruijn, W. van Driel, S. M. Bloemers, N. M. T. van der Lugt, and P. C. van der Vliet. 1991. Enhancement of DNA replication by transcription factors NFI and NFIII/Oct-1 depends critically on the positions of their binding sites in the origin of replication. Biochim. Biophys. Acta 1090:61-69.
10. Coenjaerts, F. E. J., and P. C. van der Vliet. 1994. Early dissociation of nuclear factor 1 from the origin during initiation of adenovirus DNA replication studied by origin immobilization. Nucleic Acids Res. 22:5235-5240.
11. Coenjaerts, F. E. J., and P. C. van der Vliet. 1995. Adenovirus DNA replication in a reconstituted system. Methods Enzymol. 262:548-560.
12. Coenjaerts, F. E. J., J. A. W. M. van Oosterhout, and P. C. van der Vliet. 1994. The Oct-1 POU domain stimulates adenovirus DNA replication by a direct interaction between the viral precursor terminal protein-DNA polymerase complex and the POU homeodomain. EMBO J. 13:5401-5409.
13. Courtois, S. J., D. A. Lafontaine, F. P. Lemaigre, S. M. Durviaux, and G. G. Rousseau. 1990. Nuclear factor I and activator protein-2 bind in a mutually exclusive way to overlapping promoter sequences and trans-activate the human growth hormone gene. Nucleic Acids Res. 18:57-64.
14. 13a. DePamphilis, M. L. 1993. Eukaryotic DNA replication: anatomy at an origin. Annu. Rev. Biochem. 62:29-63.
15. de Vries, E., S. M. Bloemers, and P. C. van der Vliet. 1987. Incorporation of 5-bromodeoxycytidine in the adenovirus 2 replication origin interferes with nuclear factor I binding. Nucleic Acids Res. 15:7223-7234.
16. de Vries, E., W. van Driel, S. J. L. van den Heuvel, and P. C. van der Vliet. 1987. Contact point analysis of the HeLa nuclear factor I recognition site reveals symmetrical binding at one side of the DNA helix. EMBO J. 6:161-168.
17. Flashner, Y., and J. D. Gralla. 1988. DNA dynamic flexibility and protein recognition: differential stimulation by bacterial histone-like protein HU. Cell 54:713-721.
18. Gounari, F., R. De Francesco, J. Schmitt, P. C. van der Vliet, R. Cortese, and H. Stunnenberg. 1990. Amino-terminal domain of NFI binds DNA as a dimer and activates adenovirus DNA replication. EMBO J. 9:559-566.
19. Gronostajski, R. M., S. Adhya, K. Nagata, R. A. Guggenheimer, and J. Hurwitz. 1985. Site-specific DNA binding of nuclear factor I: analyses of cellular binding sites. Mol. Cell. Biol. 5:964-971.
20. Guehmann, S., G. Vorbrueggen, F. Kalkbrenner, and K. Moelling. 1992. Reduction of a conserved Cys is essential for Myb DNA-binding. Nucleic Acids Res. 20:2279-2286.
21. Hainaut, P., and J. Milner. 1993. Redox regulation of p53 conformation and sequence-specific DNA binding in vitro. Cancer Res. 53:4469-4473.
22. Hay, R. T., A. Freeman, I. Leith, A. Monaghan, and A. Webster. 1995. Molecular interactions during adenovirus DNA replication, p. 31-48. In W. Doerfler and P. Böhm (ed.), The molecular repertoire of adenoviruses II. Springer-Verlag, Berlin.
23. Hegde, R. S., S. R. Grossman, L. A. Laimins, and P. B. Sigler. 1992. Crystal structure at 1.7 A of the bovine papillomavirus-1 E2 DNA-binding domain bound to its target DNA. Nature (London) 359:505-512.
24. Hupp, T. R., D. W. Meek, C. A. Midgley, and D. P. Lane. 1993. Activation of the cryptic DNA binding function of mutant forms of p53. Nucleic Acids Res. 21:3167-3174.
25. Kenny, M. K., and J. Hurwitz. 1988. Initiation of adenovirus DNA replication. II. Structural requirements using synthetic oligonucleotide adenovirus templates. J. Biol. Chem. 263:9809-9817.
26. Klemm, J. D., M. A. Rould, R. Aurora, W. Herr, and C. O. Pabo. 1994. Crystal structure of the Oct-1 POU domain bound to an octamer site: DNA recognition with tethered DNA-binding modules. Cell 77.-21-32.
27. Kretzschmar, M., K. Kaiser, F. Lottspeich, and M. Meisterernst. 1994. A novel mediator of class II gene transcription with homology to viral immediate-early transcriptional regulators. Cell 78:525-534.
28. Kruse, U., and A. E. Sippel. 1994. Transcription factor nuclear factor I proteins form stable homo- and heterodimers. FEBS Lett. 348:46-50.
29. Leegwater, P. A. J., W. van Driel, and P. C. van der Vliet. 1985. Recognition site of nuclear factor I, a sequence-specific DNA-binding protein from HeLa cells that stimulates adenovirus DNA replication. EMBO J. 4:1515-1521.
30. Matthews, J. R., N. Wakasugi, J. L. Virelizier, J. Jodoi, and R. T. Hay. 1992. Thioredoxin regulates the DNA binding activity of NF-kappa B by reduction of a disulphide bond involving cysteine 62. Nucleic Acids Res. 20:3821-3830.
31. McBride, A. A., R. D. Klausner, and P. M. Howley. 1992. Conserved cysteine residues in the DNA-binding domain of the bovine papillomavirus type 1 E2 protein confers redox regulation of the DNA-binding activity in vitro. Proc. Natl. Acad. Sci. USA 89:7531-7535.
