Rad23 is required for transcription-coupled repair and efficient overall repair in Saccharomyces cerevisiae

Molecular and Cellular Biology

Volumn 16, Issue 5, 1996, Pages 2361-2368

  Mueller, James P ^a   Smerdon, Michael J ^a  

^a WASHINGTON STATE UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

DNA;

ARTICLE; DNA DAMAGE; DNA REPAIR; FUNGAL GENETICS; FUNGUS MUTANT; GENETIC TRANSCRIPTION; GENOME; NONHUMAN; PLASMID; PRIORITY JOURNAL; SACCHAROMYCES CEREVISIAE; ULTRAVIOLET RADIATION;

FUNGI; SACCHAROMYCES CEREVISIAE;

EID: 0029864301     PISSN: 02707306     EISSN: None     Source Type: Journal    
DOI: 10.1128/MCB.16.5.2361     Document Type: Article

References (48)

1. Ausubel, F. M., R. Brent, R. E. Kingston, D. D. Moore, J. G. Seidman, J. A. Smith, and K. Struhl. 1989. Current protocols in molecular biology. John Wiley & Sons, New York
2. Bedoyan, J., R. Gupta, F. Thoma, and M. J. Smerdon. 1992. Transcription, nucleosome stability, and DNA repair in a yeast minichromosome. J Biol. Chem 267:5996-6005.
3. Bohr, V. A., C. A. Smith, D. S. Okumoto, and P. C. Hanawalt. 1985. DNA repair in an active gene: removal of pyrimidine dimers from the DHFR gene of CHO cells is much more efficient than in the genome overall. Cell 40: 359-369.
4. Christians, F. C., and P. C. Hanawalt. 1992. Inhibition of transcription and strand-specific DNA repair by α-amanitin in Chinese hamster ovary cells. Mutat. Res. 274:93-101
5. 3-tubulin gene in a Drosophila embryonic cell line Kc. Mutat. Res 293:11-20.
6. Dodson, M. L., and R. S. Lloyd. 1989. Structure-function studies of the T4 endonuclease V repair enzyme. Mutat. Res. 218:49-65
7. Friedberg, E. C., G. C. Walker, and W. Siede. 1995. DNA repair and mutagenesis. ASM Press, Washington, D.C.
8. Fritz, L. K., and M. J. Smerdon. 1995. Repair of UV damage in actively transcribed ribosomal genes. Biochemistry 34:13117-13124.
9. George, D., and E. M. Witkin. 1974. Slow excision repair in an mfd mutant of Escherichia coli B/r. Mol. Gen. Genet 133:382-391
10. Guzder, S. N., V. Bailly, P. Sung, L. Prakash, and S. Prakash. 1995 Yeast DNA repair protein RAD23 promotes complex formation between transcription factor TFIIH and DNA damage recognition factor RAD14. J. Biol. Chem. 270:8385-8388.
11. Guzder, S. N., Y. Habraken, P. Sung, L. Prakash, and S. Prakash. 1995. Reconstitution of yeast nucleotide excision repair with purified Rad proteins, replication protein A and transcription factor TFIIH. J Biol. Chem. 270: 12973-12976
12. Guzder, S. N., P. Sung, L. Prakash, and S. Prakash. 1993. Yeast DNA-repair gene RAD14 encodes a zinc metalloprotein with affinity for ultraviolet-damaged DNA. Proc. Natl Acad. Sci. USA 90:5433-5437.
13. Hanawalt, P. C. 1995. DNA repair comes of age. Mutat. Res. 336:101-113.
14. Haynes, R. H., and B. A. Kunz. 1981. DNA repair and mutagenesis in yeast, p. 371-414. In J. N Strathern, E W. Jones, and J. R Broach (ed), The molecular biology of the yeast Saccharomyces: life cycle and inheritance. Cold Spring Harbor Laboratory, Cold Spring Harbor, N.Y.
