Conformational characterization of DnaK and its complexes by small-angle X-ray scattering

Biochemistry

Volumn 35, Issue 10, 1996, Pages 3297-3308

  Shi, Li ^a,c   Kataoka, Mikio ^b,c   Fink, Anthony L ^c  

^a MERCK RESEARCH LABORATORIES   (United States)

^b OSAKA UNIVERSITY   (Japan)

^c UNIVERSITY OF CALIFORNIA   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL PROTEIN; HEAT SHOCK PROTEIN;

ARTICLE; ESCHERICHIA COLI; NONHUMAN; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEIN CONFORMATION; RADIATION SCATTERING; STRUCTURE ANALYSIS; X RAY ANALYSIS;

BACTERIA (MICROORGANISMS); ESCHERICHIA COLI;

EID: 0029876864     PISSN: 00062960     EISSN: None     Source Type: Journal    
DOI: 10.1021/bi951984l     Document Type: Article

References (90)

1. Ang, D., Liberek, K., Skowyra, D., Zylicz, M.& Georgopoulos, C. (1991) J. Biol. Chem. 266, 24233-24236.
2. Babu, Y. S., Sack, J. S., Greenhough, T. J., Bugg, C. E., Means, A. R., & Cook, W. J. (1985) Nature (London) 315, 37.
3. Beckmann, R. B., Mizzen, L. A., & Welch, W. J. (1990) Science 248, 850-854.
4. Beltran, J. R., Mascarenhas, Y. P., Craievich, A. F., & Laure, C. J. (1990) Eur. Biophys. J. 17, 325-329.
5. Blond-Elguindi, S., Fourie, A. M., Sambrook, J. F., & Gething, M.-J. H. (1993) J. Biol. Chem. 268, 12730-12735.
6. Bole, D. G., Hendershot L. M., & Kearny, J. F. (1986) J. Cell Biol. 102, 1558-1566.
7. Burdon, R. H. (1988) Endeavour 12(3), 133-138.
8. Cegielska, A., & Georgopoulos, C. (1989) J. Biol. Chem. 264, 21122-21130.
9. Chappell, T. G., Konforti, B. B., Schmid, S. L., & Rothman, J. E. (1987) J. Biol. Chem. 262, 746-751.
10. Chen, L., Gavini, N., Tsuruta, H., Eliezer, D., Burgess, B., Doniach, S. Hodgson, K. O. (1994) J. Biol. Chem. 269, 3290-3294.
11. Corbett, R. J. T., & Roche, R. S. (1984) Biochemistry 23, 1888-1894.
12. Craig, E. A. (1993) Science 260, 1902-1904.
13. Dierks, T., Klappa, P., Wiech, H., & Zimmermann, R. (1993) Philos. Trans. R. Soc. London, B 339, 335-341.
14. Dorner, A. J., Bole, D. G., & Kaufman, R. J. (1987) J. Cell Biol. 105, 2665-2674.
15. Heidorn, D. B., & Trewhella, J. (1988) Biochemistry 27, 909-915.
16. Eliezer, D., Frank, P., Gills, N., Newton, W. E., Doniach, S., & Hodgson, K. O. (1993a) J. Biol. Chem. 268, 20953-20957.
17. Eliezer, D., Chiba, K., Tsuruta, H., Doniach, S., Hodgson, K. O., & Kihara, H. (1993b) Biophys. J. 65, 912-917.
18. Ellis, R. J. (1994) Curr. Opin. Struct. Biol. 4, 117-122.
19. Fasman, G. D. (1983) Handbook of Biochemistry & Molecular Biology, 3rd ed., Vol. 1, p 149, CRC Press, Inc., Boca Raton, FL.
20. Feigin, L. A., Svergun, D. I. (1987) Structure Analysis by Small-Angle X-ray and Neutron Scattering, Plenum Press, New York.
21. Flaherty, K. M., DeLuca-Flaherty, C., & McKay, D. B. (1990) Nature 346, 623-628.
22. Flaherty, K. M., McKay, D. B., Kabsch, W., & Holmes, K. C. (1991) Proc. Natl. Acad. Sci. U.S.A. 88, 5041-5045.
23. Flanagan, J. M., Kataoka, M., Shortle, D., & Engelman, D. M. (1992) Proc. Natl Acad. Sci. U.S.A. 89, 748-752.
24. Flanagan, J. M., Kataoka, M., Fujisawa, T., & Engelman, D. M. (1993) Biochemistry 32, 10359-10370.
