Evolutionary Analysis of the Multigene Pregnancy-Specific β1-Glycoprotein Family: Separation of Historical and Nonhistorical Signals

Journal of Molecular Evolution

Volumn 42, Issue 2, 1996, Pages 273-280

  McLenachan, Patricia A ^a   Lockhart, Peter J ^a   Faber, H Rick ^a   Mansfield, Brian C ^a,b  

^a MASSEY UNIVERSITY   (New Zealand)

^b GEORGETOWN UNIVERSITY MEDICAL CENTER   (United States)

Author keywords

Evolutionary trees; Non neutral evolution; Pregnancy specific 1 glycoprotein; Protein modeling; RGD motif; Spectral analysis; Split decomposition; Structure and function

Indexed keywords

CARCINOEMBRYONIC ANTIGEN; CROSS REACTING ANTIGEN; PREGNANCY SPECIFIC BETA1 GLYCOPROTEIN;

AMINO ACID SEQUENCE; AMINO ACID SUBSTITUTION; AMINO TERMINAL SEQUENCE; ARTICLE; CARBOXY TERMINAL SEQUENCE; COMPUTER MODEL; EVOLUTION; GENE DUPLICATION; HUMAN; MULTIGENE FAMILY; PHYLOGENY; PROTEIN STRUCTURE;

CARCINOEMBRYONIC ANTIGEN; EVOLUTION, MOLECULAR; FEMALE; HUMANS; MODELS, MOLECULAR; MOLECULAR SEQUENCE DATA; MOLECULAR STRUCTURE; MULTIGENE FAMILY; PHYLOGENY; PREGNANCY; PREGNANCY-SPECIFIC BETA 1-GLYCOPROTEINS; VARIATION (GENETICS);

EID: 0029881440     PISSN: 00222844     EISSN: None     Source Type: Journal    
DOI: 10.1007/BF02198854     Document Type: Article

References (45)

