Characterization of a complex satellite DNA in the mollusc Donax trunculus: Analysis of sequence variations and divergence

Gene

Volumn 169, Issue 2, 1996, Pages 157-164

  Plohl, M ^a   Cornudella, L ^a  

^a DEPT OF ENVIRONMENTAL CHEMISTRY   (Spain)

Author keywords

Concerted evolution; DNA sequencing; EcoRV restriction; Gene conversion; Marine invertebrate; Repetitive subfamilies; Tandem repetition; Wedged clam

Indexed keywords

REPETITIVE DNA; SATELLITE DNA;

ARTICLE; DNA SEQUENCE; EVOLUTION; GENE CONVERSION; MOLLUSC; NONHUMAN; NUCLEOTIDE REPEAT; PRIORITY JOURNAL;

EID: 0029878193     PISSN: 03781119     EISSN: None     Source Type: Journal    
DOI: 10.1016/0378-1119(95)00734-2     Document Type: Article

References (31)

1. Al-Sabti, K.: Chromosomal investigation of the mussel (Mytilus galloprovincialis) from the Adriatic sea. Cytobios 58 (1989) 149-153.
2. Badaracco, G., Baratelli, L., Ginelli, E., Meneveri, R., Plevani, P., Valsasnini, P. and Barigozzi, C.: Variations in repetitive DNA and heterochromatin in the genus Artemia. Chromosoma 95 (1987) 71-75.
3. Dover, G.A.: Molecular drive: a cohesive model of species evolution. Nature 299 (1982) 111-117.
4. Dover, G.A.: Molecular drive in multigene families: how biological novelties arise, spread and are assimilated. Trends Genet. 2 (1986) 159-165.
5. Dover, G.A.: Evolution of genetic redundancy for advanced players. Curr. Opin. Genet. Dev. 3 (1993) 902-910.
6. Drouin, G. and Dover, G.A.: Independent gene evolution in the potato actin gene family demonstrated by phylogenetic procedures for resolving gene conversions and the phylogeny of angiosperm actin genes. J. Mol. Evol. 31 (1990) 132-150.
7. Efstratiadis, A., Posakony, J.W., Maniatis, T., Lawn, R.M., O'Connell, C., Spritz, R.A., DeRiel, J.K., Forget, B.G., Weissman, S.M., Slightom, J.L., Blechl, A.E., Smithies, O., Baralle, F.E., Shoulders, C.C. and Proudfoot, N.J.: The structure and evolution of the human beta-globin gene family. Cell 21 (1980) 653-668.
8. Fowler, R.F. and Skinner, D.M.: Cryptic satellites rich in inverted repeats comprise 30% of the genome of a hermit crab. J. Biol. Chem. 260 (1985) 1296-1303.
9. Fowler, R.F., Bonnewell, V., Spann, M.S. and Skinner, D.M.: Sequences of three closely related variants of a complex satellite DNA diverge at specific domains. J. Biol. Chem. 260 (1985) 8964-8972.
10. Hinegardner, R.: Cellular DNA content of the mollusca. Comp. Biochem. Physiol. 47A (1974) 447-460.
11. Hoerz, W. and Zachau, H.G.: Characterization of distinct segments in mouse satellite DNA by restriction nucleases. Eur. J. Biochem. 73 (1977) 383-392.
12. Kass, D.H., Batzer, M.A. and Deininger, P.L.: Gene conversion as a secondary mechanism of short interspersed element (SINE) evolution. Mol. Cell. Biol. 15 (1995) 19-25.
13. Landsberger, N., Cancelli, S., Carettoni, D., Barigozzi, C. and Badaracco, G.: Nucleotide variation and molecular structure of the heterochromatic repetitive AluI DNA in the brine shrimp Artemia satina. J. Mol. Evol. 35 (1992) 486-491.
14. Lohe, A. and Roberts, A.: Evolution of satellite DNA sequences in Drosophila. In: Verma, R.S. (Ed.), Heterochromatin: Molecular and Structural Aspects. Cambridge University Press, Cambridge, 1988, pp. 148-186.
15. Martínez-Lage, A., González-Tizón, A. and Méndez, J.: Characterization of different chromatin types in Mytilus galloprovincialis L. after C-banding, fluorochrome and restriction endonuclease treatments. Heredity 72 (1994) 242-249.
16. Miklos, G.L.G.: Localized highly repetitive DNA sequences in vertebrate and invertebrate genomes. In: MacIntyre, R.J. (Ed.), Molecular Evolutionary Genetics. Plenum, New York, NY, 1985, pp. 241-345.
17. Pages, M.J. and Roizes, G.P.: Nature and organization of the sequence variations in the long-range periodicity calf satellite DNA I. J. Mol. Biol. 173 (1984) 143-157.
18. Plohl, M., Borštnik, B., Lucijanić-Justić, V. and Ugarković, Crossed D sign.: Evidence for random distribution of sequence variants in Tenebrio molitor satellite DNA. Genet. Res. 60 (1992) 7-13.
19. Plohl, M. and Ugarković, Crossed D sign.: Analysis of divergence of Alphitobius diaperinus satellite DNA - roles of recombination, replication slippage and gene conversion. Mol. Gen. Genet. 242 (1994a) 297-304.
20. Plohl, M. and Ugarković, Crossed D sign.: Characterization of two abundant satellite DNAs from the mealworm Tenebrio obscurus. J. Mol. Evol. 39 (1994b) 489-495.
21. Ruiz-Lara, S., Prats. E., Sainz, J. and Cornudella. L.: Cloning and characterization of a highly conserved satellite DNA from the mollusc Mytilus edulis. Gene 117 (1992) 237-242.
22. Sainz, J., Azorín, F. and Cornudella, L.: Detection and molecular cloning of highly repeated DNA in the sea cucumber sperm. Gene 80 (1989) 57-64.
23. Sainz, J. and Cornudella, L.: Preservation of a complex satellite DNA in two species of echinoderms. Nucleic Acids Res. 18 (1990) 885-890.
24. Sambrook, J., Fritsch, E.F. and Maniatis, T.: Molecular Cloning. A Laboratory Manual, 2nd ed. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY, 1989.
25. Sanger, F., Nicklen, S. and Coulson, A.R.: DNA sequencing with chain-terminating inhibitors. Proc. Natl. Acad. Sci. USA 74 (1977) 5463-5476.
26. Skinner, D.M.: Satellite DNAs. BioScience 27 (1977) 790-796.
27. Smith, G.P.: Evolution of repeated DNA sequences by unequal crossover. Science 191 (1976) 528-535.
28. Strachan, T., Webb, D. and Dover, G.A.: Transition stages of molecular drive in multiple-copy DNA families in Drosophila. EMBO J. 4 (1985) 1701-1708.
29. Stringfellow, L.A., Fowler, R.F., LaMarca, M.E. and Skinner, D.M.: Demonstration of remarkable sequence divergence in variants of a complex satellite DNA by molecular cloning. Gene 38 (1985) 145-152.
30. Tautz, D., Trick, M. and Dover, G.A.: Cryptic simplicity in DNA is a major source of genetic variation. Nature 322 (1986) 652-656.
31. Varadaraj, K. and Skinner, D.M.: Cytoplasmic localization of transcripts of a complex G + C rich crab satellite DNA. Chromosoma 103 (1994) 423-431.