NMR study of the conformation of the 2-aminopurine:cytosine mismatch in DNA

Biochemistry

Volumn 35, Issue 13, 1996, Pages 4026-4033

  Fagan, Patricia A ^a   Fàbrega, Carme ^b   Eritja, Ramon ^b   Goodman, Myron F ^c   Wemmer, David E ^a  

^a UNIVERSITY OF CALIFORNIA   (United States)

^b EUROPEAN MOLECULAR BIOLOGY LABORATORY   (Germany)

^c UNIVERSITY OF SOUTHERN CALIFORNIA   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

2 AMINOPURINE; CYTOSINE;

ARTICLE; BASE MISPAIRING; DNA SEQUENCE; NUCLEAR MAGNETIC RESONANCE SPECTROSCOPY; NUCLEAR OVERHAUSER EFFECT; PH; PRIORITY JOURNAL;

2-AMINOPURINE; BASE COMPOSITION; BASE SEQUENCE; CYTOSINE; DNA; DNA REPAIR; HYDROGEN BONDING; HYDROGEN-ION CONCENTRATION; MAGNETIC RESONANCE SPECTROSCOPY; MOLECULAR SEQUENCE DATA; MOLECULAR STRUCTURE; OLIGODEOXYRIBONUCLEOTIDES;

EID: 0029886521     PISSN: 00062960     EISSN: None     Source Type: Journal    
DOI: 10.1021/bi952657g     Document Type: Article

References (48)

