A novel cDNA transcript expressed in fractionated X-irradiation-induced murine thymomas

Cell Growth and Differentiation

Volumn 7, Issue 8, 1996, Pages 1113-1123

  Pampeno, Christine L ^a   Meruelo, Daniel ^a  

^a NEW YORK UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ANIMAL CELL; ANIMAL TISSUE; ARTICLE; CELL REGENERATION; DNA TRANSCRIPTION; DROSOPHILA; GENE EXPRESSION; GENE SEQUENCE; LYMPHOCYTE DIFFERENTIATION; MOUSE; NONHUMAN; PRIORITY JOURNAL; RADIATION INJURY; THYMOMA; X IRRADIATION;

AMINO ACID SEQUENCE; ANIMALS; BASE SEQUENCE; BLOTTING, NORTHERN; CONSERVED SEQUENCE; DNA, COMPLEMENTARY; DNA-BINDING PROTEINS; GENE LIBRARY; MICE; MICE, INBRED C57BL; MOLECULAR SEQUENCE DATA; NEOPLASMS, RADIATION-INDUCED; PROTEIN STRUCTURE, SECONDARY; PROTEIN STRUCTURE, TERTIARY; RNA, MESSENGER; SEQUENCE ALIGNMENT; SEQUENCE HOMOLOGY, AMINO ACID; THYMOMA; TISSUE DISTRIBUTION; WHOLE-BODY IRRADIATION;

ANIMALIA; MURINAE;

EID: 0029845133     PISSN: 10449523     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Article

References (57)