25. Flynn, G. C., Chappell, T. G., & Rothman, J. E. (1989) Science 245, 385-390.
26. Flynn, G. C., Pohl, J., Flocco, M. T., & Rothman, J. E. (1991) Nature 353, 726-730.
27. Frydman, J., Nimmesgern, E., Ohtsuka, K., & Hartl, F. U. (1994) Nature 370, 111-117.
28. Fujisawa, T., Ueki, T., Inoko, Y., & Kataoka, M. (1987) J. Appl. Crystallogr. 20, 349-355.
29. Gast, K., Damaschun, H., Misselwitz, R., Müller-Frohne, M., Zirwer, D., & Damaschun, G. (1994) Eur. Biophys. J. 23, 297-305.
30. Gething, M.-J., & Sambrook, J. (1992) Nature 355, 33-45.
31. Gething, M. J., McCammon, K., & Sambrook, J. (1986) Cell 46, 939-950.
32. Glatter, O., & Kratky, O. (1982) Small Angle X-ray Scattering. Academic Press, New York.
33. Guinier, A. (1939) Ann. Phys. 12, 161-237.
34. Guinier, A., & Fournet, G. (1955) Small Angle X-ray Scartering, John-Wiley & Sons, New York.
35. Hartl, F. U., & Neupert, W. (1990) Science 247, 930-938.
36. Hartl, F. U., Martin, J., & Neupert, W. (1992) Annu. Rev. Biochem. 21, 293-322.
37. Hendershot, L. M., Ting, J., & Lee, A. S. (1988) Mol. Cell. Biol. 8, 4250-4256.
38. Hendrick, J. P., & Hartl, F.-U. (1993) Annu. Rev. Biochem. 62, 349-384.
39. Hynes, T. R., Kautz, R. A., Goodman, M. A., Gill, J. F., & Fox, R. O. (1989) Nature 339, 73-76.
40. Ikura, M., Kay, L. E., & Bax, A. (1990) Biochemistry 29, 4659-4667.
41. Kang, P. J., Ostermann, J., Shilling, J., Neupert, W., Craig, E. A., & Pfanner, N. (1990) Nature 348, 137-143.
42. Kataoka, M., Head, J. F., Seaton, B. A., & Engelman, D. M. (1989) Proc. Natl. Acad. Sci. U.S.A. 86, 6944-6948.
43. Kataoka, M., Head, J. F., Vorherr, T., Krebs, J., & Carafoli, E. (1991) Biochemistry 30, 6247-6251.
44. Kataoka, M., Hagihara, Y., Mihara, K., & Goto, Y. (1993) J. Mol. Biol. 229, 591-596.
45. Kataoka, M., Flanagan, J. M., Tokunaga, F., & Engelman, D. M. (1994) in Synchrotron Radiation in the Bioscience (Chance. B., Deisenhofer, J., Ebashi, S., Goodhead, D. T., Helliwell, J. R., Huxley, H. E., Iizuka, T., Kirz, J., Mitsui, T., Rubenstein, E., Sakabe, N., Sasaki, T., Schahl, G., Schumann, H. B., Wuthrich, K., & Zaccai, G., Eds.) pp 187-194, Clarendon Press, Oxford.
46. Kataoka, M., Nishii, I., Fujisawa, T., Ueki, T., Tokunasa, F., & Goto, Y. (1995) J. Mol. Biol. 249, 215-228.
47. Kaumaya, P. T. P., Berndt, K. D., Heidorn, D. B., Trewhella, J., Kezdy, F. J., & Goldberg, E. (1990) Biochemistry 29, 13-23.
48. Kim, D., Lee, Y. J., & Corry, P. M. (1992) J. Cell. Physiol. 133, 353-361.
49. Kumosinski, T. F., & Pessen, H. (1985) Methods Enzymol. 117, 154-182.
50. Lam, K. T., & Calderwood, S. K. (1992) Biochem. Biophys. Res. Commun. 184, 167-174.
51. Landry, S. J., Jordan, R., McMacken, R., & Gierasch, L. M. (1992) Nature 355, 455-457.
52. Lane, D. P., Midgley, C., & Hupp T. (1993) Philos. Trans. R. Soc. London, B 339, 369-373.
53. Langer, T., Lu, C., Echols, H., Flanagan, J., Hayer, M. K., & Hartl, F. U. (1992) Nature 356, 683-689.
54. LaRossa & Van Dyk (1991) Mol. Microbiol. 5, 529-534.
55. Lattman, E. E. (1994) Curr. Opin. Struct. Biol. 4, 87-92.
56. Lattman, E. E., Fiebis, K. M., & Dill, K. A. (1994) Biochemistry 33, 6158-6166.
57. Liberek, K., Osipuk, J., Zylicz, M., Ang, D., Skorko, J., & Georgopoulos, C. (1990) J. Biol. Chem. 265, 3022-3029.