32. Meisterernst, M., L. Rogge, R. Foeckler, M. Karaghiosoff, and E. L. Winnacker. 1989. Structural and functional organization of a porcine gene coding for nuclear factor I. Biochemistry 28:8191-8200.
33. Mermod, N., E. A. O'Neill, T. J. Kelly, and R. Tjian. 1989. The proline-rich transcriptional activator of CTF/NF-I is distinct from the replication and DNA binding domain. Cell 58:741-753.
34. Mink, S., E. Hartig, P. Jennewein, W. Doppler, and A. C. B. Cato. 1992. A mammary cell-specific enhancer in mouse mammary tumor virus DNA is composed of multiple regulatory elements including binding sites for CTF/ NFI and a novel transcription factor, mammary cell-activating factor. Mol. Cell. Biol. 12:4906-4918.
35. Mul, Y. M., and P. C. van der Vliet. 1992. Nuclear factor 1 enhances adenovirus DNA replication by increasing the stability of a preinitiation complex. EMBO J. 11:751-760.
36. Mul, Y. M., C. P. Verrijzer, and P. C. van der Vliet. 1990. Transcription factors NFI and NFIII/Oct-1 function independently, employing different mechanisms to enhance adenovirus DNA replication. J. Virol. 64:5510-5518.
37. Novak, A., N. Goyal, and R. M. Gronostajski. 1992. Four conserved cysteine residues are required for the DNA binding activity of nuclear factor 1. J. Biol. Chem. 267:12986-12990.
38. Novak, A. N., N. Goyal, and R. M. Gronostajski. 1994. Additions and corrections. J. Biol. Chem. 268:26032.
39. Onate, A. S., P. Prendergast, J. P. Wagner, M. Nissen, R. Reeves, D. E. Pettijohn, and D. P. Edwards. 1994. The DNA-bending protein HMG-1 enhances progesterone receptor binding to its target DNA sequences. Mol. Cell. Biol. 14:3376-3391.
40. Paonessa, G., F. Gounari, R. Frank, and R. Cortese. 1988. Purification of a NFI-like DNA binding protein from rat liver and cloning of the corresponding cDNA. EMBO J. 7:3115-3123.
41. Pettijohn, D. E. 1988. Histone-like proteins and bacterial chromosome structure. J. Biol. Chem. 263:12793-12796.
42. Rigoni, P., L. Xu, K. Harshman, W. Schaffner, and D. N. Arnosti. 1993. Conserved cysteine residues of Oct-2 POU domain confer sensitivity to oxidation but are dispensable for sequence-specific DNA binding. Biochem. Biophys. Acta 1173:141-146.
43. Rossi, P., G. Karsenty, A. B. Roberts, N. S. Roche, M. B. Sporn, and B. de Crombrugghe. 1988. A nuclear factor I binding site mediates the transcriptional activation of a type I collagen promotor by transforming growth factor-β. Cell 52:405-414.
44. Stambolic, V., and R. M. Gronostajski. 1993. Nuclear factor I induced DNA bending. J. Cell. Biochem. 17A:93.
45. Studier, F. W., A. H. Rosenberg, J. J. Dunn, and J. W. Dubendorff. 1990. Use of T7 RNA polymerase to direct expression of cloned genes. Methods Enzymol. 185:60-89.
46. Stuiver, M. H., and P. C. van der Vliet. 1990. Adenovirus DNA-binding protein forms a multimeric protein complex with double-stranded DNA and enhances binding of nuclear factor I. J. Virol. 64:379-386.
47. van der Vliet, P. C. 1991. The role of cellular transcription factors in the enhancement of adenovirus DNA replication. Semin. Virol. 2:271-280.
48. van der Vliet, P. C. 1995. Adenovirus DNA replication, p. 1-30. In W. Doerfler and P. Böhm (ed.), The molecular repertoire of adenoviruses II. Springer-Verlag, Berlin.
49. Verrijzer, C. P., A. J. Kal, and P. C. Van der Vliet. 1990. The DNA binding domain (POU domain) of transcription factor Oct-1 suffices for stimulation of DNA replication. EMBO J. 9:1883-1888.
50. Wang, Y., M. Reed, P. Wang, J. E. Stenger, G. Mayr, M. E. Anderson, J. F. Schwedes, and P. Tegtmeyer. 1993. p53 domains: identification and characterization of two autonomous DNA-binding regions. Genes Dev. 7:2575-2586.
51. Wides, R. J., M. D. Challberg, D. R. Rawlins, and T. J. Kelly. 1987. Adenovirus origin of DNA replication: sequence requirements for replication. Mol. Cell. Biol. 7:864-874.
52. Yang, J. T., C. S. Wu, and H. M. Martinez. 1986. Calculation of protein conformation from circular dichroism. Methods Enzymol. 130:208-269.
53. Zijderveld, D. C., F. d'Adda di Fagagna, M. Giacca, H. T. Timmers, and P. C. van der Vliet. 1994. Stimulation of the adenovirus major late promoter in vitro by transcription factor USF is enhanced by the adenovirus DNA binding protein. J. Virol. 68:8288-8295.
54. Zorbas, H., L. Rogge, M. Meisterernst, and E. Winnacker. 1989. Hydroxyl radical footprints reveal novel structural features around the NFI binding site in adenovirus DNA. Nucleic Acids Res. 17:7735-7748.
55. Zwilling, S., H. Konig, and T. Wirth. 1995. High mobility group protein 2 functionally interacts with the POU domains of octamer transcription factors. EMBO J. 14:1198-1208.