1. Kaplan, H. S. The role of radiation on experimental leukemogenesis. Natl. Cancer Inst. Monogr., 14: 207-217, 1963.
2. Muto, M., Kubo, E., and Sado, T. Development of prelymphoma cells committed to thymic lymphomas during radiation-induced thymic lymphomagenesis in B10 mice. Cancer Res., 47: 3469-3472, 1987.
3. Becker, Y., Sprecher, E., Bentov, I., and Berkowitz, C. Bone marrow- derived dendritic cells and the protection against X-ray-induced thymic leukemia in mice: a new interpretation. In Vivo, 7: 281-284, 1993.
4. Boniver, J., Decleve, A., Lieberman, M., Honsick, C., Travis, M., and Kaplan, H. S. Marrow-thymus interactions during radiation leukemogenesis in C57BL/Ka mice. Cancer Res., 41: 390-392, 1981.
5. Defresne, M. P., Greimers, R., Lenaerts, P., and Boniver, J. Effects of marrow grafting on preleukemia cells and thymic nurse cells in C57BL/Ka mice after a leukemogenic split-dose irradiation. J. Natl Cancer Inst., 77: 1079-1085, 1986.
6. Defresne, M. P., Rongy, A. M., Greimers, R., and Boniver, J. Cellular aspects of radiation leukemogenesis in C57BL/Ka mice: alterations to thymic microenvironment and lymphopoiesis. Leukemia Res., 10: 783- 789, 1986.
7. Gjerset, R. A., Arya, J., Volkman, S., and Haas, M. Association of induction of a fully tumorigenic phenotype in murine radiation-induced T-lymphoma cells with loss of differentiation antigens, gain of CD44, and alterations in p53 protein levels. Mol. Carcinog., 5: 190-198, 1992.
8. Haas, M., Mally, M. I., Bogenberger, J. M., Bogart, M. H., Buchanan, M. A., Augery- Bourget, Y., Hyman, R., and Vogt, M. Autocrine growth and progression of murine X-ray-induced T cell lymphomas. EMBO J., 5: 1775-1782, 1986.
9. Muto, M., Kubo, E., and Sado, T. Cellular events during radiation- induced thymic leukemogenesis in mice: abnormal T cell differentiation in the thymus and defect of thymocyte precursors in the bone marrow after split-dose irradiation. J. Immunol., 134: 2026-2031, 1985.
10. Muto, M., Kubo, E., Kamisaku, H., and Sado, T. Phenotypic characterization of thymic prelymphoma cells of B10 mice treated with split-dose irradiation. J. Immunol., 144: 849-853, 1990.
11. Sado, T., Kamisaku, H., and Kubo, E. Bone marrow-thymus interactions during thymic lymphomagenesis induced by fractionated radiation exposure in B10 mice: analysis using bone marrow transplantation between Thy 1 congenic mice. J. Radiat. Res., 32: 168-180, 1991.
12. Amari, N. M., and Meruelo, D. Murine thymomas induced by fractionated-X-irradiation have specific T-cell receptor rearrangements and characteristics associated with day -15 to -16 fetal thymocytes. Mol. Cell. Biol., 7: 4159-4168, 1987.
13. Crispe, N., and Bevan, M. J. Expression and functional significance of the J11d marker on mouse thymocytes. J. Exp. Med., 138: 2013-2018, 1987.
14. Diamond, L. E., Sloan, S. R., Pellicer, A., and Mayday, A. C. T-cell receptor gene rearrangement in primary tumors: effect of genetic background and inducing agent. Immunogenetics, 28: 71-80, 1988.
15. Shimizu, T., Muto, M., Kubo, E., Sado, T., and Yamagishi, H. Multiple pre-neoplastic events and clonal selection of radiation induced mouse thymic lymphomas shown by TCR gene rearrangements. Leukemia Res., 17: 959-965, 1993.
16. Kohne, D. E., Levison, S. A., and Byers, M. J. Room temperature method for increasing the rate of DMA reassociation by many thousand-fold: the phenol emulsion reassociation technique. Biochemistry, 16: 5329-5341, 1977.
17. Travis, G. H., Milner, R. J., and Sutcliffe, J. G. Preparation and use of subtractive cDNA probes for cDNA cloning. In: A. A. Boulton, G. B. Baker, and A. T. Campagnoni (eds.), Neuromethods, Vol. 16, pp. 49-77. Clifton, NJ: Humana Press, 1990.
18. Lieberman, M., and Kaplan, H. S. Leukemogenic activity of filtrates from radiation-induced lymphoid tumors of mice. Science (Washington DC), 130: 387-388, 1959.
19. Kozak, M. Compilation and analysis of sequences upstream from the translational start site in eukaryotic mRNAs. Nucleic Acids Res., 12: 857- 872, 1984.
20. Uberbacher, E. C., and Mural, R. J. Locating protein-coding regions in human DNA sequences by a multiple sensor-neural network approach. Proc. Natl. Acad. Sci. USA, 88: 11261-11265, 1991.
21. Borodovsky, M., and McIninch, J. D. GENMARK: parallel gene recognition for both DNA strands. Computers Chem., 17: 123-133, 1993.
22. Pearson, W. R., and Lipman, D. J. Improved tools for biological sequence comparison. Proc. Natl. Acad. Sci. USA, 85: 2444-2448, 1988.
23. Altschul, S. F., Gish, W., Miller, W., Myers, E. W., and Lipman, D. J. Basic local alignment search tool. J. Mol. Biol., 275: 403-410, 1990.
24. Williamson, M. P. The structure and function of proline-rich regions in proteins. Biochem. J., 297: 249-260, 1994.
25. Chou, P. Y., and Fasman, G. D. Prediction of the secondary structure of proteins from their amino acid sequence. Adv. Enzymol., 47: 45-147, 1978.
26. Eisenberg, D., Weiss, R. M., and Terwilliger, T. C. The hydrophobic moment detects periodicity in protein hydrophobicity. Proc. Natl. Acad. Sci. USA, 81: 140-144, 1984.
27. Garnier, J., Osguthorpe, D. J., and Robson, B. Analysis of the accuracy and implications of simple methods for predicting the secondary structure of globular proteins. J. Mol. Biol., 120: 97-120, 1978.