58. Liberek, K., Skowyra, D., Zylicz, J., Johnson, C., & Georgopoulos, C. (1991a) J. Biol. Chem. 266, 14491-14496.
59. Liberek, K., Marszalek, J., Ang, D., Georgopoulos, C., & Zylicz, M. (1991b) Proc. Natl. Acad. Sci. U.S.A. 88, 2874-2878.
60. Luzzati, V., Witz, J., & Nicolaieff, A. (1961) J. Mol. Biol. 3, 367.
61. Marshall, J. M., Brown, A. J., & Ponting, C. P. (1994) Biochemistry 33, 3599-3606.
62. McCarty, J. S., & Walker, G. C. (1991) Proc. Natl. Acad. Sci. U.S.A. 88, 9513-9517.
63. McDonald, R. C., Engelman, D. M., & Steitz, T. A. (1979) J. Biol. Chem. 254, 2942-2943.
64. McKay, D. B. (1994) reported at Cold Spring Harbor 1994 Maymeeting (The Biology of Heat Shock Proteins and Molecular Chaperones).
65. Moore, P. B. (1980) J. Appl. Crystallogr. 13, 168-175.
66. Morimoto, R. I., Tissieres, A., & Georgopoulos, C., Eds. (1990) Stress Proteins in Biology & Medicine, Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.
67. Muller, K., Kratky, O., Roschlau, P., & Hess, B. (1972) Hoppe-Seyler's Z. Physiol. Chem. 353, 803-809.
68. Neupert, W., & Pfanner, N. (1993) Philos. Trans. R. Soc. London B 339, 355-262.
69. Nozaki, Y. (1972) Methods Enzymol. 26, p 43.
70. Pace, C. N., Shirley, B. A . & Thomson, J A (1989) in Protein Structure: a practical approach (Creighton. T E. Ed ) p 311. IRL, Oxford.
71. Palleros, D. R., Welch, W. J., & Fink, A I. (1991) Proc Natl Acad. Sci. U.S.A. 88, 5719-5723
72. Palleros, D. R., Reid, K. L., McCarty, J S , Walker, G C. & Fink, A. L. (1992) J. Biol Chem. 267, 5279-5285
73. Palleros, D. R., Reid, K L , Shi, L., Welch, W. J., & Fink, A L (1993a) Nature 365, 664-666
74. Palleros, D. R., Shi, L. Reid, K. I. & Fink, A I. (1993b) Biochemistry 32, 4314-4321.
75. Palleros, D. R., Reid, K. L., Shi, L., & Fink, A L (1993c) FEBS Lett. 336, 124-128.
76. Palleros, D. R., Shi, L. Reid, K. L , & Fink, A. L (1994a) J Biol Chem. 269, 13107-13114.
77. Palleros, D. R., Shi, L., Reid, K. L., & Fink, A L (1994b) in Protein Techniques (VI), pp 467-474.
78. Paradossl, G. (1993) J. Chem. Educ. 70, 440-443.
79. Ponting, C. P., Holland, S. K , Cederholm-Williams, S. A., Marshall, J. M., Brown, A. J., Spragson, G., & Blake, C C. F (1992) Biochim. Biophys. Acta 1159, 155-161
80. Pickover, C. A , McKay, D. B., Engelman, D. M., & Steitz, T. A. (1979) J Biol Chem. 254, 11323-11329.
81. Ptitsyn, O. B (1992) in Protein Folding (Creighton, T. E., Ed.) pp 243-300, W. H. Freeman & Company, New York.
82. Sadis, S. & Hightower, L. E. (1992) Biochemistry 31, 9406-9412.
83. Schmid, S L, Braell, W. A., & Rothman, J. E. (1985) J. Biol. Chem. 260, 10057-10062.
84. Shi. L. (1994) Ph.D. Thesis, University of California, Santa Cruz.
85. Shi. L. Palleros, D. R., & Fink, A. L. (1994) Biochemistry 33, 7536-7546
86. Shottle D , & Meeker, A. K. (1989) Biochemistry 28, 936-944.
87. Svergun, D I., Semenyuk, A. V., & Feigin, L. A. (1988) Acta Crystallogr. A44, 244-250.
88. Ungermann, C., Neupert, W., & Cyr, D. M. (1994) Science 266, 1250-1253.
89. Welch, W J. (1993) Philos. Trans. R. Soc. London B 339, 327-333
90. Wickner, W. T. (1994) Science 266, 1197-1198.