Genomic imprinting and mammalian development

Placenta

Volumn 17, Issue 1, 1996, Pages 3-14

  Franklin, G C ^a   Adam, G I R ^a   Ohlsson, R ^a  

^a UPPSALA UNIVERSITY   (Sweden)

Author keywords

[No Author keywords available]

Indexed keywords

CHROMATIN STRUCTURE; DEVELOPMENT; DNA MODIFICATION; GENE CONTROL; GENE EXPRESSION; GENOME IMPRINTING; MAMMAL; METHYLATION; PLACENTA DISORDER; PRIORITY JOURNAL; REVIEW;

EID: 0029873639     PISSN: 01434004     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0143-4004(05)80638-1     Document Type: Article

References (107)

1. (In press) Adam G.I.R. Cui H. Miller S.J. Flam F. Ohlsson R. Allele-specific in situ hybridization (ASISH) analysis: A novel technique which resolves differential allelic usage of H19 within the same cell lineage during human placental development Development 122 1995
2. Akse S.R. Klein V.R. Woodruff J.D. Choriocarcinoma of the ovary Obstetrics and Gynecology 66 1985 111 114
3. Ariel M. Robinson E. McCarrey J.R. Cedar H. Gamete-specific methylation correlates with imprinting of the murine Xist gene Nature Genetics 9 1995 312 315
4. Bartolomei M. Zemel S. Tilghman B.M. Parental imprinting of the mouse H19 gene Nature 351 1991 153 155
5. Barton S. Surani M. Norris M. Role of paternal and maternal genomes in mouse development Nature 311 1984 374 376
6. Beechey C.V. Cattanach B.M. Genetic imprinting map Mouse Genome 93 1995 92
7. Blobel G. Gene gating: a hypothesis Proceedings of the National Academy of Sciences, USA 82 1985 8527 8529
8. Boyes J. Bird A. DNA methylation inhibits transcription directly via a methyl-CpG binding protein Cell 64 1991 1123 1134
9. Boyes J. Bird A. Repression of genes by DNA methylation depends on CpG density and promoter strength: evidence for involvement of a methyl-CgP binding protein EMBO Journal 11 1992 327 333
10. Brandeis M. Kafri T. Ariel M. Chaillet J.R. McCarrey J. Razin A. Cedar H. The ontogeny of allele-specific methylation associated with imprinted genes in the mouse EMBO Journal 12 1993 3669 3677
11. Brandeis M. Frank D. Keshet I. Siegfried Z. Mendelsohn M. Nemes A. Temper V. Razin A. Cedar H. Sp1 elements protect a CpG island from de novo methylation Nature 371 1994 435 438
12. Brannan C. Dees E. Ingram R. Tilghman S. The product of the H19 gene may function as an RNA Molecular and Cellular Biology 10 1990 28 36
13. Brockdorff N. Ashworth A. Kay G.F. McCabe V.M. Norris D.P. Cooper P.J. Swift S. Rastan S. The product of the mouse Xist gene is a 15 kb inactive X-specific transcript containing no conserved ORF and located in the nucleus Cell 71 1992 515 526
14. Buiting K. Saitoh S. Gross S. Dittrich B. Schwartz S. Nicholls R.D. Horsthemke B. Inherited microdelections in the Angelman and Prader-Willi syndromes define an imprinting centre on human chromosome 15 Nature Genetics 9 1995 395
15. Chan C. Rastelli L. Pirrotta V. A Polycomb response element in the Ubx gene that determines an epigenetically inherited state of repression EMBO Journal 13 1994 2553 2564
16. Chandra H.S. Nanjundiah V. The evolution of genomic imprinting Development Suppl. 1990 9 14
17. Clark S.J. Harrison J. Frommer M. CpNpG methylation in mammalian cells Nature Genetics 10 1995 20 27
18. Clark S.J. Harrison J. Paul C.L. Frommer M. High sensitivity mapping of methylated cytosines Nucleic Acids Research 22 1994 2990 2997
19. Crouse H.V. The controlling element in sex chromosome behaviour in Sciara Genetics 45 1960 1429 1443
20. DeChiara T. Efstratiadis A. Robertson E. A growth-deficiency phenotype in heterozygous mice carrying an insulin-like growth factor II gene disrupted by targeting Nature 345 1990 78 80