1. Adler M, Lazarus RA, Dennis MS, Wagner G (1991) Solution structure of Kristin, a potent platelet aggregation inhibitor and GPIIb-IIIa antagonist. Science 253:445-448
2. Bandelt H-J, Dress AWM (1992) A canonical decomposition-theory for metrics on a finite set. Adv Math 92:47-105
3. Bates PA, Jingchu L, Stenberg MJE (1992) A predicted three dimensional structure for the carcinoembryonic antigen (CEA). FEBS Lett 30:207-214
4. Benchimol S, Fuks A, Jothy S, Beauchemin N, Shirota K, Stanners CP (1989) Carcinoembryonic antigen, a human tumor marker, functions as an intercellular adhesion molecule. Cell 57:327-334
5. 1-glycoprotein genes in human testis. Biochem Biophys Res Commun 166:622-629
6. 1-glycoprotein family. Mol Cell Biochem 106:161-170
7. 1-glycoprotein. Semin Reprod Endocrin 10:116-126
8. Corpet F (1988) Multiple sequence alignment with hierarchical clustering. Nucleic Acids Res 16:10881-10891
9. Devereux J, Haeberli P, Smithies O (1984) A comprehensive set of sequence analysis programs for the VAX. Nucleic Acids Res 12: 387-395
10. Epp O, Lattman EE, Schiffer M, Huber R, Palm W (1975) The molecular structure of a dimer composed of the variable portions of the Bence-Jones protein REI refined at 2.0 Angstroms resolution. Biochemistry 14:4943-4952
11. Felsenstein J (1985) Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39:783-791
12. Felsenstein J (1993) PHYLIP version 3.5. The University of Washington, Seattle, WA
13. Hendy MD, Steel MA, Penny D (1994) A discrete Fourier analysis for evolutionary trees. Proc Natl Acad Sci USA 91:3339-3343
14. Hughes AL, Nei M (1988) Pattern of nucleotide substitution at major histocompatibility complex class I loci reveals overdominant selection. Nature 335:167-170
15. Huson D, Wetzel R (1994) SPLITSTREE version 1.0. The University of Bielefeld, Germany
16. Jones TA, Thirup S (1986) Using known substructures in protein model building and crystallography. EMBO J 5:819-822
17. 1-glycoprotein family of the immunoglobulin superfamily: identification of new members and estimation of family size. Genomics 12:780-787
18. Kraulis P (1991) MOLSCRIPT: a program to produce both detailed and schematic plots of proteins. J Appl Crystall 24:946-950
19. Kumar S, Tamura K, Nei M (1993) MEGA: molecular evolutionary genetics analysis, version 1.01. The Pennsylvania State University, University Park, PA
20. Lin TM, Halbert SP, Spellacy WN (1974) Measurement of pregnancy-associated plasma proteins during human gestation. J Clin Invest 54:576-582
21. Main AL, Harvey TS, Baron M, Boyd J, Campbell ID (1992) The three-dimensional structure of the tenth type III module of fibronectin: an insight into RGD-mediated interactions. Cell 71:671-678
22. McLenachan PA, Rutherfurd KJ, Beggs KT, Sims SE, Mansfield BC (1994) Characterization of the PSG11 gene. Genomics 22:356-363
23. Ohta T (1992) A statistical examination of hypervariability in complementarity-determining regions of immunoglobulins. Mol Phylog Evol 1:305-311
24. 1-glycoprotein, a CEA gene family member, expressed in a human promyelocytic leukemia cell line, HL-60: structures of protein, mRNA and gene. Biochem Biophys Res Commun 163:1021-1031
25. Paxton RJ, Mooser G, Pande H, Lee TD, Shiveley J (1987) Sequence analysis of carcinoembryonic antigen: identification of glycosylation sites and homology with the immunoglobulin supergene family. Proc Natl Acad Sci USA 84:920-924
26. Penny D, Watson EE, Hickson RE, Lockhart PJ (1993) Some recent progress with methods for evolutionary trees. N Z J Bot 31:275-288
27. 2+-dependent intercellular adhesion molecule. Cell Growth Diff 1:527-533
28. 1-glycoprotein: homology with human carcinoembryonic antigen and related proteins. Gene 71:439-449
29. Rudert F, Zimmermann W, Thompson JA (1989) Intra- and interspecies analyses of the carcinoembryonic antigen (CEA) gene family reveal independent evolution in primates and rodents. J Mol Evol 29:126-134
30. Ruoslahti E, Pierschbacher MD (1987) New perspectives in cell adhesion: RGD and integrins. Science 238:491-497
31. Ryu SE, Qwong PD, Truneh A, Porter TG, Arthos J, Rosenberg M, Dai X, Xuong N, Axel R, Sweet RW, Hendrickson WA (1990) Crystal structure of an HIV-binding recombinant fragment of human CD4. Nature 348:419-425
32. Ryu SE, Truneh A, Sweet RW, Hendrickson WA (1994) Structures of an HIV and MHC binding fragment from human CD4 as refined in two crystal lattices. Structure 2:59-74
33. Saudek V, Atkinson RA, Pelton JT (1991) Three-dimensional structure of echistatin, the smallest RGD protein. Biochemistry 30:7369-7372
34. 1-glycoprotein (PSβG) and the carcinoembryonic antigen (CEA)-related proteins are members of the same multigene family. Biochem Biophys Res Commun 154:130-137
35. Swofford DL, Begle DP (1993) Manual for PAUP phylogenetic analysis using parsimony. Laboratory of Molecular Systematics, Smithsonian Institution, Washington, DC
36. 1-glycoprotein as a marker for pregnancy and malignancies. J Perinat Med 11:19-25
37. Tanaka T, Nei M (1989) Positive Darwinian selection observed at the variable-region genes of immunoglobulins. Mol Biol Evol 6:447-449
38. Thompson J, Zimmermann W (1988) The carcinoembryonic antigen gene family: structure, expression and evolution. Tumor Biol 9:63-83
39. Thompson J, Grunert F, Zimmerman W (1991) The carcinoembryonic gene family: molecular biology and clinical perspectives. J Clin Lab Anal 5:344-366
40. Thompson J, Koumari R, Wagner K, Barnet S, Schleussner C, Schrewe H, Zimmermann W, Muller G, Schemp W, Zaninetta D, Ammaturo D, Hardman N (1990) The human pregnancy-specific glycoprotein genes are tightly linked on the long arm of chromosome 19 and are coordinately expressed. Biochem Biophys Res Commun 167:848-859
41. Wang J, Yan Y, Garrett TPJ, Liu J, Rodgers RL, Garlick RL, Tarr GE, Husain Y, Reinharz EL, Harrison SC (1990) Atomic structure of a fragment of human CD4 containing two immunoglobulin domains. Nature 348:411-418
42. 1-glycoprotein: a new member of the carcinoembryonic antigen gene family. Biochem Biophys Res Commun 152:762-768
43. Williams AF (1987) A year in the life of the immunoglobulin superfamily. Immunol Today 8:298-303
44. 1-glycoprotein genes in hematopoietic cells. Mol Cell Biochem 122:147-158
45. 1-glycoprotein family; a new subfamily of the immunoglobulin gene superfamily. Biochemistry 29:2845-2852