Mutations in an Abf1p binding site in the promoter of yeast RPO26 shift the transcription start sites and reduce the level of RPO26 mRNA

Yeast

Volumn 12, Issue 13, 1996, Pages 1339-1350

  Nouraini, Shahrzad ^a,b,d   Hu, Jim ^a   McBroom, Linda D B ^b,e   Friesen, James D ^a,b,c,d  

^a HOSPITAL FOR SICK CHILDREN   (Canada)

^b UNIVERSITY OF TORONTO   (Canada)

^c C H Best Institute   (Canada)

^d UNIVERSITY OF TORONTO   (Canada)

^e ROYAL VICTORIA HOSPITAL   (Canada)

Author keywords

ABF1; RPO26; Transcription initiation

Indexed keywords

DNA BINDING PROTEIN; MESSENGER RNA;

ARTICLE; CONTROLLED STUDY; DNA BINDING; GENE MUTATION; NONHUMAN; PRIORITY JOURNAL; PROMOTER REGION; SACCHAROMYCES CEREVISIAE; TRANSCRIPTION INITIATION; TRANSCRIPTION REGULATION;

ALLELES; BASE SEQUENCE; BINDING SITES; DNA-BINDING PROTEINS; DNA-DIRECTED RNA POLYMERASES; GENE EXPRESSION REGULATION, FUNGAL; MOLECULAR SEQUENCE DATA; MUTAGENESIS; NUCLEIC ACID HYBRIDIZATION; PLASMIDS; POLYMERASE CHAIN REACTION; PROMOTER REGIONS (GENETICS); RESTRICTION MAPPING; RNA, MESSENGER; SACCHAROMYCES CEREVISIAE; SACCHAROMYCES CEREVISIAE PROTEINS; TRANS-ACTIVATION (GENETICS); TRANSCRIPTION FACTORS;

SACCHAROMYCES CEREVISIAE;

EID: 0029845498     PISSN: 0749503X     EISSN: None     Source Type: Journal    
DOI: 10.1002/(SICI)1097-0061(199610)12:13<1339::AID-YEA31>3.0.CO;2-C     Document Type: Article

References (41)