21. DeChiara T. Robertson E. Efstratiadis A. Parental imprinting of the mouse insulin-like growth factor gene II Cell 64 1991 849 859
22. Drezen J.M. Barra J. Babinet C. Morello D. MHC class I genes are not imprinted in the mouse placenta Immunogenetics 40 1994 62 65
23. Dynan W.S. Modularity in promoters and enhancers Cell 58 1989 1 4
24. Efstratiadis A. Parental imprinting of autosomal mammalian genes Current Opinions in Genetics and Development 4 1994 265 280
25. Ekström T.J. Cui H. Li X. Ohlsson R. Mono-allelic expression of IGF2 at the feto-maternal boundary Molecular Reproduction Development 41 1995 177 183
26. Ekström T.J. Cui H. Li X. Ohlsson R. Promoter-specific IGF2 imprinting status and its plasticity during human liver development Development 121 1995 309 316
27. Feinberg A.J. Genomic imprinting and gene activation in cancer Nature Genetics 4 1993 110 113
28. Forejt J. Gregorová S. Genetic analysis of genomic imprinting: an Imprintor-1 gene controls inactivation of the paternal copy of the mouse Tme locus Cell 70 1992 443 450
29. Gatewood J.M. Cook G.R. Balhorn R. Bradbury E.M. Schmid C.W. Sequence-specific packaging of DNA in human sperm chromatin Science 236 1987 962 964
30. Giannoukakis N. Deal C. Paquette J. Goodyer C. Polychronakos C. Parental genomic imprinting of the human IGF2 gene Nature Genetics 4 1993 98 101
31. Giddings S.J. King C.D. Harman K.W. Flood J.F. Carnaghi L.R. Allele-specific inactivation of insulin 1 and 2, in the mouse yolk sac, indicates imprinting Nature Genetics 6 1994 310 313
32. Guillemot F. Nagy A. Auerbach A. Rossant J. Joyner A.L. Essential role of Mash-2 in extra-embryonic development Nature 371 1994 333
33. Guillemot F. Caspary T. Tilghman S.M. Copeland N.G. Gilbert D.J. Jenkins N.A. Anderson D.J. Joyner A.L. Rosant J. Nagy A. Genomic imprinting of Mash-2, a mouse gene required for trophoblast development Nature Genetics 9 1995 235 242
34. Gunaratne P.H. Nakao M. Ledbetter D.H. Sutcliffe J.S. Chinault A.C. Tissue-specific and allele-specific replication timing control in the imprinted human Prader-Willi syndrome region Genes and Development 9 1995 808 820
35. Haig D. Trivers R. The evolution of parental imprinting: a review of hypotheses Ohlsson R. Hall K. Ritzen M. Genomic Imprinting: Causes and Consequences 1995 Cambridge University Press Cambridge 17 28
36. Hall J. Genomic imprinting: review and relevance to human diseases American Journal of Human Genetics 46 1990 857 873
37. Hall J.G. Genomic imprinting Current Opinions in Genetic Development 1 1991 34 39
38. Harrison K.B. X-chromosome inactivation in the human cytotrophoblast Cytogenetics and Cell Genetics 52 1989 37 41
39. Hashimoto K. Azuma C. Koyama M. Ohashi K. Kamiura S. Nobunaga T. Kimura T. Tokugawa Y. Kanai T. Saji F. Loss of imprinting in choriocarcinoma Nature Genetics 9 1995 109 110
40. kip2, a cyclin-dependent kinase inhibitor, in mouse Nature Genetics 11 1995 204 206
41. Hatada I. Sugama T. Mukai T. A new imprinted gene cloned by a methylation-sensitive genome scanning method Nucleic Acids Research 21 1993 5577 5582
42. Hayashizaki Y. Hirotsune S. Okazaki Y. Hatada I. Shibata H. Kawai J. Hirose K. Watanabe S. Fushiki S. Wada S. Sigimoto T. Kobayakawa K. Kawara T. Katsuki M.S.M. Mukai T. Restriction landmark scanning method and its application Electrophoresis 14 1993 251 258
43. Hayashizaki Y. Shibata H. Hirotsune S. Sugino H. Okazaki Y. Sasaki N. Hirose K. Imoto H. Okuizumi H. Maramatzu M. Komatsubara H. Shiroshi T. Moriwaki K. Katsuki M. Hatano N. Sasaki H. Ueda T. Takagi N. Plass C. Chapman V.M. Identification of an imprinted U2af binding protein related sequence on mouse chromosome 11 using the RLGS method Nature Genetics 6 1994 33 40
