A protein having similarity with methylmalonyl-CoA mutase is required for the assimilation of methanol and ethanol by Methylobacterium extorquens AM1

Microbiology

Volumn 142, Issue 3, 1996, Pages 675-684

  Smith, Loraine M ^a,b   Meijer, Wim G ^b   Dijkhuizen, Lubbert ^b   Goodwin, Pat M ^a,c  

^a School of Cell and Molecular Biology   (United Kingdom)

^b UNIVERSITY OF GRONINGEN   (Netherlands)

^c WELLCOME TRUST SANGER INSTITUTE   (United Kingdom)

Author keywords

C1 assimilation; Methanol; Methylobacterium; Mutase; Serine pathway

Indexed keywords

ALCOHOL; BACTERIAL DNA; BACTERIAL PROTEIN; CYANOCOBALAMIN; METHANOL; METHYLMALONYL COENZYME A MUTASE;

ARTICLE; BACTERIAL METABOLISM; GENE MUTATION; GENETIC CONSERVATION; METHYLOBACTERIUM; NONHUMAN; PRIORITY JOURNAL; SEQUENCE HOMOLOGY;

BACTERIA (MICROORGANISMS); METHYLOBACTERIUM; METHYLOBACTERIUM EXTORQUENS;

EID: 0029864330     PISSN: 13500872     EISSN: None     Source Type: Journal    
DOI: 10.1099/13500872-142-3-675     Document Type: Article

References (53)