15. Henning, K. A., C. Peterson, R. Legerski, and E. C. Friedberg. 1994 Cloning the Drosophila homolog of the xeroderma pigmentosum complementation group C gene reveals homology between the predicted human and Drosophila polypeptides and that encoded by the yeast RAD4 gene. Nucleic Acids Res. 22:257-261.
16. Herefored, L., and M. Rosbash. 1977. Number and distribution of polyadenylated RNA sequences in yeast. Cell 10:453-462.
17. Jentsch, S. 1992. The ubiquitin-conjugation system. Annu. Rev. Genet. 26: 179-207.
18. Kantor, G. J., L. S. Barsalou, and P. C. Hanawalt. 1990. Selective repair of specific chromatin domains in UV-irradiated cells from xeroderma pigmentosum complementation group C. Mutat. Res. 235:171-180.
19. Kunala, S., and D. E. Brash. 1995. Intergenic domains of strand-specific repair in Escherichia coli. J. Mol. Biol. 246:264-272.
20. Leadon, S. A., and D. A. Lawrence. 1991. Preferential repair of DNA damage on the transcribed strand of the human metallothionein genes requires RNA polymerase II. Mutat Res 255:67-78.
21. Legerski, R., and C. Peterson. 1992. Expression cloning of a human DNA repair gene involved in xeroderma pigmentosum group C. Nature (London) 359:70-73
22. Masutani, C., K. Sugasawa, J. Yanagisawa, T. Sonoyama, M. Ui, T. Enomoto, K. Takio, K. Tanaka, P. J. van der Spek, D. Bootsma, J. H. J. Hoeijmakers, and F. Hanaoka. 1994 Purification and cloning of a nucleotide excision repair complex involving the xeroderma pigmentosum group C protein and a human homologue of yeast RAD23. EMBO J. 13:1831-1843.
23. Mauldin, S. K., T. M. Freeland, and R. A. Deering. 1994. Differential repair of UV damage in a developmentally regulated gene of Dictyostelium discoideum. Mutat. Res 314:187-198.
24. McCready, S. J., J. M. Boyce, and B. S. Cox. 1987. Excision repair in the yeast, S cerevisiae. J. Cell Sci. Suppl. 6:25-38.
25. Miller, R. D., L. Prakash, and S. Prakash. 1982. Defective excision of pyrimidine dimers and interstrand DNA crosslinks in rad7 and rad23 mutants of S. cerevisiae. Mol. Gen. Genet. 188:235-239.
26. Mueller, J. P., and M. J. Smerdon. 1995. Repair of plasmid and genomic DNA in a rad7Δ mutant of yeast. Nucleic Acids Res. 23:3457-3464.
27. Murad, A. O., J. de Cock, D. W. Brown, and M. J. Smerdon. 1995. Variations in transcription-repair coupling in mouse cells. J. Biol. Chem. 270:3949-3957.
28. Oller, A. R., I. J. Fijalkowska, R. L. Dunn, and R. M. Schaaper. 1992. Transcription-repair coupling determines the strandedness of ultraviolet mutagenesis in Escherichia coli. Proc. Natl. Acad. Sci. USA 89:11036-11040.
29. Pérez-Ortín, J. E., E. Matallana, and L. Franco. 1989. Chromatin structure of yeast genes. Yeast 5:219-238.
30. Prakash, L. Personal communication.
31. Prakash, S., P. Sung, and L. Prakash. 1993. DNA repair genes and proteins of Saccharomyces cerevisiae. Annu. Rev. Genet 27:33-70.
32. Reynolds, R. J., and E. C. Friedberg. 1981. Molecular mechanisms of pyrimidine dimer excision in Saccharomyces cerevisiae: incision of ultraviolet-irradiated deoxyribonucleic acid in vivo. J. Bacteriol. 146:692-704.
33. Selby, C. P., and A. Sancar. 1990. Transcription preferentially inhibits nucleotide excision repair of the template DNA strand in vitro. J. Biol. Chem. 265:21330-21336.
