Construction of chromosome-specific DNA libraries covering the whole genome of field bean (Vicia faba L.)

Chromosome Research

Volumn 4, Issue 7, 1996, Pages 531-539

  Macas, J ^a   Gualberti, G ^a,d   Nouzova M ^a   Samec, P ^a   Lucretti, S ^b   Dolezel J ^c  

^a INSTITUTE OF PLANT MOLECULAR BIOLOGY   (Czech Republic)

^b ENEA   (Italy)

^c DE MONTFORT UNIVERSITY   (United Kingdom)

^d SAPIENZA UNIVERSITY OF ROME   (Italy)

Author keywords

Chromosome flow sorting; Chromosome specific; Degenerate oligonucleotide primed polymerase chain reaction; DNA libraries; Genome mapping; Vicia faba

Indexed keywords

MICROSATELLITE DNA; RECOMBINANT DNA;

ARTICLE; BEAN; DNA LIBRARY; GENE AMPLIFICATION; GENE MAPPING; GENE SEQUENCE; GENOME; KARYOTYPE; MOLECULAR CLONING; NONHUMAN; PLANT CELL; PLASMID; POLYMERASE CHAIN REACTION; PRIORITY JOURNAL;

PHASEOLUS (ANGIOSPERM); VICIA FABA;

EID: 0029860735     PISSN: 09673849     EISSN: None     Source Type: Journal    
DOI: 10.1007/BF02261781     Document Type: Article

References (31)