1. Archambault, J. and Friesen, J. D. (1993). Genetics of eukaryotic RNA polymerases I, II, and III. Microbiol. Rev. 57, 511-779.
2. Archambault, J., Jansma, D. B. and Friesen, J. D. (1996). Underproduction of the largest subunit of RNA polymerase II causes temperature sensitivity, slow growth, and inositol auxotrophy in Saccharomyces cerevisiae. Genetics 142, 737-747.
3. Archambault, J., Milne, C. A., Schappert, K. T., Baum, B., Friesen, J. D. and Segall, J. (1992). The deduced sequence of the transcription TFIIIA from Saccharomyces cerevisiae reveals extensive divergence from Xenopus TFIIIA. J. Biol. Chem. 267, 3282-3288.
4. Archambault, J., Schappert, K. J. and Friesen, J. D. (1990). A suppressor of an RNA polymerase II mutation of Saccharomyces cerevisiae encodes a subunit common to RNA polymerases I, II, and III. Mol. Cell. Biol. 10, 6123-6131.
5. Astell, C. R., Ahlstrom-Jonasson, L., Smith, M., Tatchell, K., Nasmyth, K. A. and Hall, B. D. (1981). The sequence of the DNAs coding for the mating-type loci of Saccharomyces cerevisiae. Cell 27, 15-23.
6. Bennetzen, J. L. and Hall, B. D. (1982). The primary structure of the Saccharomyces cerevisiae gene for alcohol dehydrogenase. J. Biol. Chem. 257, 3018-3025.
7. Bonneaud, N., Ozier-Kalogeropoulos, O., Li, G., Labouesse, M., Minvielle-Sebastia, L. and Lacroute, F. (1991). A family of low and high copy replicative, integrative and single-stranded S. cerevisiae/E. coli shuttle vectors. Yeast 7, 609-615.
8. Buchman, A. R. and Kornberg, R. D. (1990). A yeast ARS-binding protein activates transcription synergistically in combination with other weak activating factors. Mol. Cell. Biol. 10, 887-897.
9. De Winde, J. H., Van Leeuwen, H. C. and Grivell, L. A. (1993). The multifunctional regulatory proteins ABF1 and CPF1 are involved in the formation of a nuclease-hypersensitive region in the promoter of the QCR8 gene. Yeast 9, 847-857.
10. Delia Seta, F., Ciafre, S.-A., Marck, C., et al. (1990b). The ABF1 factor is the transcriptional activator of the L2 ribosomal protein genes in Saccharomyces cerevisiae. Mol. Cell. Biol. 10, 2437-2441.
11. Delia Seta, F., Treich, I., Buhler, J.-M. and Sentenac, A. (1990a). ABF1 binding sites in yeast RNA polymerase genes. J. Biol. Chem 265, 15168-15175.
12. Dequard-Chablat, M., Riva, M., Carles, C. and Sentenac, A. (1991). RPC19, the gene for a subunit common to yeast RNA polymerases A (I) and C (III). J. Biol. Chem. 266, 15300-15307.
13. Dhawale, S. S. and Lane, A. C. (1993). Compilation of sequence-specific DNA-binding proteins implicated in transcriptional control in fungi. Nucl. Acids Res. 21, 5537-5546.
14. Drapkin, R., Merino, A. and Reinberg, D. (1993). Regulation of RNAPII transcription. Curr. Opin. Cell Biol. 5, 469-476.
15. Gonçalves, P. M., Griffioen, G., Minnee, R., et al. (1995). Transcription activation of yeast ribosomal protein genes requires additional elements apart from binding sites for Abf1p or Rap1p. Nucl. Acids Res. 23, 1475-1480.
16. Halfter, H., Muller, U., Winnacker, E.-L. and Gallwitz, D. (1989). Isolation and DNA-binding characteristics of a protein involved in transcription activation of two divergently transcribed, essential yeast genes. EMBO. J. 8, 3029-3037.
17. Hamil, K. G., Nam, H. G. and Fried, H. M. (1988). Constitutive transcription of yeast ribosomal protein gene TCM1 is promoted by uncommon cis- and trans-acting elements. Mol. Cell. Biol. 8, 4328-4341.
18. Herruer, M. H., Mager, W. H., Doorenbosch, T. M., Wessels, P. L. M., Wassenaar, T. M. and Planta, R. J. (1989). The extended promoter of the gene encoding ribosomal protein S33 in yeast consists of multiple protein binding elements. Nucl. Acids Res. 17, 7427-7439.
19. Himmelfarb, H. J., Simpson, E. M. and Friesen, J. D. (1987). Isolation and characterization of temperature-sensitive RNA polymerase II mutants of Saccharomyces cerevisiae. Mol. Cell. Biol. 7, 2155-2164.
20. Hu, J., Xu, Y., Schappert, K., et al. (1994). Mutational analysis of the PRP4 protein of Saccharomyces cerevisiae suggests domain structure and snRNP interactions. Nucl. Acids Res. 22, 1724-1734.
21. Iyer, V. and Struhl, K. (1995). Poly(dA:dT), a ubiquitous promoter element that stimulates transcription via its intrinsic DNA structure. EMBO J. 14, 2570-2579.
22. Kerpola, T. K. and Kane, C. M. (1991). RNA polymerase: regulation of transcript elongation and termination. FASEB J. 5, 2833-2842.
23. Kraakman, L. S., Mager, W. H., Grootjans, J. J. and Planta, R. J. (1991). Functional analysis of the promoter of the gene encoding the acidic ribosomal protein L45 in yeast. Biochem. Biophys. Acta 1090, 204-210.
24. Lue, N. F., Buchman, A. R. and Kornberg, R. D. (1989). Activation of yeast RNA polymerase II transcription by a thymidine-rich upstream element in vitro. Proc. Natl. Acad. Sci. USA 86, 486-490.
25. Mager, W. H. and Planta, R. J. (1990). Multifunctional DNA-binding proteins mediate concerted transcription activation of yeast ribosomal protein genes. Biochem. Biophys. Acta 1050, 351-355.
26. McBroom, L. D. and Sadowski, P. D. (1994). Contacts of the ABF1 protein of Saccharomyces cerevisiae with a DNA binding site at MATa. J. Biol. Chem. 269, 16455-16460.
27. McBroom, L. D. B. (1993). PhD Thesis, University of Toronto.
28. McKnight, G. L. and McConaughy, B. L. (1983). Selection of functional cDNAs by complementation in yeast. Proc. Natl. Acad. Sci. USA 80.
29. Mckune, K. and Woychik, N. (1994). Functional substitution of an essential yeast RNA polymerase subunit by a highly conserved mammalian counterpart. Mol. Cell. Biol. 14, 4155-4159.
30. Mosrin, C., Riva, M., Beltrame, M., Cassar, E., Sentenac, A. and Thuriaux, P. (1990). The RPC31 gene of Saccharomyces cerevisiae encodes a subunit of RNA polymerase C (III) with an acidic tail. Mol. Cell. Biol. 10, 4737-4743.
31. Munholland, J. M., Kelly, J. K. and Wildeman, A. G. (1990). DNA sequences required for yeast actin gene transcription do not include conserved CCAAT motif. Nucl. Acids Res. 18, 6061-6068.
32. Pinto, I., Ware, D. E. and Hampsey, M. (1992). The yeast SUA7 gene encodes a homolog of human transcription factor TFIIB and is required for normal start site selection in vivo. Cell 68, 977-988.
33. Pinto, I., Wu, W. H., Na, J. G. and Hampsey, M. (1994). Characterization of sua7 mutations defines a domain of TFIIB involved in transcription start site selection in yeast. J. Biol Chem. 269, 30569-30573.
34. Richardson, J. P. (1993). Transcription termination. Crit. Rev. Biochem. Mol. Biol. 28, 1-30.
35. Russell, P. R. (1983). Evolutionary divergence of the mRNA transcription initiation mechanism in yeast. Nature 301, 167-169.
36. Schultes, N. P. and Szostak, J. W. (1991). A poly-(dA.dT) tract is a component of the recombination initiation site at the ARG4 locus in Saccharomyces cerevisiae. Mol. Cell. Biol. 11, 322-328.
37. Sinclair, D. A., Kornfeld, G. D. and Dawes, I. W. (1994). Yeast intragenic transcriptional control: activation and repression sites within the coding region of the Saccharomyces cerevisiae LPD1 gene. Mol. Cell. Biol. 14, 214-225.
38. Struhl, K. (1989). Molecular mechanisms of transcriptional regulation in yeast. Ann. Rev. Biochem. 58, 1051-1077.
39. Trawick, J. D., Kraut, N., Simon, F. R. and Poyton, R. O. (1992). Regulation of yeast COX6 by the general transcription factor ABF1 and separate HAP2- and heme-responsive elements. Mol. Cell. Biol. 12, 2302-2314.
40. Willett, C. E., Gelfman, C. M. and Holland, M. J. (1993). A complex regulatory element from the yeast gene ENO2 modulates GCR1-dependent transcriptional activation. Mol. Cell. Biol. 13, 2623-2633.
41. Woychik, N. A., Liao, S.-M., Kolodziej, P. and Young, R. A. (1990). Subunits shared by eukaryotic nuclear RNA polymerases. Genes. Dev. 4, 313-323.