44. Issa J.-P.J. Ottavaniano Y.L. Celano P. Hamilton S.R. Davidson N.E. Baylin S.R. Methylation of the oestrogen receptor CpG island links aging and neoplasia in human colon Nature Genetics 7 1994 536 540
45. Jinno Y. Yun K. Nishiwaki K. Kubota T. Ogawa O. Reeve A. Niikawa N. Mosaic and polymorphic imprinting of the WT1 gene in humans Nature Genetics 6 1994 305 309
46. Kalscheuer V.M. Mariman E.C. Schepens M.T. Rehder H. Ropers H.-H. The insulin-like growth factor type-2 receptor gene is imprinted in the mouse but not in humans Nature Genetics 5 1993 74 78
47. Kanbour-Shakir A. Zhang X. Rouleau A. Armstrong D.T. Kunz H.W. McPherson T.A. Gill T.J. III Gene imprinting and major histocompatibility complex class I antigen expression in the rat placenta Proceedings of the national Academy of Sciences, USA 87 1990 444 448
48. Kancko-Ishino T. Kuroiwa Y. Miyoshi N. Kohda T. Suzuki R. Yokoyama M. Vioille S. Barton S.C. Ishino F. Surani M.A. Peg1/Mest imprinted gene on chromosome 6 identified by cDNA subtraction hybridization Nature Genetics 11 1995 52 59
49. Kay G.F. Barton S.C. Surani M.A. Rastan S. Imprinting and X chromosome counting mechanisms determine Xist expression in early mouse development Cell 77 1994 639 650
50. Kay G.F. Penny G.D. Patel D. Ashworth A. Brockdorff N. Rastan S. Expression of Xist during mouse development suggests a role in the initiation of X chromosome inactivation Cell 72 1993 171 182
51. Kitsberg D. Selig S. Brandeis M.I.S. Keshet I. Driscoll D.J. Nicholls R.D. Cedar H. Allele-specific replication timing of imprinted gene regions Nature 364 1993 459 463
52. Latham K. Doherty A. Scott C. Schultz R. Igf2r and Igf2 gene expression in androgenetic, gynogenetic and parthenogenetic preimplantation mouse embryos: absence of regulation by genomic imprinting Genes and Development 8 1994 290 299
53. Leff S. Brannan C. Reed M. Ozcelik T. Francke U. Copeland N. Jenkins N. Maternal imprinting of the mouse Snrpn gene and conserved linkage homology with the human Prader-Willi syndrome region Nature Genetics 2 1992 259 264
54. Leighton P.A. Ingram R.S. Eggenschwiler J. Efstradiatis A. Tilghman S.M. Disruption of imprinting caused by delection of the H19 region in mice Nature 375 1995 34 39
55. Lewin B. Chromatin and gene expression: constant questions, but changing answers Cell 79 1994 397 406
56. Li E. Beard C. Jaenisch R. Role for DNA methylation in genomic imprinting Nature 366 1993 362 365
57. Li E. Bestor T.H. Jaenisch R. Targeted mutation of the DNA methyltransferase gene results in embryonic lethality Cell 69 1992 915 926
58. Li X. Adam G. Cui H. Sandstedt B. Ohlsson R. Ekström T.J. Expression, promoter usage and parental imprinting status of insulin-like growth factor II (IGF2) in human hepatoblastoma: uncoupling of IGF2 and H19 imprinting Oncogene 11 1995 221 229
59. Lichtenstein M. Keini G. Cedar H. Bergman Y. B cell-specific demethylation: a novel role for the intronic κ chain enhancer sequence Cell 76 1994 913 923
60. Lyon M.F. Gene action in the X chromosome of the mouse ( Mus musculus L.) Nature 190 1961 373
61. Lyon M.F. Some milestones in the history of X-chromosome inactivation Annual Review of Genetics 26 1992 16 28
62. Lyon M.F. Zenthon J. Evans E.P. Burtenshaw M.D. Wareham K.D. Williams E.D. Lack of inactivation in a mouse X-linked gene physically separated from the inactivation center Journal of Embryology Experiments of Morphology 97 1986 75 85
63. Majumder S. DePamphilis M.L. TATA-dependent enhancer stimulation of promoter activity in mice is developmentally acquired Molecular and Cellular Biology 14 1994 4258 4268
64. Majumder S. Miranda M. DePamphilis M.L. Analysis of gene expression in mouse preimplanation embryos demonstrates that the primary role of enhancers is to relieve repression of promoters EMBO Journal 12 1993 1131 1140
