The nucleotide sequence of RNA1 and RNA2 of olive latent virus 2 and its relationships in the family Bromoviridae

Journal of General Virology

Volumn 77, Issue 10, 1996, Pages 2637-2644

  Grieco, F ^a   Dell'Orco, M ^a   Martelli, G P ^a  

^a CNR   (Italy)

Author keywords

[No Author keywords available]

Indexed keywords

HELICASE; METHYLTRANSFERASE; RNA POLYMERASE II; VIRUS RNA;

ARTICLE; MOLECULAR WEIGHT; MOSAIC VIRUS; NONHUMAN; NUCLEOTIDE SEQUENCE; OPEN READING FRAME; PLANT VIRUS; PRIORITY JOURNAL; RNA REPLICATION; RNA TRANSLATION; SEQUENCE HOMOLOGY; VIRUS GENOME; VIRUS REPLICATION;

BROMOVIRIDAE; OLIVE LATENT VIRUS 2;

EID: 0029860881     PISSN: 00221317     EISSN: None     Source Type: Journal    
DOI: 10.1099/0022-1317-77-10-2637     Document Type: Article

References (32)

1. Agranovsky, A. A., Dolja, V. V. & Atabekov, J. G. (1982). Structure of the 3′ extremity of barley stripe mosaic virus RNA: evidence for internal poly(A) and a 3′-terminal tRNA-like structure. Virology 106, 51-59.
2. Ahlquist, P. & Janda, M. (1984). cDNA cloning and in vitro transcription of the complete brome mosaic virus genome. Molecular and Cellular Biology 4, 2876-2882.
3. Ahlquist, P., Luckow, V. & Kaesberg, P. (1981). Complete nucleotide sequence of brome mosaic virus RNA3. Journal of Molecular Biology 153, 23-28.
4. Altschul, S. F., Gish, W., Miller, W., Myers, E. W. & Lipman, D. J. (1990). Basic local alignment search tool. Journal of Molecular Biology 215, 403-410.
5. Anonymous (1994). Program Manual for the Wisconsin Package, version 8, September 1994. Genetics Computer Group, Madison, Wis., USA.
6. Argos, P. (1988). A sequence motif in many polymerases. Nucleic Acids Research 16, 9909-9916.
7. Felsenstein, J. (1989). PHYLIP - phylogeny inference package (version 3.5). Cladistics 5, 164-166.
8. Fichot, O. & Girard, M. (1990). An improved method for sequencing of RNA templates. Nucleic Acids Research 18, 6162.
9. Gallie, D. R., Sleat, D. E., Watts, J. W., Turner, P. C. & Wilson, T. M. A. (1987). A comparison of eucaryotic viral 5′-leader sequences as enhancers of mRNA expression in vivo. Nucleic Acids Research 15, 8693-8711.
10. Gorbalenya, A. E., Blonov, V. M., Donchenko, A. P. & Koonin, E. V. (1989). An NTP-binding motif is the most conserved sequence in a highly diverged monophyletic group of proteins involved in positive strand RNA viral replication. Journal of Molecular Evolution 28, 256-268.
11. Grieco, F., Burgyan, J. & Russo, M. (1989). Nucleotide sequence of the 3′-terminal region of cymbidium ringspot virus RNA. Journal of General Virology 70, 2533-2538.
12. Grieco, F., Martelli, G. P., Savino, V. & Piazzolla, P. (1992). Properties of olive latent virus 2. Rivista di Patologia Vegetale 2, 125-136.
13. Grieco, F., Martelli, G. P. & Savino, V. (1995). The nucleotide sequence of RNA3 and RNA4 of olive virus 2. Journal of General Virology 76, 929-937.
14. Hagenbuchle, O., Santer, M., Steitz, J. A. & Mans, R. J. (1978). Conservation of the primary structure at the 3′ end of 18S rRNA from eucaryotic cells. Cell 13, 551-563.
15. Hattori, M. & Sakaki, Y. (1986). Dideoxy sequencing method using denatured plasmid templates. Analytical Biochemistry 152, 232-238.