1. Acedo, M., Fàbrega, C., Aviño, A., Goodman, M., Fagan, P., Wemmer, D., & Eritja, R. (1994) Nucleic Acids Res. 22, 2982-2989.
2. Bessman, M. J., Muzyczka, N., Goodman, M. F., & Schnaar, R. L. (1974) J. Mol. Biol. 88, 409-421.
3. Bloom, L. B., Otto, M. R., Beechem, J. M., & Goodman, M. F. (1993) Biochemistry 32, 11247-11258.
4. Bloom, L. B., Otto, M. R., Eritja, R., Reha-Krantz, L. J., Goodman, M. F., & Beechem, J. M. (1994) Biochemistry 33, 7576-7586.
5. Brown, T., Kennard, O., Kneale, G., & Rabinovich, D. (1985) Nature 315, 604-606.
6. Doktycz, M. J., Morris, M. D., Dormady, S. J., Beattie, K. L., & Jacobson, K. B. (1995) J. Biol. Chem. 270, 8439-8445.
7. Drake, J. W., Allen, E. F., Forsberg, S. A., Preparata, R.-M., & Greening, E. O. (1969) Nature 221, 1128-1132.
8. Echols, H., & Goodman, M. F. (1991) Annu. Rev. Biochem. 60, 477-511.
9. Fasman, G. D., Ed. (1975) in Handbook of Biochemistry and Molecular Biology, Vol. I, CRC Press, Cleveland, OH.
10. Fazakerley, G. V., Sowers, L. C., Eritja, R., Kaplan, B. E., & Goodman, M. F. (1987) Biochemistry 26, 5641-5646.
11. Freese, E. (1959) J. Mol Biol. 1, 87-105.
12. Frey, M. W., Sowers, L. C., Millar, D. P., & Benkovic, S. J. (1995) Biochemistry 34, 9185-9192.
13. Goodman, M. F., & Ratliff, R. L. (1983) J. Biol. Chem. 258. 12842-12846.
14. Guest, C. R., Hochstrasser, R. A., Sowers, L. C., & Millar, D. P. (1991) Biochemistry 30, 3271-3279.
15. Hare, D. R., Wemmer, D. E., Chou, S.-H., & Drobny, G. (1983) J. Mol. Biol. 171, 319-336.
16. Hare, D., Shapiro, L., & Patel, D. J. (1986) Biochemistry 25, 7445-7456.
17. James, T. L., James, J. L., & Lapidot, A. (1981) J. Am. Chem. Soc. 103, 6748-6750.
18. Janion, C., & Shugar, D. (1973) Acta Biochim. Polon. 20, 271-284.
19. Joyce, C. M., Chen Sun, X., & Grindley, N. G. (1992) J. Biol. Chem. 267, 24485-24500.
20. Kalnick, M. W., Li, B. F. L., Swann, P. F., & Patel, D. J. (1989) Biochemistry 28, 6182-6192.
21. Ke, S.-H., & Wartell, R. M. (1993) Nucleic Acids Res. 21, 5137-5143.
22. Kennard, O. (1987) Nucleic Acids Mol. Biol. 1, 25-52.
23. Kime, M. J., & Moore, P. B. (1983) Biochemistry 22, 2615-2622.
24. Kneale, G., Brown, T., Kennard, O., & Rabinovich, D. (1985) J. Mol. Biol. 186, 805-814.
25. Kornberg, A. (1980) DNA Replication, Freeman, San Francisco.
26. Live, D. H., Dane, D. G., Agosta, W. C., & Cowburn, D. (1984) J. Am. Chem. Soc. 106, 1939-1941.
27. Marion, D., & Wüthrich, K. (1983) Biochem. Biophys. Res. Commun. 113, 967-974.
28. Mendelman, L. V., Boosalis, M. S., Petruska, J., & Goodman, M. F. (1989) J. Biol. Chem. 264, 14415-14423.
29. Mhaskar, D. N., & Goodman, M. F. (1984) J. Biol. Chem. 259, 11713-11717.
30. Mitra, R., Pettitt, B. M., Rame, G. L., & Blake, R. D. (1993) Nucleic Acids Res. 21, 6028-6037.
31. Modrich, P. (1987) Annu. Rev. Biochem. 56, 435-466.
32. Patel, D. J., Kozlowski, S. A., Marky, L. A., Rice, J. A., Broka, C., Dallas, J., Itakura, K., & Breslauer, K. J. (1982) Biochemistry 21, 437-444.
33. Petruska, J., & Goodman, M. F. (1985) J. Biol. Chem. 260, 7533-7539.
34. Pless, R. C., & Bessman, M. J. (1983) Biochemistry 22, 4905-4915.
35. Ronen, A. (1979) Mutat. Res. 75, 1-47.
36. Saenger, W. (1983) Principles of Nucleic Acid Structure, Springer-Verlag, New York.
37. Sklenar, V., & Bax, A. (1987) J. Magn. Reson. 74, 469-479.
38. Sowers, L. C., Fazakerley, G. V., Eritja, R., Kaplan, B. E., & Goodman, M. F. (1986) Proc. Natl. Acad. Sci. U.S.A. 83, 5434-5438.
39. Sowers, L. C., Eritja, R., Chen, F. M., Khwaja, T., Kaplan, B. E., Goodman, M. F., & Fazakerley, G. V. (1989) Biochem. Biophys. Res. Commun. 165, 89-92.
40. Topal, M. D., & Fresco, J. R. (1976) Nature 263, 285-289.
41. Ward, D. C., Reich, E., & Stryer, L. (1969) J. Biol. Chem. 244, 1228-1237.
42. Watanabe, S. M., & Goodman, M. F. (1981) Proc. Natl. Acad. Sci. U.S.A. 78, 2864-2868.
43. Watanabe, S. M., & Goodman, M. F. (1982) Proc. Natl. Acad. Sci. U.S.A. 79, 6429-6433.
44. Watson, J. D., & Crick, F. H. C. (1953a) Nature 171, 964-967.
45. Watson, J. D., & Crick, F. H. C. (1953b) Cold Spring Harbor Symp. Quant. Biol. 18, 123-131.
46. Werntges, H., Steger, G., Riesner, D., & Fritz, H.-J. (1986) Nucleic Acids Res. 14, 3773-3790.
47. Witanowski, M., Stefaniak, L., & Webb, G. A., Eds. (1986) in Annual Reports on NMR Spectroscopy, Vol. 18, Academic Press, London.
48. Wüthrich, K. (1986) NMR of Proteins and Nucleic Acids, John Wiley & Sons, New York.