65. McGrath J. Solter D. Completion of mouse embryogenesis requires both the maternal and paternal genomes Cell 37 1984 179 183
66. McKune K. Woychik N.A. Functional substitution of an essential yeast RNA polymerase subunit by a highly conserved mammalian counter-part Molecular and Cellular Biology 14 1994 4155 4159
67. Monk M. Bolibelik M. Lehnert S. Temporal and regional changes in DNA methylation in the embryonic extra-embryonic and germ cell lineages during mouse embryo development Development 99 1987 371 382
68. Moore T. Haig D. Genomic imprinting in mammalian development: a parental tug-of-war Trends In Genetics 7 1991 45 49
69. Mutter G.L. Stewart C.L. Chaponot M.L. Pomponio R.J. Oppositely imprinted genes H19 and insulin-like growth factor 2 are co-expressed in human androgenetic trophoblast American Journal of Human Genetics 53 1993 1096 1102
70. Neumann B. Kubicka P. Barlow D.P. Characteristics of imprinted genes Nature Genetics 9 1995 12 13
71. Norris D.P. Patel D. Kay G.F. Penny G.D. Brockdorff N. Sheardown S.A. Rastan S. Evidence that random and imprinted Xist expression is controlled by preemptive methylation Cell 77 1994 41 51
72. Ogawa O. McNoe L.A. Eccles M.R. Morison I.M. Reeve A.E. Human isulin-like growth factor type I and II receptors are not imprinted Human Molecular Genetics 2 1993 2163 2165
73. Ohlsson R. Barlow D. Surani A. Impression of imprints Trends in Genetics 10 1994 415 417
74. Ohlsson R. Nyström A. Pfeifer-Ohlsson S. Töhönen V. Hedborg F. Schofield P. Flam F. Ekström T.J. IGF2 is parentally imprinted during human embryogenesis and in the Beckwith-Weidemann syndrome Nature Genetics 4 1993 94 97
75. Pazin M.J. Kamakaka R.T. Kadonaga J.T. ATP-dependent nuclcosome reconfiguration and transcriptional activation from preassembled chromatin templates Science 266 1994 2007 2011
76. Perry C.A. Allis C.D. Annunziato A.T. Parental nucleosomes segregated to newly replicated chromatin are underacetylated relative to those assembled de novo Biochemistry 32 1993 13615 13623
77. Petersen K. Sapienza C. Imprinting the genome: imprinted genes, and a hypothesis for their interaction Annual Review of Genetics 27 1993 7 31
78. Poccia D. Remodelling of nucleoproteins during gametogenesis, fertilization and early development International Review of Cytology 105 1986 1 65
79. Prioleau M.N. Huet J. Sentenac A. Méchali M. Competition between chromatin and transcription complex assembly regulates gene expression during early development Cell 77 1994 439 449
80. Raff J.W. Kellum R. Alberts B. The Drosophila GAGA transcription factor is associated with specific regions of heterochromatin throughout the cell cycle EMBO Journal 13 1994 5977 5983
81. Randall S.K. Kelly T.J. The fate of parental nucleosomes during SV40 DNA replication Journal of Biological Chemistry 267 1992 14259 14265
82. Rowlands T. Baumann P. Jackson S.P. The TATA-binding protein: a general transcription factor in eukaryotes and archaebacteria Science 264 1994 1326 1329
83. Sapienza C. Genome imprinting and dominance modification Annals of the New York Academy of Science 564 1989 24 38
84. Sogo J.M. Stahl H. Koller T. Knippers R. Structure of the replicating SV40 minichromosomes: the replication fork, core histone segregation and terminal structures Journal of Molecular Biology 189 1986 189 204
85. Solter D. Differential imprinting and expression of maternal and paternal genomes Annual Review of Genetics 22 1988 127 146
86. Starkey P.M. The decidua and factors controlling placentation Redman C. Sargent I. Starkey P. The Human Placenta 1993 Blackwell Scientific Publications Oxford 362 413