16. Houser-Scott, F., Baer, M. L., Liem, K. F., Cai, J. & Gehrke, L. (1994). Nucleotide sequence and structural determinants of specific binding of coat protein or coat protein peptides to the 3′ untranslated region of alfalfa mosaic virus RNA4. Journal of Virology 8, 2194-2205.
17. Koonin, E. V. (1991). The phylogeny of RNA-dependent RNA polymerases of positive-strand RNA viruses. Journal of General Virology 72, 2197-2206.
18. Koonin, E. V. & Dolja, V. V. (1993). Evolution and taxonomy of positive-strand RNA viruses: implications of comparative analysis of amino acid sequence. Critical Reviews in Biochemistry and Molecular Biology 28, 375-430.
19. Koper-Zwarthoff, E. C. & Bol, J. F. (1980). Nucleotide sequence of the putative recognition site for coat protein in the RNAs of alfalfa mosaic virus and tobacco streak virus. Nucleic Acids Research 8, 3307-3318.
20. Langereis, K., Mugnier, M., Cornelissen, B. J. C., Pinck, L. & Bol, J. F. (1986). Variable repeats and poly(A)-stretches in the leader sequences of alfalfa mosaic virus RNA3. Virology 154, 409-414.
21. Lutcke, H. A., Chow, K. C., Mickel, F. S., Moss, K. A., Kern, H. F. & Scheele, G. A. (1987). Selection of AUG initiation codons differs in plant and animals. EMBO Journal 6, 43-48.
22. Marck, C. (1988). "DNA Strider": a "C" programme for the fast analysis of DNA and protein sequences on the Apple Macintosh family computers. Nucleic Acids Research 16, 1829-1836.
23. Mi, S., Durbin, R., Huang, H. V., Rice, C. M. & Stollar, V. (1989). Association of sindbis virus RNA methyltransferase activity with the non structural protein nsP1. Virology 170, 52-62.
24. Sambrook, J., Fritsch, E. F. & Maniatis, T. (1989). Molecular Cloning: A Laboratory Manual. New York: Cold Spring Harbor Laboratory.
25. Sanchez-Navarro, J. A. & Pallas, V. (1994). Nucleotide sequence of apple mosaic ilarvirus RNA4. Journal of General Virology 75, 1441-1445.
26. Savino, V., Piazzolla, P., Di Franco, A. & Martelli G. P. (1984). Olive latent virus 2, a newly recognized virus with different shaped particles. Proceedings of the 5th Congress of the Mediterranean Phytopathological Union, Cairo 1984, pp. 24-26.
27. Scott, S. W. & Ge, X. (1995). The nucleotide sequence of citrus leaf rugose virus RNA1. Journal of General Virology 76, 3233-3238.
28. Sehnke, P. C., Mason, A. M., Hood, S. J., Lister, R. M. & Johnson, J. E. (1989). A "zinc-finger"-type binding domain in tobacco streak virus coat protein. Virology 168, 48-56.
29. Symons, R. H. (1985). Viral genome structure. In The Plant Viruses, vol. 1, Polyhedral Virions with Tripartite Genomes, pp. 57-81. Edited by R. I. B. Francki. New York & London: Plenum Press.
30. Ziegler, A., Mayo, M. A. & Murant, A. F. (1993). Proposed classification of the bipartite-genomed raspberry bushy dwarf idaeovirus with tripartite-genomed viruses in the family Bromoviridae. Archives of Virology 131, 483-488.
31. Zuker, M. (1989). On finding all suboptimal foldings of an RNA molecule. Science 244, 48-52.
32. Zuidema, D. & Jaspars, E. M. J. (1984). Comparative investigations on the coat protein binding sites of the genomic RNAs of alfalfa mosaic and tobacco streak viruses. Virology 135, 43-52.