Identification of new localized RNAs in the Xenopus oocyte by differential display PCR

Developmental Genetics

Volumn 19, Issue 3, 1996, Pages 190-198

  Hudson, John W ^a   Alarcón, Vernadeth B ^a   Elinson, Richard P ^a  

^a UNIVERSITY OF TORONTO   (Canada)

Author keywords

differential display; localized RNA; neural RNAs; WD 40 repeats; Xenopus embryos; Xenopus oocytes

Indexed keywords

COMPLEMENTARY DNA; MESSENGER RNA; TRANSDUCIN;

AMINO ACID SEQUENCE; ANIMAL CELL; ARTICLE; CLONE; EMBRYO DEVELOPMENT; NONHUMAN; NUCLEOTIDE SEQUENCE; OOCYTE; POLYMERASE CHAIN REACTION; PRIORITY JOURNAL; RNA STRUCTURE; XENOPUS;

AMINO ACID SEQUENCE; ANIMALS; BASE SEQUENCE; CELL DIFFERENTIATION; DNA; FEMALE; HUMANS; MOLECULAR SEQUENCE DATA; OOCYTES; OPEN READING FRAMES; POLYMERASE CHAIN REACTION; RNA; SEQUENCE HOMOLOGY, NUCLEIC ACID; TRANSDUCIN; XENOPUS;

ANIMALIA;

EID: 0029844373     PISSN: 0192253X     EISSN: None     Source Type: Journal    
DOI: 10.1002/(SICI)1520-6408(1996)19:3<190::AID-DVG2>3.0.CO;2-4     Document Type: Article

References (30)

1. Benton WD, Davis RW (1977): Screening lambda gt10 recombinant clones by hybridization to single plaques in situ. Science 196:180-182.
2. Elinson RP, King ML, Forristall C (1993): Isolated vegetal cortex from Xenopus oocytes selectively retains localized mRNAs. Dev Biol 160: 554-562.
3. Elinson EP, Pasceri P (1989): Two UV-sensitive targets in dorsoanterior specification of frog embryos. Development 106:511-518.
4. Feinberg AP, Vogelstein B (1983): A technique for radio-labeling DNA restriction endonuclease fragments to high specific activity. Anal Biochem 132:6-13.
5. Forristall C, Pondel M, Chen L, King ML (1995): Patterns of localization and cytoskeletal association of two vegetally localized RNAs, Vg1 and Xcat-2. Development 121:201-208.
6. Grandi P, Doye V, Hurt EC (1993): Purification of NSP1 reveals complex formation with "GLFG" nucleoporins and a novel nuclear pore protein NIC96. EMBO J 12:3061-3071.
7. Gururajan R, Mathews L, Longo FJ, Weeks DL (1994): An3 mRNA encodes an RNA helicase that colocalizes with nucleoli in Xenopus oocytes in a stage-specific manner. Proc Natl Acad Sci USA 91: 2056-2060.
8. Gururajan R, Perry-O'Keefe H, Melton DA, Weeks DL (1991): The Xenopus localized messenger RNA An3 may encode an ATP-dependent RNA helicase. Nature 349, 717-719.
9. Harland, R. (1991): In situ hybridization: An improved whole-mount method for Xenopus embryos. In Kay B, Peng H (eds): "Methods in Cell Biology," Vol. 36. New York: Academic Press, pp. 685-695.
10. Hinkley CS, Martin JF, Leibham D, Perry M (1992): Sequential expression of multiple POU proteins during amphibian early development. Mol Cell Biol 12:638-649.
11. Holowacz T, Elinson RP (1995): Properties of the dorsal activity found in the vegetal cortical cytoplasm of Xenopus eggs. Development 121:2789-2798.
12. Holwill S, Heasman J, Crawley CR, Wylie CC (1987): Axis and germ line deficiencies caused by U.V. irradiation of Xenopus oocytes cultured in vitro. Development 100:735-743.
13. Kloc M, Reddy BA, Miller M, Eastman E, Etkin LE (1991): x121: A localized maternal transcript in Xenopus laevis. Mol. Reprod. Dev. 28:341-345.
14. Ku M, Melton DA (1993): Xwnt-11: A maternally expressed Xenopus wnt gene. Development 119:1161-1173.
15. Liang P, Pardee AB (1992): Differential display of eukaryotic mRNA by means of the polymerase chain reaction. Science 257:967-971
16. Linnen JM, Bailey CP, Weeks DL (1993): Two related localized mRNAs from Xenopus laevis encode ubiquitin-like fusion proteins. Gene 128:181-188.
17. Mosquera L, Forristall C, Zhou Y, King ML (1993): A mRNA localized to the vegetal cortex of Xenopus oocytes encodes a protein with a nanos-like zinc finger domain. Development 117:377-386.
18. Mowry KL, Melton DA (1992): Vegetal messenger RNA localization directed by a 340-nt RNA sequence element in Xenopus oocytes. Science 255:991-994.
19. Nagase T, Miyajima N, Tanaka A, Sazuka T, Seki N, Sato S, Tabata S, Ishikawa K, Kawarabayasi Y, Kotani H, Nomura N (1995a): Prediction of the coding sequences of unidentified human genes III: The coding sequences of 40 new genes (KIAA0081-KIA0120) deduced by analysis of cDNA clones from human cell line KG-1. DNA Res 2:37-43.
20. Nagase T, Miyajima N, Tanaka A, Sazuka T, Seki N, Sato S, Tabata S, Ishikawa K, Kawarabayasi Y, Kotani H, Nomura N (1995b): Prediction of the coding sequences of unidentified human genes: III. The coding sequences of 40 new genes (KIA0081-KIA0120) deduced by analysis of cDNA clones from human cell line KG-1. DNA Res 2, Suppl:51-59.
21. Neer EJ, Schmidt CJ, Nambudripad R, Smith TF (1994): The ancient regulatory-protein family of WD-repeat proteins. Nature 371:297-300.
22. Rebagliati MR, Weeks DL, Harvey RP, Melton DA (1985): Identification and cloning of localized maternal RNAs from Xenopus eggs. Cell 42:769-777.
23. Reddy BA, Kloc M, Etkin LD (1992): The cloning and characterization of a localized maternal transcript in Xenopus laevis whose zygotic counterpart is detected in the CNS. Mech Dev 39:143-150.
24. Sambrook J, Fritsch E, Maniatis T (1989): "Molecular Cloning: A Laboratory Manual," 2nd ed. Cold Spring Harbor, NY: Cold Spring Harbor Laboratory Press.
25. Savage RM, Danilchik MV (1993): Dynamics of germ plasm localization and its inhibition by ultraviolet irradiation in early cleavage Xenopus embryos. Dev Biol 157:371-382.
26. Spevak W, Keiper BD, Stratowa C, Castañón MJ (1993): Saccharomyces cerevisiae cdc15 mutants arrested at a late stage in anaphase are rescued by Xenopus cDNAs encoding N-ras or a protein with β-transducin repeats. Mol Cell Biol 13:4953-4966.
27. Thomsen GH, Melton DA (1993): Processed Vg1 protein is an axial mesoderm inducer in Xenopus. Cell 74:433-441.
28. van der Voorn L, Ploegh HL (1992): The WD-40 repeat. FEBS 307: 131-134.
29. Weeks DL, Melton DA (1987): A maternal mRNA localized to the vegetal hemisphere in Xenopus eggs codes for a growth factor related to TGF-β. Cell 51:861-868.
30. Weeks DL, Rebagliati MR, Harvey RP, Melton DA (1985): Localized maternal mRNAs in Xenopus laevis eggs. CSH Symp Quant Biol 50:21-30.