1. Adler, H. I., Fisher, W. D., Cohen, A. & Hardigree, A. A. (1967). Minature Escherichia coli cells deficient in DNA. Proc Natl Acad Sci USA 57, 321-326.
2. Allen, L. N. & Hanson, R. S. (1985). Construction of broad host range cosmid cloning vectors: identification of genes necessary for growth of Methylobacterium organophilum on methanol. J Bacteriol 161, 955-962.
3. Altschul, S. F., Gish, W., Miller, W., Myers, E. W. & Lipman, D. J. (1990). Basic local alignment search tool. J Mol Biol 215, 403-410.
4. Anthony, C. (1982). The Biochemistry of Methylotrophs. London: Academic Press.
5. Bellion, E. & Hersh, L B. (1972). Methylamine metabolism in a Pseudomonas species. Arch Biochem Biophys 153, 368-374.
6. Birch, A., Leiser, A. & Robinson, J. A. (1993). Cloning, sequencing and expression of the gene encoding methylmalonyl CoA mutase from Streptomyces cinnamonensis. J Bacteriol 175, 3511-3519.
7. Birnboim, H. C. & Doly, J. (1979). A rapid alkaline extraction procedure for screening recombinant plasmid DNA. Nucleic Acids Res 7, 1513-1523.
8. Blackmore, M. A. & Quayle, J. R. (1970). Microbial growth on oxalate by a route not involving glyoxylate carboligase. Biochem J 118, 53-59.
9. Bolbot, J. A. & Anthony, C. (1980a). The metabolism of pyruvate by the facultative methylotroph Pseudomonas AM1. J Gen Microbiol 120, 233-244.
10. Bolbot, J. A. & Anthony, C. (1980b). The metabolism of 1,2-propanediol by the facultative methylotroph Pseudomonas AM1. J Gen Microbiol 120, 245-254.
11. Bullock, W. O., Fernandez, J. M. & Short, J. M. (1987). XL-1 Blue: a high efficiency plasmid transforming recA. Escherichia coli strain with β-galactosidase selection. BioTechniques 5, 376-379.
12. Chistoserdova, L. V. & Lidstrom, M. E. (1994a). Genetics of the serine cycle in Methylobacterium extorquens AM1: cloning, sequence, mutation and physiological effect of glyA, the gene for serine hydroxymethyltransferase. J Bacteriol 176, 6759-6763.
13. 1 assimilation, orf4, mtkA and mtkB. J Bacteriol 176, 7398-7404.
14. Clark-Curtiss, J. E. & Curtiss, E. I. (1983). Analysis of recombinant DNA using Escherichia coli minicells. Methods Enzymol 101, 347-362.
15. Crane, A. M., Jansen, R., Andrews, E. R. & Ledley, F. D. (1992). Cloning and expression of a mutant methylmalonyl CoA mutase with altered cobalamin affinity that causes mut-methylmalonic aciduria. J Clin Invest 89, 385-391.
16. Cronan, J. E. & Rawlings, M. (1992). The gene encoding Escherichia coli acyl carrier protein lies within a cluster of fatty acid biosynthesis genes. J Biol Chem 267, 5751-5754.
17. Dawson, A., Southgate, G. & Goodwin, P. M. (1990). Regulation of methanol and methylamine dehydrogenases in Methylophilus methylotrophus. FEMS Microbiol Lett 68, 93-96.
18. Devereux, J., Haeberli, P. & Smithies, O. (1984). A comprehensive ser of sequence analysis programs for the VAX. Nucleic Acids Res 12, 387-395.
19. 12-dependent enzymes. Curr Opin Struct Biol 4, 919-929.
20. 1 compounds, ethanol and β-hydroxybutyrate. Biochem J 132, 797-801.
21. 2 compounds: the involvement of glycollate in the metabolism of ethanol and of acetate by Pseudomonas AM1. Biochem J 128, 99-106.
22. 1 compounds. Biochem J 128, 107-115.
23. Eggink, G., Engel, H., Meijer, W. G., Otten, J., Kingma, J. & Witholt, B. (1988). Alkane utilisation in Pseudomonas oleovorans. J Biol Chem 263, 13400-13405.
24. Figurski, D. H. & Helinski, D. R. (1979). Replication of an origin containing derivative of plasmid RK2 dependent on a plasmid function provided in trans. Proc Natl Acad Sci USA 76, 1648-1652.
25. Ford, S., Page, M. D. & Anthony, C. (1985). The role of a methanol dehydrogenase modifier protein and aldehyde dehydrogenase in the growth of Pseudomonas AM1 on 1,2-propanediol. J Gen Microbiol 131, 2173-2182.
26. Fulton, G. L., Nunn, D. N. & Lidstrom, M. E. (1984). Molecular cloning of a malyl CoA lyase gene from Pseudomonas sp. strain AM1, a facultative methylotroph. J Bacteriol 160, 718-723.
27. Goodwin, P. M. (1990). Assay of assimilatory enzymes in crude extracts of some serine pathway methylotrophs. Methods Enzymol 188, 361-365.
28. Henikoff, S. (1984). Unidirectional digestion with exonuclease III creates targeted breakpoints for DNA sequencing. Gene 28, 351-359.
29. Jansen, R., Kalousek, F., Fenton, W. A., Rosenberg, L. E. & Ledley, F. D. (1989). Cloning of full length methylmalonyl-CoA mutase from a cDNA library using the polymerase chain reaction. Genomics 4, 198-205.
30. 1 compounds. 6. Oxidation of methanol, formaldehyde and formate by methanol grown Pseudomonas AM1. Biochem J 93, 281-290.
31. Keen, N. T., Tamaki, S., Kobayashi, D. & Trollinger, D. (1988). Improved broad-host-range plasmids for DNA cloning in Gram negative bacteria. Gene 70, 191-197.
32. Knauf, V. C. & Nester, E. W. (1982). Wide host range cloning vectors: a cosmid clone bank of an Agrobacterium Ti plasmid. Plasmid 8, 45-54.
33. 1 Compounds, pp. 211-219. Edited by H. Dalton. London: Heyden & Son.
34. Ledley, F. D., Lumetta, M., Nguyen, P. N., Kohlhouse, J. F. & Allen, R. H. (1988). Molecular cloning of L-methylmalonyl-CoA mutase: gene transfer and analysis of mut cell lines. Proc Natl Acad Sci USA 85, 3518-3521.
35. MacLennan, D. G., Ousby, J. C., Vasey, R. B. & Cotton, N. T. (1971). The influence of dissolved oxygen on Pseudomonas AM1 grown on methanol in continuous culture. J Gen Microbiol 69, 395-404.
36. Marsh, E. N. G. & Holloway, D. E. (1992). Cloning and sequencing of glutamate mutase component S from Clostridium tetanomorphum: homologies with other cobalamin-dependent enzymes. FEBS Lett 310, 167-170.
37. Marsh, E. N., Mckie, N., Davis, N. K. & Leadlay, P. F. (1989). Cloning and structural characterization of the genes coding for adenosylcobalamin-dependent methylmalonyl CoA mutase from Propionibacterium shermanii. Biochem J 260, 345-352.
38. Mishra, A. K. & Tiwari, D. N. (1985). Enhancement of NTG mutagenesis by chloramphenicol in Gloeotrichia ghosei. Mol & Gen Genet 201, 351-352.
39. 1 compounds. 1. Isolation and characterisation of Pseudomonas AM1. Biochem J 81, 465-469.
40. Platt, T. (1986). Transcriptional termination and the regulation of gene expression. Annu Rev Biochem 55, 339-372.
41. Roy, I. & Leadlay, P. F. (1992). Physical map location of the new Escherichia coli gene sbm. J Bacteriol 174, 5763-5764.
42. 1-unit-utilizing bacteria. Biochem J 136, 89-96.
43. Salem, A. R., Wagner, C., Hacking, A. J. & Quayle, J. R. (1973b). The metabolism of lactate and pyruvate by Pseudomonas AM1. J Gen Microbiol 76, 375-388.
44. Salem, A. R., Hacking, A. J. & Quayle, J. R. (1974). Lack of malyl-CoA lyase in a mutant of Pseudomonas AMI. J Gen Microbiol 81, 525-527.
45. Sambrook, J., Fritsch, E. F. & Maniatis, T. (1989). Molecular Cloning: a Laboratory Manual, 2nd edn. Cold Spring Harbor, NY: Cold Spring Harbor Laboratory.
46. Sanger, F., Nicklen, S. & Coulson, A. R. (1977). DNA sequencing with chain-terminating inhibitors. Proc Natl Acad Sci USA 74, 5463-5467.
47. 1 Compounds, pp. 113-117. Edited by R. L. Crawford & R. S. Hanson. Washington, DC: American Society for Microbiology.
48. Simon, R., Priefer, U. & Puhler, A. (1983). A broad host range mobilisation system for in vivo genetic engineering; transposon mutagenesis in Gram negative bacteria. Biotechnology 1, 784-791.
49. Slabas, A. R., Chase, D., Nishida, I., Murata, N., Sidebottom, C., Safford, R., Sheldon, P. S., Kekwick, R. G., Hardie, D. G. & Mackintosh, R. W. (1992). Molecular cloning of higher plant 3-oxoacyl-(acyl carrier protein) reductase. Sequence identities with the nodG gene product of the nitrogen fixing soil bacterium Rhizobium meliloti. Biochem J 283, 321-326.
50. 1 assimilation. J Gen Microbiol 135, 227-235.
51. 1 metabolism in the facultative methylotroph Methylobacterium sp. strain AM1 (Pseudomonas AM1). Arch Microbiol 143, 169-177.
52. Wilkemeyer, M. F., Crane, A. M. & Ledley, F. D. (1990). Primary structure and activity of mouse methylmalonyl CoA mutase. Biochem J 271, 449-455.
53. Zagalak, B., Retey, J. & Sund, H. (1974). Studies on methylmalonyl CoA mutase from Propionibacterium shermanii. Eur J Biochem 44, 529-534.