Molecular phylogeny of Dipterocarpaceae in Southeast Asia using RFLP of PCR-amplified chloroplast genes

Theoretical and Applied Genetics

Volumn 93, Issue 1-2, 1996, Pages 22-29

  Tsumura, Y ^a   Kawahara, T ^a   Wickneswari, R ^b   Yoshimura, K ^a  

^a FORESTRY AND FOREST PRODUCTS RESEARCH INSTITUTE   (Japan)

^b FOREST RESEARCH CENTRE   (Malaysia)

Author keywords

Chloroplast gene; Dipterocarpaceae; PCR RFLP; Phylogeny; Southeast Asia

Indexed keywords

COTYLELOBIUM; DIPTEROCARPACEAE; DIPTEROCARPUS; DRYOBALANOPS; HOPEA; NEOBALANOCARPUS; NEOBALANOCARPUS HEIMII; PARASHOREA; PARASHOREA LUCIDA; PUNA; SHOREA; VATICA;

EID: 0029841058     PISSN: 00405752     EISSN: None     Source Type: Journal    
DOI: 10.1007/BF00225722     Document Type: Article

References (30)

1. Ashton PS (1969) Speciation among tropical forest trees: some deductions in the light of recent evidence. Bot J Linn Soc 1:155-196
2. Ashton PS (1982) Flora Malesiana. Series I-Spermatophyta. Flowering plants, vol. 9, part 2, Dipterocarpaceae. Martinun Nijhoff Pub, The Netherlands
3. Ashton PS, Gan Y-Y, Robertson FW (1984) Electrophoretical and morphological comparisons in ten rain forest species of Shorea (Dipterocarpaceae). Bot J Linn Soc 89:293-304
4. Chase MW, Soltis DE, Olmstead RG, Morgan D, Les DH, Mishler BD, Duvall MR, Price RA, Hills HG, Qiu Y-L, Kron KA, Retting JH, Conti E, Palmer JD, Manhart JR, Sytsma KJ, Michaels HJ, Kress WJ, Karol KG, Clarl WD, Hedren M, Gaut BS, Jansen RK, Kim K-J, Wimpee CF, Smith JF, Furnier GR, Strauss SH, Xiang Q, Plunkett GM, Soltis PS, Swensen SM, Williams SE, Gadek PA, Quinn CJ, Eguiarte LE, Golenberg E, Learn GH, Graham SW, Barrett SCH, Dayanandan S, Albert VA (1993) Phylogenctics of seed plants: an analysis of nucleotide sequences from the plastid gene rbcL. Ann Mo Bot Gard 80:528-580
5. Desch HE (1941) Manual of Malayan timbers. Malayan Forest Records No 15, vol. I, vol. II
6. Fedorov AA (1966) The structure of the tropical rain forest and speciation in the humid tropics. J Ecol 54:1-11
7. Gan Y-Y, Robertson FW (1989) Isozyme variation in some rain forest trees. Biotropica 13:20-28
8. Gan Y-Y, Robertson FW, Ashton PS, Soepadmo E, Lee DW (1977) Genetic variation in wild populations of rain-forest trees. Nature 269:323-325
9. Gottwald H, Parameswaran N (1966) Das sekundare Xylem der Familie Dipterocarpaceae, antomische Untersuchungen zur Taxonomie und Phylogenie. Bot Jahrb 85:410-508
10. Harada K, Kinoshita A, Shukor NAA, Tachida H, Yamazaki T (1994) Genetic variation estimated in three Shorea species by the RAPD analysis. Jpn J Genet 69:713-718
11. Henning J, Herrmann RG (1986) Chloroplast ATP synthase of spinach contains nine nonidentical subunit species, six of which are encoded by plastid chromosomes in two operons in a phylogenetically conserved arrangement. Mol Gen Genet 203:117-128
12. Hipkins VD, Tsai CH, Strauss SH (1990) Sequence of the gene for large subunit of ribulose 1,5-bisphosphate carboxylase from a gymnosperm, Douglas fir. Plant Mol Biol 15:505-507