1. Arumuganathan K, Martin GB, Telenius H, Tanksley SD, Earle ED (1994) Chromosome 2-specific DNA clones from flow-sorted chromosomes of tomato. Mol Gen Genet 242: 551-558.
2. Ausbel FM, Brent R, Kingston RE et al. (1991) Current Protocols in Molecular Biology. New York: John Wiley & Sons.
3. Bennett MD, Leiten I (1995) Nuclear DNA amounts in angiosperms. Ann Bot 76: 113-176.
4. Breneman JW, Ramsey MJ, Lee DA, Eveleth GG, Minkler JL, Tucker JD (1993) The development of chromosome-specific composite DNA probes for the mouse and their application to chromosome painting. Chromosoma 102: 591-598.
5. Crowe JS, Cooper HJ, Smith MA, Sims MJ, Parker D, Gewert D (1991) Improved cloning efficiency of polymerase chain reaction (PCR) products after proteinase K digestion. Nucleic Acids Res 19: 184.
6. Doležel J, Lucretti S (1995) High-resolution flow karyotyping and chromosome sorting in Vicia faba lines with standard and reconstructed karyotypes. Theor Appl Genet 90: 797-802.
7. Doležel J, Binarová P, Lucretti S (1989) Analysis of nuclear DNA content in plant cells by flow cytometry. Biol Plant 31: 113-120.
8. Doležel J, Sgorbati S, Lucretti S (1992a) Comparison of three DNA fluorochromes for flow cytometric estimation of nuclear DNA content in plants. Physiol Plant 85: 625-631.
9. Doležel J, Čihalíková J, Lucretti S (1992b) A high-yield procedure for isolation of metaphase chromosomes from root tips of Vicia faba L. Planta 188: 93-98.
10. Doležel J, Lucretti S, Schubert I (1994) Plant chromosome analysis and sorting by flow cytometry. Crit Rev Plant Sci 13: 275-309.
11. Doležel J, Lucretti S, Macas J. (1995) Flow cytometric analysis and sorting of plant chromosomes. In: Brandham PE, Bennett MD, eds. Kew Chromosome Conference IV. Kew: Royal Botanic Gardens, pp 185-200.
12. Fuchs J, Schubert I (1995) Localization of seed protein genes on metaphase chromosomes of Vicia faba via fluorescence in situ hybridization. Chrom Res 3: 94-100.
13. Gray JW, Cram LS. (1990) Flow karyotyping and chromosome sorting. In: Melamed MR, Lindmo T, Mendelsohn ML, eds. Flow Cytometry and Sorting. 2nd edn, New York: WileyLiss, pp 503-529.
14. Guan XY, Meltzer PS, Trent JM (1994) Rapid generation of whole chromosome painting probes (WCPs) by chromosome microdissection. Genomics 22: 101-107.
15. Hoebee B, Destoppelaar JM, Suijkerbuijk RF, Monard S (1994) Isolation of rat chromosome-specific paint probes by bivariate flow sorting followed by degenerate oligonucleotide primed PCR. Cytogenet Cell Genet 66: 277-282.
16. Jung V, Pestka SB, Pestka S (1993) Cloning of polymerase chain reaction-generated DNA containing terminal restriction endonuclease recognition sites. In: Wu R, ed. Methods in Enzymology. San Diego: Academic Press, pp 357-362.
17. Langford CF, Telenius H, Carter NP, Miller NGA, Tucker EM (1992) Chromosome painting using chromosome-specific probes from flow-sorted pig chromosomes. Cytogenet Cell Genet 61: 221-223.
18. Lucretti S, Doležel J, Schubert I, Fuchs J (1993) Flow karyotyping and sorting of Vicia faba chromosomes. Theor Appl Genet 85: 665-672.
19. Macas J, Doležel J, Lucretti S et al. (1993a) Localization of seed protein genes on flow-sorted field bean chromosomes. Chrom Res 1: 107-115.
20. Macas J, Weschke W, Baumlein H et al. (1993b) Localization of vicilin genes via polymerase chain reaction on microisolated field bean chromosomes. Plant J 3: 883-886.
21. McCormick MK, Buckler A, Bruno W et al. (1993) Construction and characterization of a YAC library with a low frequency of chimeric clones from flow-sorted human chromosome 9. Genomics 18: 553-558.
22. Pich U, Houben A, Fuchs J, Meister A, Schubert I (1994) Utility of DNA amplified by degenerate oligonucleotideprimed PCR (DOP-PCR) from the total genome and defined chromosomal regions of field bean. Mol Gen Genet 243: 173-177.
23. Riess O, Siedlaczck I, Kredtke S, Melmer G, Epplen JT, Deaven LL (1994) Characterization of a human chromosome-4 flow-sorted cosmid library. Cytogenet Cell Genet 65: 238-242.
24. Riquet J, Milan D, Woloszyn N et al. (1995) A linkage map with microsatellites isolated from swine flow-sorted chromosome 11. Mammalian Genome 6: 623-628.
25. Sanger F, Nicklen D, Coulson AR (1977) DNA sequencing with chain terminating inhibitors. Proc Natl Acad Sci USA 74: 5463-5467.
26. Schubert I, Rieger R, Michaelis A (1986) Structural and numerical manipulation of the Vicia faba karyotype: results and perspectives. Biol Zentbl 105: 9-17.
27. Telenius H, Carter NP, Bebb CE, Nordenskjold M, Ponder BAJ, Tunnacliffe A (1992) Degenerate oligonucleotideprimed PCR: general amplification of target DNA by a single degenerate primer. Genomics 13: 718-725.
28. Torres AM, Weeden NF, Martin A (1993) Linkage among isozyme, RFLP and RAPD markers in Vicia faba. Theor Appl Genet 85: 937-945.
29. Van Dilla MA, Deaven LL (1990) Construction of gene libraries for each human chromosome. Cytometry 11: 208-218.
30. Wang ML, Leitch AR, Schwarzacher T, Heslop-Harrison JS, Moore G (1992) Construction of a chromosome-enriched HpaII library from flow-sorted wheat chromosomes. Nucleic Acids Res 20: 1897-1901.
31. Yakura K, Tanifuji S (1983) Molecular cloning and restriction analysis of EcoRI-fragments of Vicia faba rDNA. Plant Cell Physiol 24: 1327-1330.