Phylogenetic evidence for a diversification of Pseudomonas syringae pv. pisi Race 4 strains into two distinct lineages

Phytopathology

Volumn 86, Issue 10, 1996, Pages 1051-1056

  Cournoyer, B ^a,b   Arnold, D ^a   Jackson, R ^a   Vivian, A ^a  

^a UNIVERSITY OF THE WEST OF ENGLAND   (United Kingdom)

^b UNIVERSITÉ CLERMONT AUVERGNE   (France)

Author keywords

[No Author keywords available]

Indexed keywords

EID: 0029862442     PISSN: 0031949X     EISSN: None     Source Type: Journal    
DOI: 10.1094/Phyto-86-1051     Document Type: Article

References (29)

1. Altschul, S. F., Gish, W., Miller, W., Myers, E. W., and Lipman, D J. 1990. Basic local alignment search tool. J. Mol. Biol. 215:403-410.
2. Bevan, J. R., Taylor, J. D., Crute, I. R., Hunter, P. J, and Vivian, A. 1995. Genetic analysis of resistance in Pisum sativum cultivars to specific races of Pseudomonas syringae pathovar pisi. Plant Pathol. 44:98-108
3. Cournoyer, B., Sharp, J. D., Astuto, A., Gibbon, M. J, Taylor, J. D., and Vivian, A. 1995. Molecular characterization of the Pseudomonas syringae pv. pisi plasmid-borne avirulence gene avrPptB which matches the R3 resistance locus in pea. Mol. Plant-Microbe Interact. 8:700-708
4. Felsenstein, J. 1988. Phytogenies from molecular sequences: Inference and reliability. Annu. Rev. Genet. 22:521-565.
5. Hanahan, D. 1983. Studies on transformation of Escherichia coli with plasmids. J. Mol. Biol. 166:557-580.
6. Hedges, S. B. 1992. The number of replications for accurate estimation of the bootstrap P value in phylogenetic studies. Mol. Biol. Evol. 9:366-369.
7. Higgins, D. G., and Sharp, P. M. 1988. Clustal: A package for performing multiple alignment on a microcomputer. Gene 73:237-244.
8. Pss secretion that are arranged colinearly with Yersinia ysc homologs. Mol. Plant-Microbe Interact. 8:733-746.
9. Jones, D. S., and Schofield, J. P. 1990. A rapid method for isolating high quality plasmid DNA suitable for DNA sequencing. Nucleic Acids Res. 18:7463-7464.
10. Kimura, M. 1980. A simple method for estimating evolutionary rate of base substitutions through comparative studies of nucleotide sequences. J. Mol. Evol. 16:111-120.
11. Kimura, M. 1983. The neutral theory of molecular evolution. Cambridge University Press, Cambridge.
12. King, E. O., Ward, M. K., and Raney, D. E. 1954. Two simple media for the demonstration of pyocyanin and fluorescin. J. Lab. Clin. Med. 44:301-307.
13. Klement, Z. 1963. Rapid detection of pathogenicity of phytopathogenic pseudomonads Nature 199:299-300.
14. Liang, L. Z., and Jones, A. L. 1995. Organization of the hrp gene cluster and nucleotide sequence of the hrpL gene from Pseudomonas syringae pv. morsprunorum. Phytopathology 85:118-123.
15. Mansfield, J., Jenner, C., Hockenhull, R., Bennett, M. A., and Stewart, R. 1994. Characterization of avrPphE, a gene for cultivar-specific avirulence from Pseudomonas syringae pv. phaseolicola which is physically linked to hrpY, a new hrp gene identified in the halo-blight bacterium. Mol. Plant-Microbe Interact. 7:726-739.
16. Miller, J. H. 1972. Experiments in Molecular Genetics. Cold Spring Harbor Laboratory, Cold Spring Harbor, NY.
17. Moulton, P. J., Vivian, A, Hunter, P. J., and Taylor, J D. 1993. Changes in cultivar-specificity toward pea can result from transfer of plasmid RP4 and other incompatibility group P1 replicons to Pseudomonas syringae pv. pist. J. Gen. Microbiol. 139:3149-3155
18. Mur, L. A. J. 1991. The molecular genetics of race 2 specificity in Pseudomonas syringae pathovar pisi. Ph D. thesis. Council for National Academic Awards, Bristol Polytechnic, United Kingdom.
19. Nazaret, N., Coumoyer, B., Normand, P., and Simonet, P. 1991. Phylogenetic relationships among Frankia genomic species determined by use of amplified 16S rDNA sequences. J. Bacteriol. 173:4072-4078.
20. Norrander, J., Kempe, T, and Messing, J. 1983. Construction of improved M13 vectors using oligodeoxy nucleotide directed mutagenesis. Gene 26:101-106
21. Palleroni, N J 1984. Negative aerobic rods and cocci. Family I Pseudomonadaceae. Genus I. Pseudomonas. Pages 141-199 in: Bergey's Manual of Systematic Bacteriology. N. R. Krieg and J. G. Holt, eds. Williams and Wilkins, Baltimore.
22. Palleroni, N. J., Ballard, R. W., Ralston, E, and Doudoroff, M. 1972. Deoxyribonucleic acid homologies among some Pseudomonas species. J. Bacteriol. 110:1-11.
23. Pecknold, P. C, and Grogan, R. G. 1973. Deoxyribonucleic acid homology groups among phytopathogenic Pseudomonas species. Int. J. Syst Bacteriol. 23:111-121.
24. Saitou, N , and Nei, M. 1987. The neighbor-joining method: A new method for reconstructing phylogenetic trees. Mol. Biol. Evol 4:406-425.
25. Sambrook, J., Fritsch, E. F., and Maniatis, T. 1989. Molecular Cloning: A Laboratory Manual. 2nd ed. Cold Spring Harbor Laboratory, Cold Spring Harbor, NY.
26. Short, J. M., Fernandez, J. M., Jorge, J. A., and Huse, W. D. 1988 dZAP: A bacteriophage λ expression vector with in vivo excision properties Nucleic Acids Res. 16:75-83.
27. Simonet, P., Grosjean, M.-C., Misra, A. K., Nazaret, S , Cournoyer, B., and Normand, P. 1991. Frankia genus-specific characterization by polymerase chain reaction. Appl. Environ. Microbiol. 57:3278-3286.
28. Taylor, J. D., Bevan, J. R., Crute, I. R., Reader, S. L. 1989. Genetic relationship between races of Pseudomonas syringae pv. pisi and cultivars of Pisum sativum Plant Pathol. 38:364-375.
29. Xiao, Y., Heu, S., Yi, J., and Hutcheson, S. W. 1994. Identification of a putative alternate sigma factor and characterization of a multicomponent regulatory cascade controlling the expression of Pseudomonas syringae pv. syringae Pss61 hrp and hrmA genes. J. Bacteriol. 176:1025-1036.