13. Hiratsuka J, Shimada H, Whittier R, Ishibashi T, Sakamoto M, Kondo C, Honji Y, Sun CR, Meng BY, Li YQ, Kanno A, Nishizawa Y, Hirai A, Shinozaki K, Sugiura M (1989) The complete sequence of the rice (Oryza sativa) chloroplast genome: intermolecular recombination between distinct tRNA genes accounts for a major plastid DNA inversion during the evolution of cereals. Mol Gen Genet 217:185-194
14. Ihara M, Gadrinab LU, Siregar UJ, Iyama S (1986) Genetic control of alcohol dehydrogenese and estimation of some population parameters in Hopea odorata Roxb. (Dipterocarpaceae). Jpn J Genet 61:127-136
15. Jong K (1976) Cytology of the Dipterocarpaceae. In: Burly J, Styles BT (eds) Tropical tree: variation, breeding and conservation. Linnean Soc Symp Ser 2:79-84
16. Jong K, Lethbridge A (1967) Cytological studies in the Dipterocarpaceae. I: Chromosome number of certain Malaysian genera. Notes R Bot Gard Edinburgh 27:175-184
17. Kitamura K, Rahman MYBA, Ochai Y, Yoshimaru H (1994) Estimate of the outcrossing rate on Dryobalanops aromatica Gaertn. F. in primary and secondary forests in Burnei, Borneo, Southeast Asia. Plant Species Biol 9:37-41
18. Lidholm JA, Gustafsson P (1991) A three-step model for the rearrangement of the chloroplast trnK-psbA region of gymnosperm Pinus contrta. Nucleic Acids Res 19:2881-2887
19. Liston A (1992) Variation from restriction chloroplast genes rpo C1 and rpo C2 of the genus Astragalus (Fabaceae): Evidence from restriction site mapping of a PCR-amplified fragment. Am J Bot 79:953-961
20. Murawsaki PA, Banea KS (1994) Genetic structure and mating system of Stemonoporous oblongifolius (Dipterocarpaceae) in Sri Lanka. Am J Bot 81:155-160
21. Murray M, Thompson WF (1980) Rapid isolation of high molecular weight plant DNA. Nucleic Acids Res 8:4321-4325
22. Nei M, Tajima F (1983) Maximum likelihood estimation of the number of nucleotide substitutions from restriction sites data. Genetics 105:207-217
23. Saitou N, Nei M (1987) The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4:406-425
24. Shimada H, Sugiura M (1991) Fine structural features of the chloroplast genome comparison of the sequenced chloroplast genomes. Nucleic Acids Res 19:983-995
25. Shinozaki K, Ohme M, Tanaka M, Wakasugi T, Hayashida N, Matsubayashi T, Zaita N, Chunwongse J, Obokata J, Yamaguchi-Shinozaki K, Ohta C, Torazawa K, Meng BY, Sugita M, Deno H, Kamogashira T, Yamada K, Kusuda J, Takaiwa F, Kato A, Tohdoh N, Shimada H, Sugiura M (1986) The complete nucleotide sequence of tobacco chloroplast genome: its gene organization and expression. EMBO J 5:2043-2049
26. Somega M (1978) Cytogenetical study of the Dipterocarpaceae. Malayan For 41:358-365
27. Symington CF (1943) Malayan Forest Records No. 16. Foresters' manual of Dipterocarps. (Reprinted with plates and historical introduction, University of Malaya Press, Kuala Lumpur, 1074)
28. Swofford DL (1991) PAUP: Phylogenetic Analysis Using Parsimony, Version 3.0s. Computer program distributed by the Illinois Natural History Survey, Champaign, Ill.
29. Tsumura Y, Yoshimura K, Tomaru N, Ohba K (1995) Molecular phylogeny of conifers using RFLP analysis of PCR-amplified specific chloraplast genes. Theor Appl Genet 91:1222-1236
30. Whitmore TC (1984) Tropical rain forests of the Far East, 2nd edn. Oxford University Press, Oxford