Analysis of thermodynamic determinants in helix propensities of nonpolar amino acids through a novel free energy calculation

Journal of the American Chemical Society

Volumn 118, Issue 5, 1996, Pages 995-1001

  Wang, Jing ^b   Purisima, Enrico O ^a  

^a NATIONAL RESEARCH COUNCIL CANADA   (Canada)

^b NONE

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; ENTROPY; HYDROPHOBICITY; PROTEIN STRUCTURE; THERMODYNAMICS;

EID: 0029865495     PISSN: 00027863     EISSN: None     Source Type: Journal    
DOI: 10.1021/ja953347o     Document Type: Article

References (27)

1. Horovitz, A.; Matthews, J. M.; Fersht, A. R. J. Mol. Biol. 1992, 227, 560-568.
2. Blaber, M.; Zhang, X.; Matthews, B. W. Science 1993, 260, 1637-1640.
3. Creamer, T. P.; Rose, G. D. Proc. Natl. Acad. Sci. U.S.A. 1992, 89, 5937-5941.
4. Creamer, T. P.; Rose, G. D. Proteins 1994, 19, 85-97.
5. Blaber, M.; Zhang, X.; Lindstrom, J. D.; Pepiot, S. D.; Baase, W. A.; Matthews, B. W. J. Mol. Biol. 1994, 235, 600-624.
6. Lee, K. H.; Xie, D.; Freire, E.; Amzel, L. M. Proteins 1994, 20, 68-84.
7. Wang, J.; Szewczuk, Z.; Yue, S.; Tsuda, Y.; Konishi, Y.; Purisima, E. O. J. Mol. Biol. 1995, 253, 473-492.
8. Purisima, E. O.; Nilar, S. H. J. Comp. Chem. 1995, 16, 681-689.
9. Hermans, J.; Anderson, A. G.; Yun, R. H. Biochemistry 1992, 31, 5646-5653.
10. Komeiji, Y.; Honda, N.; Yamato, I. Biophys. Chem. 1993, 47, 113-121.
11. Weiner, S. J.; Kollman, P. A.; Nguyen, D. T.; Case, D. A. J. Comp. Chem. 1986, 7, 230-252.
12. Cabani, S.; Gianni, P.; Mollica, V.; Lepori, L. J. Solution Chem. 1981, 10, 563-595.
13. Privalov, P. L.; Makhatadze, G. I. J. Mol. Biol. 1993, 232, 660-679.
14. Makhatadze, G. I.; Privalov, P. L. J. Mol. Biol. 1993, 232, 639-659.
15. Chakrabartty, A.; Kortemme, T.; Baldwin, R. L. Protein Sci. 1994, 3, 843-852.
16. Yun, R. H.; Hermans, J. Protein Eng. 1991, 4, 761-766.
17. Stites, W. E.; Pranata, J. Proteins 1995, 22, 132-140.
18. Yang, A..; Honig, B. J. Mol. Biol. 1995, 252, 351-365.
19. Scholtz, J. M.; Marqusee, S.; Baldwin, R. L.; York, E. J.; Stewart, J. M.; Santoro, M.; Bolen, D. W. Proc. Natl. Acad. Sci. U.S.A. 1991, 88, 2854-2858.
20. O'Neil, K. T.; DeGrado, W. F. Science 1990, 250, 646-651.
21. Lyu, P. C.; Liff, M. I.; Marky, L. A.; Kallenbach, N. R. Science 1990, 250, 669-673.
22. Avbelj, F.; Moult, J. Biochemistry 1995, 34, 755-764.
23. Lyu, P. C.; Sherman, J. C.; Chen, A.; Kallenbach, N. R. Proc. Natl. Acad. Sci. U.S.A. 1991, 88, 5317-5320.
24. Padmanabhan, S.; Marqusee, S.; Ridgeway, T.; Laue, T. M.; Baldwin, R. L. Nature 1990, 344, 268-270.
25. Wójcik, J.; Altmann, K.-H.; Scheraga, H. A. Biopolymers 1990, 30, 121-134.
26. IUPAC-IUB Commission on Biochemical Nomenclature J. Mol. Biol. 1970, 52, 1-17.
27. Richardson, J. S.; Richardson, D. C. In Prediction of Protein Structure and the Principles of Protein Conformation; Fasman, G., Ed.; Plenum Press: New York, 1988; pp 1-98.