87. Steenman M.J. Rainier S. Dobry C.J. Grundy P. Horon I.L. Feinberg A.P. Loss of imprinting of IGF2 is linked to reduced expression and abnormal methylation of H19 in Wilms' tumour Nature Genetics 7 1994 433 439
88. Stöger R. Kubicka P. Liu C.-G. Kafri T. Razin A. Cedar H. Barlow D. Maternal-specific methylation of the imprinted mouse Igf2r locus identifies the expressed locus as carrying the imprinting signal Cell 73 1993 61 71
89. Surani M.A.H. Evidence and consequences of differences between maternal and paternal genomes during embryogenesis in the mouse Rossant I. Pedersen R. Experimental Approaches to Mammalian Embryonic Development 1986 Cambridge University Press Cambridge 401 435
90. Surani M. Barton S. Norris M. Development of reconstituted mouse eggs suggest imprinting of the genome during gametogenesis Nature 308 1984 548 550
91. Surani M.A.H. Reik W. Norris M.L. Barton S.C. Influence of germline modifications of homologous chromosomes on mouse development Journal of Embryology Experiments in Biology 97 Suppl. 1986 123 136
92. Surani M.A. Fergusson-Smith A.C. Sasaki H. Barton S. Imprinting of H19 and Xist in uniparental embryos Ohlsson R. Hall K. Ritzen M. Genomic Imprinting: Causes and Consequences 1995 Cambridge University Press Cambridge 142 156
93. Sutcliffe J.S. Nakao M. Christian S. Örstavik K.H. Tommerup N. Ledbetter D.H. Beaudet A.L. Deletions of a differentially methylated CpG island at the SNRPN gene define a putative imprinting control region Nature Genetics 8 1994 52 58
94. Szulman A.E. Surti U. Complete and partial hydatiform moles: cytogenic and morphological aspects Pattilo R.A. Hussa P.A. Human Trophoblast Neoplasma 1984 Plenum Publishing Corporation New York 135 145
95. Takagi N. Sasaki M. Preferential expression of the paternally derived X chromosome in the extraembryonic membranes of the mouse Nature 256 1975 640 642
96. Tremblay K.D. Saam J.R. Ingram R.S. Tilghman S.M. Bartolomei M.S. A paternal-specific methylation imprint marks the alleles of the mouse H19 gene Nature Genetics 9 1995 407 413
97. Varmuza S. Mann M. Genomic imprinting-defusing the ovarian time bomb Trends in Genetics 10 1994 118 123
98. Villar A.J. Pedersen R.A. Parental imprinting of the Mas protooncogene in mouse Nature Genetics 8 1994 373 379
99. Vu T.H. Hoffman A.R. Promoter-specific imprinting of the human insulin-like growth factor-II gene Nature 371 1994 714 717
100. Walsh C. Glaser A. Fundele R. Ferguson-Smith A. Barton S. Surani M.A. Ohlsson R. The non-viability of uniparental mouse conceptuses correlates with the loss of the products of imprinted genes Mechanisms of Development 46 1994 55 62
101. Walsh C. Miller S. Flam F. Fisher R.A. Ohlsson R. Paternally-derived H19 is differentially expressed in malignant and non-malignant trophoblasts Cancer Research 55 1995 1111 1116
102. Wevrick R. Kerns J.A. Francke U. Identification of a novel paternally expressed gene in the Prader-Willi syndrome region Human Molecular Genetics 3 1994 1877
103. Whitt G.S. Developmental genetics of fishes: isozymic analysis of differential gene expression American Zoology 21 1981 549 572
104. Wolffe A.P. Activating chromatin Current Biology 1 1991 366 368
105. Workman J.L. Buchman A.R. Multiple functions of nucleo-somes and regulatory factors in transcription Trends in Biochemical Science 18 1993 90 95
106. Xu Y. Goodyer C.G. Deal C. Polychronakos C. Functional polymorphism in the parental imprinting of the human IGF2R gene Biochemical Biophysical Research Communications 197 1993 747 754
107. Zuccotti M. Monk M. Methylation of the mouse Xist gene in sperm and eggs correlates with imprinted Xist expression and paternal X-inactivation Nature Genetics 9 1995 316 320