34. Selby, C. P., and A. Sancar. 1993. Molecular mechanism of transcription-repair coupling. Science 260:53-58.
35. Selby, C. P., and A. Sancar. 1994. Mechanisms of transcription-repair coupling and mutation frequency decline. Microbiol. Rev. 58:317-329.
36. Smerdon, M. J., J. Bedoyan, and F. Thoma. 1990. DNA repair in a small yeast plasmid folded into chromatin. Nucleic Acids Res. 18:2045-2051.
37. Smerdon, M. J., R. Gupta, and A. O. Murad. 1993. DNA repair in transcriptionally active chromatin, p. 258-273. In V. A Bohr, K. Wassermann, and K H. Kraemer (ed.), DNA repair mechanisms. Munksgaard, Copenhagen.
38. Smerdon, M. J., and F. Thoma. 1990. Site-specific DNA repair at the nucleosome level in a yeast minichromosome. Cell 61:675-684.
39. Sweder, K. S., and P. C. Hanawalt. 1992. Preferential repair of cyclobutane pyrimidine dimers in the transcribed strand of a gene in yeast chromosomes and plasmids is dependent on transcription. Proc. Natl. Acad Sci. USA 89:10696-10700.
40. Sweetser, D., M. Nonet, and R. A. Young. 1987. Prokaryotic and eukaryotic RNA polymerases have homologous core subunits. Proc. Natl Acad. Sci. USA 84:1192-1196.
41. Thoma, F. 1986 Protein-DNA interactions and nuclease-sensitive regions determine nucleosome positions on yeast plasmid chromatin. J Mol. Biol 190:177-190.
42. van Gool, A. J., R. Verhage, S. M. A. Swagemakers, P. van de Putte, J. Brouwer, C. Troelstra, D. Bootsma, and J. H. J. Hoeijmakers. 1994 RAD26, the functional S. cerevisiae homolog of the Cockayne syndrome B gene ERCC6. EMBO J 13:5361-5369.
43. Venema, J., A. van Hoffen, V. Karcagi, A. T. Natarajan, A. A. van Zeeland, and L. H. F. Mullenders. 1991. Xeroderma pigmentosum complementation group C cells remove pyrimidine dimers selectively from the transcribed strand of active genes. Mol. Cell. Biol. 11:4128-4134.
44. Venema, J., A. van Hoffen, A. T. Natarajan, A. A. van Zeeland, and L. H. F. Mullenders. 1990. The residual repair capacity of xeroderma pigmentosum complementation group C fibroblasts is highly specific for transcriptionally active DNA. Nucleic Acids Res. 18:443-448.
45. Verhage, R., A.-M. Zeeman, N. de Groot, F. Gleig, D. D. Bang, P. van de Putte, and J. Brouwer. 1994. The RAD7 and RAD16 genes, which are essential for pyrimidine dimer removal from the silent mating type loci, are also required for repair of the non transcribed strand of an active gene in Saccharomyces cerevisiae. Mol. Cell. Biol. 14:6135-6142.
46. Waters, R., R. Zhang, and N. J. Jones. 1993. Inducible removal of UV-induced pyrimidine dimers from transcriptionally active and inactive genes of Saccharomyces cerevisiae. Mol. Gen. Genet. 239:28-32.
47. Watkins, J. F., P. Sung, L. Prakash, and S. Prakash. 1993. The Saccharomyces cerevisiae DNA repair gene RAD23 encodes a nuclear protein containing a ubiquitin-like domain required for biological function. Mol. Cell. Biol. 13:7757-7765.
48. Wilcox, D. R., and L. Prakash. 1981. Incision and postincision steps of pyrimidine dimer removal in excision-defective mutants of Saccharomyces cerevisiae. J. Bacteriol. 148:618-623.