28. Kyte, J., and Doolittle, R. F. A simple method for displaying the hydropathic character of a protein. J. Mol. Biol., 157: 105-132, 1982.
29. Rost, B., and Sander, C. Improved prediction of protein secondary structure by use of sequence profiles and neural networks. Proc. Natl. Acad. USA, 90: 7558-7562, 1993.
30. Gribskov, M., Luthy, R., and Eisenberg, D. Profile analysis. Methods Enzymol., 183: 146-159, 1990.
31. Freemont, P. S. The RING finger: a novel protein sequence motif related to the zinc finger. Annals NY Acad. Sci., 684: 174-192, 1993.
32. Freemont, P. S., Hanson, I. M., and Trowsdale, J. A novel cysteine-rich sequence motif. Cell, 64: 483-484, 1991.
33. Busseau, I., Diederich, R. J., Xu, T., and Artavanis-Tsakonas, S. A member of the Notch group of interacting loci, deltex encodes a cytoplasmic basic protein. Genetics, 136: 585-596, 1994.
34. Stockert, E., and Old, L. J. Preleukemic expression of TL antigens in X-irradiated C57BL/6 mice. J. Exp. Med., 146: 271-276, 1977.
35. Sachs, A. B. Messenger RNA degradation in eukaryotes. Cell, 74: 413-421, 1993.
36. Takahama, Y., and Singer, A. Post-transcriptional regulation of early T cell development by T cell receptor signals. Science (Washington DC), 258: 1456-1462, 1992.
37. Carr, C., McCourt, D., and Cohen, J. B. The 43-kilodalton protein of Torpedo nicotinic postsynaptic membranes: purification and determination of primary structure. Biochemistry, 26: 7090-7102, 1987.
38. Frail, D. E., McLaughlin, L. L., Mudd, J., and Merlie, J. P. Identification of the mouse muscle 43,000-dalton acetylcholine receptor-associated protein (RAPsyn) by cDNA cloning. J. Biol. Chem., 263: 15602-15607, 1988.
39. Bouchard, M. L., and Cote, S. The Drosophila melanogaster developmental gene g1 encodes a variant zinc-finger motif protein. Gene (Amst.), 125: 205-209, 1993.
40. Dulic, V., and Riezman, H. Characterization of the END1 gene required for vacuole biogenesis and gluconeogenic growth of budding yeast. EMBO J., 8: 1349-1359, 1989.
41. Diederich, R. J., Matsuno, K., Hing, H., and Artavanis-Tsakonas, S. Cylosolic interaction between deltex and Notch ankyrin repeats implicates deltex in the Notch signaling pathway. Development (Camb.), 120: 473-481, 1994.
42. Gorman, M. J., and Girton, J. R. A genetic analysis of deltex and its interaction with the Notch locus in Drosophila melanogaster. Genetics, 131: 99-112, 1992.
43. Artavanis-Tsakonis, S., Matsuno, K., and Fortini, M. E. Notch signaling. Science (Washington DC), 268: 225-232, 1995.
44. del Amo, F. F., Gendron-Maguire, M., Swiatek, P. J., Jenkins, N. A., Copeland, N. G., and Gridley, T. Cloning, analysis, and chromosomal localization of Notch-1, a mouse homolog of Drosophila Notch. Genomics, 15: 259-264, 1993.
45. Ellisen, L. W., Bird, J., West, D. C., Soreng, A. L., Reynolds, T. C., Smith, S. D., and Sklar, J. TAN-1, the human homolog of the Drosophila notch gene, is broken by chromosomal translocations in T lymphoblastic neoplasms. Cell, 66: 649-661, 1991.
46. Meruelo, D., and Rossomando, A. A molecular and genetic approach to understanding the mechanisms by which fractionated X-irradiation induces leukemia in mice. Leukemia Res., 10: 819-832, 1986.
47. Lieberman, M., Decleve, A., Ricciardi-Castagnoli, P., Boniver, J., Finn, O. J., and Kaplan, H. S. Establishment, characterization and virus expression of cell lines derived from radiation- and virus-induced lymphomas of C57BL/Ka mice. Int. J. Cancer, 24: 168-177, 1979.
48. Cheseboro, B., and Wehrly, K. Studies on the role of the host immune response in recovery from Friend virus leukemia. J. Exp. Med., 143: 85-99, 1976.
49. Nobunaga, T., Brown, G. D., Morris, D. R., and Meruelo, D. A novel DNA binding activity is elevated in thymocytes expressing high levels of H-2Dd after radiation leukemia virus infection. J. Immunol., 149: 871-879, 1992.
50. Chomczynski, P., and Sacchi, N. Single-step method of RNA isolation by acid guanidinium thiocyanate-phenol-chloroform extraction. Anal. Biochem., 162: 156-159, 1987.
51. Gubler, U., and Huffman, B. J. A simple and very efficient method for generating cDNA libraries. Gene (Amst.), 25: 263-269, 1983.
52. Hagen, F. S., Gray, C. L., and Kuijper, J. L. Assaying the quality of cDNA libraries. Biotechniques, 6: 340-345, 1988.
53. Sambrook, J., Fritsch, E. F., and Maniatis, T. Molecular Cloning: A Laboratory Manual, Ed. 2. Cold Spring Harbor, NY: Cold Spring Harbor Laboratory, 1989.
54. Yancopoulos, G. D., Oltz, E. M., Rathbun, G., Berman, J. E., Smith, R. K., Lansford, R. D., Rothman, P., Okada, A., Lee, G., Morrow, M., Kaplan, K., Prockop, S., and, Alt, F. W. Isolation of coordinately regulated genes that are expressed in discrete stages of B-cell development. Proc. Natl. Acad. Sci. USA, 87: 5759-5763, 1990.
55. Tsang, S. S., Yin, X., Guzzo-Arkuran, C., Jones, V. S., and Davison, A. J. Loss of resolution in gel electrophoresis of RNA: a problem associated with the presence of formaldehyde gradients. Biotechniques, 14: 380- 381, 1993.
56. Barbu, V., and Dautry, F. Northern blot normalization with a 28S rRNA oligonucleotide probe. Nucleic Acids Res., 17: 7115, 1989.
57. Sanger, F., Nicklen, S., and Coulson, A. R. DNA sequencing with chain-terminating inhibitors. Proc. Natl. Acad. Sci. USA, 74: 5463-5467, 1977.